Literature DB >> 21589607

2,6-Dimethyl-4-(1,3,4-oxadiazol-2-yl)quinoline.

Artyom G Kashaev, Anatoliy V Zimichev, Victor B Rybakov, Yurij N Klimochkin, Margarita N Zemtsova.   

Abstract

The title compound, C(13)H(11)N(3)O, a potential chemotherapeutic agent, contains a essential planar [maximum deviation = 0.0144 (14) Å] quinoline moiety. The quinoline ring system and the five-membered heterocycle form a dihedral angle of 7.81 (6)°. In the crystal, inter-molecular non-classical C-H⋯N hydrogen bonding is present.

Entities:  

Year:  2010        PMID: 21589607      PMCID: PMC3011631          DOI: 10.1107/S1600536810048683

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the use of compounds containing a quinoline fragment as chemotherapeutical agents, see: Kaila et al. (2007 ▶); Vaitilingam et al. (2004 ▶).

Experimental

Crystal data

C13H11N3O M = 225.25 Monoclinic, a = 15.5372 (14) Å b = 9.7546 (7) Å c = 7.3984 (5) Å β = 100.64 (1)° V = 1102.02 (15) Å3 Z = 4 Cu Kα radiation μ = 0.73 mm−1 T = 295 K 0.20 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: refined from ΔF (Walker & Stuart, 1983 ▶) T min = 0.391, T max = 0.865 2236 measured reflections 2236 independent reflections 1855 reflections with I > 2σ(I) 1 standard reflections every 60 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.130 S = 1.07 2236 reflections 156 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810048683/ds2065sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048683/ds2065Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3OF(000) = 472
Mr = 225.25Dx = 1.358 Mg m3
Monoclinic, P21/cMelting point = 448–449 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 15.5372 (14) ÅCell parameters from 25 reflections
b = 9.7546 (7) Åθ = 36.3–39.9°
c = 7.3984 (5) ŵ = 0.73 mm1
β = 100.64 (1)°T = 295 K
V = 1102.02 (15) Å3Prism, colourless
Z = 40.20 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometer1855 reflections with I > 2σ(I)
Radiation source: Fine-focus sealed tubeRint = 0.0000
Graphiteθmax = 74.9°, θmin = 2.9°
Non–profiled ω scansh = 0→19
Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983)k = 0→12
Tmin = 0.391, Tmax = 0.865l = −8→9
2236 measured reflections1 standard reflections every 60 min
2236 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0669P)2 + 0.1662P] where P = (Fo2 + 2Fc2)/3
2236 reflections(Δ/σ)max = 0.005
156 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.39891 (8)0.63577 (13)0.05252 (18)0.0557 (3)
C20.36926 (10)0.75870 (16)0.0823 (2)0.0549 (4)
C210.42870 (12)0.87852 (19)0.0735 (3)0.0720 (5)
H21A0.48750.84640.07810.108*
H21B0.42710.93830.17580.108*
H21C0.40960.9276−0.03930.108*
C30.28466 (10)0.77894 (16)0.1206 (2)0.0537 (4)
H30.26630.86730.14170.064*
C40.22912 (9)0.67122 (14)0.12717 (19)0.0479 (3)
C50.25819 (9)0.53629 (15)0.09414 (18)0.0468 (3)
C60.20838 (9)0.41454 (15)0.09503 (19)0.0505 (3)
H60.15130.42060.11580.061*
C70.24197 (10)0.28864 (15)0.0662 (2)0.0532 (4)
C710.19028 (12)0.15983 (16)0.0748 (3)0.0656 (4)
H71A0.13150.18290.08680.098*
H71B0.21710.10620.17890.098*
H71C0.18910.1078−0.03580.098*
C80.32817 (11)0.28112 (16)0.0302 (2)0.0599 (4)
H80.35150.19590.00970.072*
C90.37777 (10)0.39518 (17)0.0249 (2)0.0587 (4)
H90.43400.3871−0.00030.070*
C100.34470 (9)0.52589 (15)0.0574 (2)0.0508 (3)
C110.14273 (9)0.69987 (15)0.1721 (2)0.0500 (3)
O120.11965 (7)0.83379 (11)0.18110 (16)0.0631 (3)
C130.03932 (11)0.8249 (2)0.2255 (3)0.0688 (5)
H130.00570.90130.24190.083*
N140.01403 (9)0.70333 (17)0.2429 (2)0.0739 (4)
N150.08253 (9)0.61910 (15)0.2072 (2)0.0651 (4)
U11U22U33U12U13U23
N10.0469 (6)0.0603 (8)0.0626 (8)−0.0012 (5)0.0168 (5)0.0026 (6)
C20.0506 (8)0.0585 (9)0.0568 (8)−0.0052 (6)0.0135 (6)0.0015 (6)
C210.0661 (10)0.0651 (10)0.0887 (13)−0.0142 (8)0.0241 (9)0.0008 (9)
C30.0542 (8)0.0518 (8)0.0570 (9)0.0007 (6)0.0150 (6)−0.0010 (6)
C40.0464 (7)0.0516 (8)0.0468 (8)0.0019 (6)0.0117 (6)0.0008 (6)
C50.0456 (7)0.0520 (8)0.0442 (7)0.0029 (6)0.0119 (5)0.0018 (5)
C60.0472 (7)0.0558 (8)0.0508 (8)0.0007 (6)0.0150 (6)0.0008 (6)
C70.0561 (8)0.0517 (8)0.0532 (8)0.0012 (6)0.0134 (6)0.0002 (6)
C710.0701 (10)0.0550 (9)0.0745 (11)−0.0045 (8)0.0207 (8)−0.0047 (7)
C80.0602 (9)0.0530 (8)0.0695 (10)0.0098 (7)0.0195 (7)0.0008 (7)
C90.0491 (8)0.0616 (9)0.0693 (10)0.0082 (7)0.0209 (7)0.0009 (7)
C100.0463 (7)0.0557 (8)0.0522 (8)0.0019 (6)0.0142 (6)0.0033 (6)
C110.0501 (7)0.0510 (8)0.0506 (8)0.0051 (6)0.0138 (6)−0.0015 (6)
O120.0570 (6)0.0550 (6)0.0804 (8)0.0078 (5)0.0207 (5)−0.0039 (5)
C130.0575 (9)0.0735 (11)0.0795 (12)0.0173 (8)0.0235 (8)−0.0056 (9)
N140.0573 (8)0.0778 (10)0.0940 (11)0.0120 (7)0.0337 (7)0.0009 (8)
N150.0538 (7)0.0647 (8)0.0840 (10)0.0053 (6)0.0315 (7)0.0014 (7)
N1—C21.3177 (19)C7—C81.415 (2)
N1—C101.3677 (18)C7—C711.499 (2)
C2—C31.408 (2)C71—H71A0.9600
C2—C211.499 (2)C71—H71B0.9600
C21—H21A0.9600C71—H71C0.9600
C21—H21B0.9600C8—C91.358 (2)
C21—H21C0.9600C8—H80.9300
C3—C41.366 (2)C9—C101.412 (2)
C3—H30.9300C9—H90.9300
C4—C51.4271 (19)C11—N151.286 (2)
C4—C111.4680 (19)C11—O121.3596 (17)
C5—C61.4182 (19)O12—C131.3508 (19)
C5—C101.4233 (19)C13—N141.263 (2)
C6—C71.366 (2)C13—H130.9300
C6—H60.9300N14—N151.4075 (18)
C2—N1—C10118.21 (12)C7—C71—H71A109.5
N1—C2—C3121.95 (14)C7—C71—H71B109.5
N1—C2—C21117.71 (14)H71A—C71—H71B109.5
C3—C2—C21120.33 (14)C7—C71—H71C109.5
C2—C21—H21A109.5H71A—C71—H71C109.5
C2—C21—H21B109.5H71B—C71—H71C109.5
H21A—C21—H21B109.5C9—C8—C7121.66 (14)
C2—C21—H21C109.5C9—C8—H8119.2
H21A—C21—H21C109.5C7—C8—H8119.2
H21B—C21—H21C109.5C8—C9—C10120.58 (13)
C4—C3—C2121.23 (14)C8—C9—H9119.7
C4—C3—H3119.4C10—C9—H9119.7
C2—C3—H3119.4N1—C10—C9117.26 (13)
C3—C4—C5118.75 (13)N1—C10—C5123.86 (13)
C3—C4—C11118.15 (13)C9—C10—C5118.88 (13)
C5—C4—C11123.09 (12)N15—C11—O12111.76 (13)
C6—C5—C10118.46 (13)N15—C11—C4131.21 (14)
C6—C5—C4125.54 (12)O12—C11—C4117.03 (12)
C10—C5—C4116.00 (13)C13—O12—C11102.38 (12)
C7—C6—C5121.84 (13)N14—C13—O12113.79 (14)
C7—C6—H6119.1N14—C13—H13123.1
C5—C6—H6119.1O12—C13—H13123.1
C6—C7—C8118.56 (14)C13—N14—N15105.60 (13)
C6—C7—C71121.59 (13)C11—N15—N14106.47 (14)
C8—C7—C71119.84 (14)
C10—N1—C2—C30.7 (2)C2—N1—C10—C5−0.4 (2)
C10—N1—C2—C21−178.99 (14)C8—C9—C10—N1179.04 (14)
N1—C2—C3—C4−0.4 (2)C8—C9—C10—C5−0.6 (2)
C21—C2—C3—C4179.24 (15)C6—C5—C10—N1179.88 (13)
C2—C3—C4—C5−0.1 (2)C4—C5—C10—N1−0.1 (2)
C2—C3—C4—C11178.58 (13)C6—C5—C10—C9−0.5 (2)
C3—C4—C5—C6−179.61 (13)C4—C5—C10—C9179.53 (13)
C11—C4—C5—C61.8 (2)C3—C4—C11—N15−171.28 (16)
C3—C4—C5—C100.3 (2)C5—C4—C11—N157.4 (3)
C11—C4—C5—C10−178.28 (13)C3—C4—C11—O128.1 (2)
C10—C5—C6—C71.6 (2)C5—C4—C11—O12−173.22 (12)
C4—C5—C6—C7−178.43 (14)N15—C11—O12—C130.07 (17)
C5—C6—C7—C8−1.6 (2)C4—C11—O12—C13−179.46 (13)
C5—C6—C7—C71177.53 (14)C11—O12—C13—N140.0 (2)
C6—C7—C8—C90.4 (2)O12—C13—N14—N15−0.1 (2)
C71—C7—C8—C9−178.70 (15)O12—C11—N15—N14−0.13 (18)
C7—C8—C9—C100.7 (3)C4—C11—N15—N14179.32 (15)
C2—N1—C10—C9179.94 (13)C13—N14—N15—C110.14 (19)
D—H···AD—HH···AD···AD—H···A
C13—H13···N15i0.932.593.523 (2)178
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯N15i0.932.593.523 (2)178

Symmetry code: (i) .

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  2-(4-Chlorobenzyl)-3-hydroxy-7,8,9,10-tetrahydrobenzo[H]quinoline-4-carboxylic acid (PSI-697): identification of a clinical candidate from the quinoline salicylic acid series of P-selectin antagonists.

Authors:  Neelu Kaila; Kristin Janz; Adrian Huang; Alessandro Moretto; Silvano DeBernardo; Patricia W Bedard; Steve Tam; Valerie Clerin; James C Keith; Desirée H H Tsao; Natalia Sushkova; Gray D Shaw; Raymond T Camphausen; Robert G Schaub; Qin Wang
Journal:  J Med Chem       Date:  2007-01-11       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and antimycobacterial activities of ring-substituted quinolinecarboxylic acid/ester analogues. Part 1.

Authors:  Balasubramanian Vaitilingam; Amit Nayyar; Prakash B Palde; Vikramdeep Monga; Rahul Jain; Sukhraj Kaur; Prati Pal Singh
Journal:  Bioorg Med Chem       Date:  2004-08-01       Impact factor: 3.641

  4 in total

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