Literature DB >> 21589602

(E,E)-3,3'-Dimethyl-1,1'-diphenyl-4,4'-{[3-aza-pentane-1,5-diylbis(aza-nedi-yl)]bis-(phenyl-methyl-idyne)}di-1H-pyrazol-5(4H)-one.

Zhao-Po Zhang, Yuan Wang, Xiao-Xia Li, Yan-Wei Li.   

Abstract

The asymmetric unit of the title compound, C(38)H(37)N(7)O(2), contains one half-mol-ecule, situated on a twofold rotational axis, in which one amino group is involved in intra-molecular N-H⋯O hydrogen bond and the two phenyl rings are twisted from the plane of pyrazolone ring by 26.69 (10) and 79.64 (8)°. The crystal packing exhibits no classical inter-molecular contacts.

Entities:  

Year:  2010        PMID: 21589602      PMCID: PMC3011678          DOI: 10.1107/S1600536810048981

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and the DNA binding properties of its transition metal complexes, see: Yang et al. (2000 ▶); Wang & Yang (2005 ▶). For the similar structure of (E,E)-3,3′-dimethyl-1,1′-diphenyl-4,4′-{(ethane-1,2-diyldiimino)­bis­[(2-fur­yl)-methyl­idyne]}di-1H-pyrazol-5(4H)-one, see: Wang (2010 ▶).

Experimental

Crystal data

C38H37N7O2 M = 623.75 Monoclinic, a = 20.3219 (8) Å b = 8.1990 (2) Å c = 20.5468 (6) Å β = 106.748 (2)° V = 3278.27 (18) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.23 × 0.21 × 0.15 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.982, T max = 0.988 8269 measured reflections 3765 independent reflections 1886 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.179 S = 1.01 3765 reflections 214 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048981/cv5005sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048981/cv5005Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C38H37N7O2F(000) = 1320
Mr = 623.75Dx = 1.264 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 20.3219 (8) ÅCell parameters from 1721 reflections
b = 8.1990 (2) Åθ = 2.5–22.0°
c = 20.5468 (6) ŵ = 0.08 mm1
β = 106.748 (2)°T = 296 K
V = 3278.27 (18) Å3Block, yellow
Z = 40.23 × 0.21 × 0.15 mm
Bruker SMART APEXII CCD diffractometer3765 independent reflections
Radiation source: fine-focus sealed tube1886 reflections with I > 2σ(I)
graphiteRint = 0.021
phi and ω scansθmax = 27.7°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −26→20
Tmin = 0.982, Tmax = 0.988k = −8→10
8269 measured reflectionsl = −26→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.179H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0884P)2 + 0.1149P] where P = (Fo2 + 2Fc2)/3
3765 reflections(Δ/σ)max < 0.001
214 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.06573 (8)0.23883 (18)0.35444 (8)0.0809 (5)
N10.14838 (9)0.0606 (2)0.41990 (8)0.0707 (5)
C70.12657 (11)0.1980 (3)0.38051 (10)0.0645 (6)
C120.25215 (10)0.4844 (3)0.32781 (11)0.0661 (6)
N20.21985 (10)0.0439 (3)0.43823 (10)0.0819 (6)
N30.12874 (9)0.4629 (2)0.29494 (10)0.0833 (6)
H3A0.09270.41450.29920.100*
C110.18821 (10)0.4066 (3)0.33364 (11)0.0657 (6)
N40.00000.6106 (3)0.25000.0898 (9)
H40.00000.50570.25000.108*
C80.18835 (10)0.2749 (3)0.37639 (10)0.0635 (6)
C60.10856 (13)−0.0732 (3)0.42954 (10)0.0719 (6)
C170.27276 (12)0.4657 (3)0.27000 (11)0.0738 (6)
H170.24560.40700.23330.089*
C90.24330 (11)0.1713 (3)0.41344 (10)0.0715 (6)
C190.06028 (11)0.7026 (3)0.25289 (12)0.0802 (7)
H19A0.07490.76080.29580.096*
H19B0.05000.78250.21650.096*
C150.37336 (13)0.6229 (3)0.32006 (17)0.0930 (8)
H150.41440.66850.31740.112*
C130.29269 (12)0.5747 (3)0.38196 (12)0.0822 (7)
H130.27910.58760.42120.099*
C160.33348 (14)0.5339 (3)0.26650 (14)0.0840 (7)
H160.34760.51960.22770.101*
C50.04144 (14)−0.0517 (3)0.42877 (12)0.0830 (7)
H50.02240.05240.42390.100*
C180.11649 (12)0.5955 (3)0.24635 (13)0.0913 (8)
H18A0.10480.55110.20070.110*
H18B0.15820.65920.25350.110*
C140.35261 (13)0.6447 (3)0.37766 (15)0.0951 (8)
H140.37920.70680.41360.114*
C100.31871 (12)0.1867 (4)0.42487 (13)0.0961 (8)
H10A0.34120.09050.44720.144*
H10B0.33540.28030.45280.144*
H10C0.32810.19910.38200.144*
C10.13730 (17)−0.2275 (3)0.43868 (12)0.0930 (8)
H10.1832−0.24280.44090.112*
C20.0968 (2)−0.3578 (4)0.44439 (14)0.1196 (12)
H20.1156−0.46210.44960.144*
C40.00213 (17)−0.1842 (4)0.43516 (14)0.1080 (9)
H4A−0.0435−0.16920.43440.130*
C30.0297 (3)−0.3380 (5)0.44262 (15)0.1220 (12)
H30.0030−0.42760.44640.146*
U11U22U33U12U13U23
O10.0582 (10)0.0849 (11)0.0935 (11)0.0105 (8)0.0123 (8)0.0203 (9)
N10.0691 (12)0.0775 (12)0.0639 (11)0.0186 (10)0.0165 (9)0.0105 (10)
C70.0633 (14)0.0714 (13)0.0550 (11)0.0118 (11)0.0113 (10)0.0031 (11)
C120.0527 (12)0.0789 (14)0.0630 (13)0.0104 (10)0.0106 (10)0.0064 (11)
N20.0710 (13)0.1030 (15)0.0698 (12)0.0299 (11)0.0171 (9)0.0151 (11)
N30.0534 (11)0.0994 (14)0.0904 (14)0.0020 (10)0.0098 (9)0.0312 (12)
C110.0534 (12)0.0782 (14)0.0613 (12)0.0071 (11)0.0099 (9)−0.0004 (11)
N40.0586 (17)0.0646 (15)0.141 (3)0.0000.0209 (16)0.000
C80.0578 (13)0.0768 (14)0.0529 (11)0.0114 (11)0.0109 (9)0.0040 (11)
C60.0888 (17)0.0736 (15)0.0502 (11)0.0087 (13)0.0153 (11)0.0050 (11)
C170.0676 (15)0.0905 (16)0.0623 (13)0.0129 (12)0.0171 (11)0.0103 (12)
C90.0635 (14)0.0937 (16)0.0556 (12)0.0222 (13)0.0144 (10)0.0047 (12)
C190.0640 (15)0.0849 (15)0.0790 (15)−0.0046 (13)0.0001 (11)0.0105 (13)
C150.0587 (15)0.0976 (19)0.118 (2)0.0060 (14)0.0185 (15)0.0314 (18)
C130.0626 (14)0.1095 (18)0.0691 (14)0.0038 (14)0.0101 (11)−0.0065 (14)
C160.0793 (18)0.0950 (17)0.0848 (17)0.0241 (14)0.0348 (14)0.0294 (15)
C50.0876 (18)0.0819 (16)0.0771 (15)−0.0009 (14)0.0201 (13)0.0111 (13)
C180.0667 (15)0.1080 (18)0.0938 (17)0.0109 (14)0.0146 (12)0.0381 (15)
C140.0646 (17)0.110 (2)0.101 (2)−0.0025 (14)0.0075 (14)−0.0023 (16)
C100.0650 (16)0.134 (2)0.0863 (16)0.0318 (15)0.0163 (12)0.0204 (16)
C10.136 (2)0.0787 (17)0.0666 (14)0.0274 (17)0.0325 (15)0.0120 (13)
C20.205 (4)0.074 (2)0.0774 (19)0.014 (2)0.037 (2)0.0158 (15)
C40.119 (2)0.105 (2)0.0920 (19)−0.020 (2)0.0188 (16)0.0229 (17)
C30.182 (4)0.100 (3)0.0778 (18)−0.037 (3)0.026 (2)0.0155 (17)
O1—C71.243 (2)C19—H19A0.9700
N1—C71.383 (3)C19—H19B0.9700
N1—N21.398 (2)C15—C161.374 (4)
N1—C61.411 (3)C15—C141.378 (4)
C7—C81.429 (3)C15—H150.9300
C12—C171.377 (3)C13—C141.372 (3)
C12—C131.391 (3)C13—H130.9300
C12—C111.483 (3)C16—H160.9300
N2—C91.310 (3)C5—C41.377 (4)
N3—C111.324 (3)C5—H50.9300
N3—C181.448 (3)C18—H18A0.9700
N3—H3A0.8600C18—H18B0.9700
C11—C81.392 (3)C14—H140.9300
N4—C191.425 (3)C10—H10A0.9600
N4—C19i1.425 (3)C10—H10B0.9600
N4—H40.8600C10—H10C0.9600
C8—C91.435 (3)C1—C21.375 (4)
C6—C51.371 (3)C1—H10.9300
C6—C11.384 (3)C2—C31.362 (5)
C17—C161.375 (3)C2—H20.9300
C17—H170.9300C4—C31.370 (5)
C9—C101.487 (3)C4—H4A0.9300
C19—C181.477 (3)C3—H30.9300
C7—N1—N2111.73 (18)C16—C15—H15120.0
C7—N1—C6127.98 (19)C14—C15—H15120.0
N2—N1—C6118.64 (18)C14—C13—C12120.2 (2)
O1—C7—N1125.6 (2)C14—C13—H13119.9
O1—C7—C8129.6 (2)C12—C13—H13119.9
N1—C7—C8104.77 (18)C15—C16—C17120.3 (2)
C17—C12—C13119.5 (2)C15—C16—H16119.8
C17—C12—C11120.9 (2)C17—C16—H16119.8
C13—C12—C11119.66 (19)C6—C5—C4120.0 (3)
C9—N2—N1106.44 (17)C6—C5—H5120.0
C11—N3—C18128.4 (2)C4—C5—H5120.0
C11—N3—H3A115.8N3—C18—C19111.5 (2)
C18—N3—H3A115.8N3—C18—H18A109.3
N3—C11—C8119.03 (19)C19—C18—H18A109.3
N3—C11—C12118.1 (2)N3—C18—H18B109.3
C8—C11—C12122.84 (18)C19—C18—H18B109.3
C19—N4—C19i116.1 (3)H18A—C18—H18B108.0
C19—N4—H4122.0C13—C14—C15119.9 (3)
C19i—N4—H4122.0C13—C14—H14120.1
C11—C8—C7122.52 (18)C15—C14—H14120.1
C11—C8—C9130.9 (2)C9—C10—H10A109.5
C7—C8—C9105.7 (2)C9—C10—H10B109.5
C5—C6—C1119.9 (2)H10A—C10—H10B109.5
C5—C6—N1120.5 (2)C9—C10—H10C109.5
C1—C6—N1119.6 (2)H10A—C10—H10C109.5
C16—C17—C12120.0 (2)H10B—C10—H10C109.5
C16—C17—H17120.0C2—C1—C6118.8 (3)
C12—C17—H17120.0C2—C1—H1120.6
N2—C9—C8111.3 (2)C6—C1—H1120.6
N2—C9—C10118.7 (2)C3—C2—C1121.6 (3)
C8—C9—C10130.0 (2)C3—C2—H2119.2
N4—C19—C18111.1 (2)C1—C2—H2119.2
N4—C19—H19A109.4C3—C4—C5120.4 (3)
C18—C19—H19A109.4C3—C4—H4A119.8
N4—C19—H19B109.4C5—C4—H4A119.8
C18—C19—H19B109.4C2—C3—C4119.1 (3)
H19A—C19—H19B108.0C2—C3—H3120.4
C16—C15—C14120.1 (2)C4—C3—H3120.4
N2—N1—C7—O1176.4 (2)C11—C12—C17—C16−177.64 (19)
C6—N1—C7—O111.4 (3)N1—N2—C9—C8−1.4 (2)
N2—N1—C7—C8−2.4 (2)N1—N2—C9—C10−179.79 (19)
C6—N1—C7—C8−167.39 (18)C11—C8—C9—N2−168.8 (2)
C7—N1—N2—C92.5 (2)C7—C8—C9—N20.0 (2)
C6—N1—N2—C9169.01 (18)C11—C8—C9—C109.3 (4)
C18—N3—C11—C8−178.9 (2)C7—C8—C9—C10178.1 (2)
C18—N3—C11—C12−0.7 (3)C19i—N4—C19—C18−172.3 (2)
C17—C12—C11—N3−69.2 (3)C17—C12—C13—C140.1 (4)
C13—C12—C11—N3112.2 (2)C11—C12—C13—C14178.8 (2)
C17—C12—C11—C8108.9 (2)C14—C15—C16—C17−0.1 (4)
C13—C12—C11—C8−69.7 (3)C12—C17—C16—C15−1.0 (3)
N3—C11—C8—C7−0.3 (3)C1—C6—C5—C4−1.8 (3)
C12—C11—C8—C7−178.43 (19)N1—C6—C5—C4177.1 (2)
N3—C11—C8—C9166.9 (2)C11—N3—C18—C19−135.6 (3)
C12—C11—C8—C9−11.2 (3)N4—C19—C18—N3−52.7 (3)
O1—C7—C8—C11−7.3 (4)C12—C13—C14—C15−1.3 (4)
N1—C7—C8—C11171.45 (18)C16—C15—C14—C131.3 (4)
O1—C7—C8—C9−177.3 (2)C5—C6—C1—C22.3 (3)
N1—C7—C8—C91.4 (2)N1—C6—C1—C2−176.6 (2)
C7—N1—C6—C5−32.3 (3)C6—C1—C2—C3−1.3 (4)
N2—N1—C6—C5163.56 (19)C6—C5—C4—C30.3 (4)
C7—N1—C6—C1146.5 (2)C1—C2—C3—C4−0.2 (5)
N2—N1—C6—C1−17.5 (3)C5—C4—C3—C20.7 (5)
C13—C12—C17—C161.0 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O10.862.002.722 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O10.862.002.722 (2)140
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E,E)-3,3'-Dimethyl-1,1'-diphenyl-4,4'-{(ethane-1,2-diyldiimino)-bis-[(2-fur-yl)methyl-idyne]}di-1H-pyrazol-5(4H)-one.

Authors:  Hai-Wen Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  2 in total
  2 in total

1.  3-Methyl-4-{[(3-{[(3-methyl-5-oxo-1-phenyl-4,5-dihydro-1H-pyrazol-4-yl-idene)(phen-yl)meth-yl]amino-meth-yl}benz-yl)amino](phen-yl)methyl-idene}-1-phenyl-1H-pyrazol-5(4H)-one.

Authors:  Hong-Xin Cai; Wei-Na Wu; Xiao-Xia Li; Yuan Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-13

2.  3-Methyl-1-phenyl-4-[(Z)-phen-yl(4-acetamido-anilino)methyl-idene]-1H-pyrazol-5(4H)-one.

Authors:  Li-Hua Zhi; Yuan Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20
  2 in total

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