Literature DB >> 21589592

Piperazine-2,3,5,6-tetra-one.

Jing-Jing Jia, Xiu-Jin Meng, Shi-Zhang Liang, Shu-Hua Zhang, Yi-Min Jiang.   

Abstract

The mol-ecule of the title compound, C(4)H(2)N(2)O(4), is located around an inversion center and the four O atoms are in the 2,3,5,6-positions of the piperazine ring. In the crystal, bifurcated N-H⋯O hydrogen bonds link the mol-ecules into a corrugated layer parallel to (101).

Entities:  

Year:  2010        PMID: 21589592      PMCID: PMC3011555          DOI: 10.1107/S1600536810048075

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of tetra­one, see: Norcross et al. (2008 ▶). For related structures, see Sletten et al. (1970 ▶, 1980 ▶); Sarangarajan et al. (2005 ▶); Norcross et al. (2008 ▶); Jin et al. (1998 ▶); Sanner et al. (1992 ▶); Ongania et al. (1985 ▶).

Experimental

Crystal data

C4H2N2O4 M = 142.08 Monoclinic, a = 5.163 (1) Å b = 8.6220 (17) Å c = 5.6540 (11) Å β = 105.25 (3)° V = 242.83 (8) Å3 Z = 2 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.42 × 0.32 × 0.12 mm

Data collection

Siemens P4 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.930, T max = 0.978 1357 measured reflections 438 independent reflections 383 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.092 S = 1.23 438 reflections 46 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: XSCANS (Siemens, 1994 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048075/dn2617sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048075/dn2617Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H2N2O4F(000) = 144
Mr = 142.08Dx = 1.943 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 438 reflections
a = 5.163 (1) Åθ = 4.4–25.3°
b = 8.6220 (17) ŵ = 0.18 mm1
c = 5.6540 (11) ÅT = 293 K
β = 105.25 (3)°Block, colourless
V = 242.83 (8) Å30.42 × 0.32 × 0.12 mm
Z = 2
Siemens P4 diffractometer438 independent reflections
Radiation source: fine-focus sealed tube383 reflections with I > 2σ(I)
graphiteRint = 0.024
ω scansθmax = 25.3°, θmin = 4.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.930, Tmax = 0.978k = −10→10
1357 measured reflectionsl = −6→6
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.23w = 1/[σ2(Fo2) + (0.0355P)2 + 0.1147P] where P = (Fo2 + 2Fc2)/3
438 reflections(Δ/σ)max < 0.001
46 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1613 (3)0.55814 (19)0.7646 (3)0.0343 (5)
O20.8069 (3)0.25100 (19)0.6060 (3)0.0342 (5)
N10.4775 (4)0.3995 (2)0.6856 (3)0.0261 (5)
H10.46030.33620.79810.031*
C10.6621 (5)0.3635 (2)0.5614 (4)0.0233 (5)
C20.3169 (4)0.5281 (2)0.6461 (4)0.0233 (5)
U11U22U33U12U13U23
O10.0357 (10)0.0355 (10)0.0373 (10)0.0010 (8)0.0197 (9)−0.0034 (8)
O20.0348 (10)0.0268 (9)0.0402 (10)0.0099 (8)0.0086 (8)0.0048 (7)
N10.0330 (11)0.0229 (10)0.0248 (11)0.0004 (9)0.0120 (9)0.0053 (8)
C10.0221 (12)0.0205 (11)0.0256 (12)−0.0019 (10)0.0034 (10)−0.0017 (9)
C20.0224 (12)0.0225 (11)0.0239 (12)−0.0027 (10)0.0042 (10)−0.0038 (9)
O1—C21.202 (3)N1—C21.368 (3)
O2—C11.210 (3)N1—H10.8600
N1—C11.360 (3)C1—C2i1.526 (3)
C1—N1—C2125.31 (19)N1—C1—C2i117.28 (19)
C1—N1—H1117.3O1—C2—N1123.3 (2)
C2—N1—H1117.3O1—C2—C1i119.3 (2)
O2—C1—N1123.6 (2)N1—C2—C1i117.35 (18)
O2—C1—C2i119.10 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1ii0.862.483.060 (2)125
N1—H1···O2iii0.862.233.035 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.483.060 (2)125
N1—H1⋯O2ii0.862.233.035 (2)157

Symmetry codes: (i) ; (ii) .

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