Literature DB >> 21590422

Phenotypic analysis of Neurospora crassa gene deletion strains.

Gloria E Turner1.   

Abstract

Phenotypic analysis of Neurospora crassa knockout (KO) mutants was used as a vehicle to introduce students to laboratory research. The availability of gene deletion strains was the impetus for the development of a program designed to introduce beginning science students to basic microbiology, genetics, microscopy and beginning bioinformatics. The goal was to provide a research experience, acquire laboratory skills and phenotype hundreds of KO mutants. The data provided by the students was used to build a phenotype database at the Broad Institute at Harvard/MIT for the fungal scientific community. Each mutant analysis consists of five assays that examine growth and morphology, asexual and sexual development using wild-type (parental) strains as a reference. This information indicates how loss of each gene impacts these basic and important processes.

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Year:  2011        PMID: 21590422     DOI: 10.1007/978-1-61779-040-9_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  The enigmatic role of fungal annexins: the case of Cryptococcus neoformans.

Authors:  Maria Maryam; Man Shun Fu; Alexandre Alanio; Emma Camacho; Diego S Goncalves; Eden E Faneuff; Nina T Grossman; Arturo Casadevall; Carolina Coelho
Journal:  Microbiology (Reading)       Date:  2019-05-29       Impact factor: 2.777

2.  Global analysis of serine-threonine protein kinase genes in Neurospora crassa.

Authors:  Gyungsoon Park; Jacqueline A Servin; Gloria E Turner; Lorena Altamirano; Hildur V Colot; Patrick Collopy; Liubov Litvinkova; Liande Li; Carol A Jones; Fitz-Gerald Diala; Jay C Dunlap; Katherine A Borkovich
Journal:  Eukaryot Cell       Date:  2011-09-30

3.  Global Analysis of Predicted G Protein-Coupled Receptor Genes in the Filamentous Fungus, Neurospora crassa.

Authors:  Ilva E Cabrera; Itallia V Pacentine; Andrew Lim; Nayeli Guerrero; Svetlana Krystofova; Liande Li; Alexander V Michkov; Jacqueline A Servin; Steven R Ahrendt; Alexander J Carrillo; Liza M Davidson; Andrew H Barsoum; Jackie Cao; Ronald Castillo; Wan-Ching Chen; Alex Dinkchian; Stephanie Kim; Sho M Kitada; Taffani H Lai; Ashley Mach; Cristin Malekyan; Toua R Moua; Carlos Rojas Torres; Alaina Yamamoto; Katherine A Borkovich
Journal:  G3 (Bethesda)       Date:  2015-10-13       Impact factor: 3.154

4.  Functional Profiling of Transcription Factor Genes in Neurospora crassa.

Authors:  Alexander J Carrillo; Patrick Schacht; Ilva E Cabrera; Johnathon Blahut; Loren Prudhomme; Sarah Dietrich; Thomas Bekman; Jennifer Mei; Cristian Carrera; Vivian Chen; Isaiah Clark; Gerardo Fierro; Logan Ganzen; Jose Orellana; Shelby Wise; Kevin Yang; Hui Zhong; Katherine A Borkovich
Journal:  G3 (Bethesda)       Date:  2017-09-07       Impact factor: 3.154

5.  Clustering analysis of large-scale phenotypic data in the model filamentous fungus Neurospora crassa.

Authors:  Alexander J Carrillo; Ilva E Cabrera; Marko J Spasojevic; Patrick Schacht; Jason E Stajich; Katherine A Borkovich
Journal:  BMC Genomics       Date:  2020-11-02       Impact factor: 3.969

6.  Global analysis of serine/threonine and tyrosine protein phosphatase catalytic subunit genes in Neurospora crassa reveals interplay between phosphatases and the p38 mitogen-activated protein kinase.

Authors:  Arit Ghosh; Jacqueline A Servin; Gyungsoon Park; Katherine A Borkovich
Journal:  G3 (Bethesda)       Date:  2014-02-19       Impact factor: 3.154

7.  Genetic relationships between the RACK1 homolog cpc-2 and heterotrimeric G protein subunit genes in Neurospora crassa.

Authors:  Amruta Garud; Alexander J Carrillo; Logan A Collier; Arit Ghosh; James D Kim; Berenise Lopez-Lopez; Shouqiang Ouyang; Katherine A Borkovich
Journal:  PLoS One       Date:  2019-10-03       Impact factor: 3.240

  7 in total

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