Literature DB >> 21589578

2,3,4,6-Tetra-O-acetyl-2-phthalimido-β-d-glucopyran-oside.

Giuliana Gervasio1, Domenica Marabello, Federica Bertolotti.   

Abstract

In the crystal structure of the title compound, C(24)H(27)NO(11), a substituted tetra-acetyl glucopyran-oside derivative, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into ribbons propagated in [010]. The d configuration has been attributed on the basis of the synthesis and the β anomer has been determined from the structure.

Entities:  

Year:  2010        PMID: 21589578      PMCID: PMC3011788          DOI: 10.1107/S1600536810048099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Dahmen et al. (1983a ▶,b ▶, 1984 ▶); Mag­nus­son et al. (1981 ▶); Quagliotto et al. (2005 ▶). For related structures, see: Ambrosi et al. (2002 ▶); Halasz et al. (2005 ▶).

Experimental

Crystal data

C24H27NO12 M = 521.47 Monoclinic, a = 10.6447 (8) Å b = 8.3655 (8) Å c = 14.0123 (13) Å β = 92.263 (2)° V = 1246.80 (19) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.34 × 0.22 × 0.20 mm

Data collection

Bruker APEX diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.77, T max = 1.00 15243 measured reflections 3092 independent reflections 2238 reflections with I > 2σ(I) R int = 0.036 20 standard reflections every 60 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.132 S = 1.07 3092 reflections 334 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048099/cv2796sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048099/cv2796Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H27NO12F(000) = 548
Mr = 521.47Dx = 1.389 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 10.6447 (8) ÅCell parameters from 400 reflections
b = 8.3655 (8) Åθ = 3.0–23.0°
c = 14.0123 (13) ŵ = 0.11 mm1
β = 92.263 (2)°T = 293 K
V = 1246.80 (19) Å3Prism, colourless
Z = 20.34 × 0.22 × 0.20 mm
Bruker APEX diffractometer2238 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 28.3°, θmin = 1.5°
φ scansh = −14→14
Absorption correction: multi-scan (Blessing, 1995)k = 0→10
Tmin = 0.77, Tmax = 1.00l = 0→18
15243 measured reflections20 standard reflections every 60 min
3092 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0605P)2 + 0.1789P] where P = (Fo2 + 2Fc2)/3
3092 reflections(Δ/σ)max < 0.001
334 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2629 (2)0.7283 (3)0.24007 (16)0.0505 (6)
C10.3802 (3)0.8111 (5)0.2432 (3)0.0491 (9)
H1A0.44630.74580.27450.059*
C20.3624 (3)0.9652 (5)0.2968 (3)0.0451 (8)
H2A0.29831.03010.26280.054*
C30.3214 (3)0.9325 (4)0.3972 (2)0.0411 (8)
H3A0.39050.88410.43550.049*
C40.2076 (3)0.8243 (4)0.3953 (2)0.0440 (8)
H4A0.13330.88390.37220.053*
C50.2261 (3)0.6792 (5)0.3325 (3)0.0478 (9)
H5A0.29260.61210.36170.057*
O20.4087 (2)0.8446 (3)0.14973 (17)0.0539 (6)
C60.4639 (3)0.7116 (6)0.1020 (3)0.0569 (10)
H6A0.42320.61300.12010.068*
H6B0.55260.70380.12010.068*
C70.4476 (3)0.7368 (6)−0.0042 (3)0.0567 (10)
H7A0.48020.8412−0.02020.068*
H7B0.49630.6571−0.03680.068*
N10.3179 (3)0.7261 (5)−0.0376 (2)0.0558 (8)
C80.2422 (4)0.8575 (7)−0.0603 (3)0.0635 (11)
O80.2759 (4)0.9941 (5)−0.0599 (3)0.0899 (11)
C90.1155 (4)0.7921 (7)−0.0853 (3)0.0689 (13)
C100.1218 (4)0.6290 (7)−0.0788 (3)0.0733 (14)
C110.2527 (4)0.5832 (7)−0.0482 (3)0.0692 (12)
O110.2974 (3)0.4522 (5)−0.0343 (3)0.0964 (12)
C120.0040 (5)0.8685 (10)−0.1087 (4)0.0963 (19)
H12A−0.00100.9791−0.11430.116*
C13−0.1025 (5)0.7692 (14)−0.1237 (4)0.115 (3)
H13A−0.18010.8165−0.13760.138*
C14−0.0955 (6)0.6067 (15)−0.1183 (5)0.120 (3)
H14A−0.16760.5455−0.12940.144*
C150.0174 (5)0.5328 (10)−0.0968 (4)0.102 (2)
H15A0.02360.4220−0.09430.122*
O210.4786 (2)1.0518 (3)0.30267 (17)0.0527 (7)
O220.3877 (4)1.2729 (5)0.2431 (3)0.1135 (15)
C210.4783 (4)1.2067 (6)0.2740 (3)0.0664 (12)
C220.6057 (4)1.2786 (8)0.2884 (4)0.0924 (17)
H22A0.60361.38810.26770.139*
H22B0.66471.22010.25180.139*
H22C0.63101.27400.35490.139*
O310.28641 (18)1.0835 (3)0.43790 (17)0.0484 (6)
O320.4534 (2)1.0863 (4)0.5412 (2)0.0775 (9)
C310.3644 (3)1.1517 (5)0.5057 (3)0.0482 (9)
C320.3233 (3)1.3171 (5)0.5245 (3)0.0676 (12)
H32A0.37851.36450.57230.101*
H32B0.23911.31580.54660.101*
H32C0.32551.37850.46670.101*
O410.18882 (19)0.7666 (3)0.49050 (17)0.0511 (6)
O42−0.0121 (3)0.8438 (5)0.4827 (2)0.0779 (9)
C420.0715 (3)0.7777 (5)0.5246 (3)0.0519 (9)
C430.0626 (4)0.6939 (6)0.6176 (3)0.0714 (12)
H43A−0.02130.70390.63960.107*
H43B0.12090.74090.66350.107*
H43C0.08250.58290.60970.107*
O510.0126 (2)0.6793 (4)0.27174 (19)0.0653 (8)
O52−0.1385 (3)0.5437 (5)0.3397 (3)0.1090 (14)
C510.1083 (3)0.5800 (6)0.3180 (3)0.0626 (11)
H51A0.12510.48770.27860.075*
H51B0.08010.54260.37910.075*
C52−0.1077 (4)0.6487 (6)0.2894 (3)0.0684 (12)
C53−0.1945 (4)0.7581 (8)0.2382 (4)0.0872 (15)
H53D−0.27940.73200.25290.131*
H53A−0.18450.74780.17070.131*
H53B−0.17640.86600.25750.131*
U11U22U33U12U13U23
O10.0478 (12)0.0564 (15)0.0467 (13)−0.0063 (11)−0.0057 (10)−0.0029 (13)
C10.0432 (17)0.061 (2)0.043 (2)0.0059 (17)−0.0027 (14)0.0031 (18)
C20.0288 (14)0.058 (2)0.048 (2)−0.0040 (15)−0.0065 (13)−0.0030 (17)
C30.0302 (14)0.049 (2)0.0439 (19)0.0036 (14)−0.0037 (13)−0.0030 (16)
C40.0324 (14)0.052 (2)0.047 (2)−0.0034 (14)−0.0044 (13)0.0009 (17)
C50.0421 (17)0.051 (2)0.050 (2)−0.0020 (16)−0.0076 (15)0.0042 (17)
O20.0553 (14)0.0623 (17)0.0442 (14)0.0045 (13)0.0013 (11)−0.0037 (13)
C60.0454 (18)0.069 (3)0.056 (2)0.0075 (18)−0.0018 (16)−0.007 (2)
C70.0459 (18)0.071 (3)0.053 (2)−0.0039 (19)0.0065 (16)−0.010 (2)
N10.0499 (16)0.070 (2)0.0474 (18)−0.0045 (17)−0.0018 (13)−0.0030 (17)
C80.068 (3)0.077 (3)0.045 (2)−0.003 (2)0.0043 (19)0.004 (2)
O80.091 (2)0.081 (3)0.098 (3)0.000 (2)−0.001 (2)0.013 (2)
C90.051 (2)0.109 (4)0.045 (2)−0.001 (2)−0.0030 (17)0.011 (3)
C100.059 (2)0.106 (4)0.055 (3)−0.014 (3)−0.0029 (19)0.002 (3)
C110.059 (2)0.087 (4)0.061 (3)−0.015 (3)−0.001 (2)−0.007 (3)
O110.083 (2)0.076 (3)0.129 (3)−0.009 (2)−0.015 (2)−0.010 (2)
C120.073 (3)0.151 (6)0.065 (3)0.017 (4)−0.005 (2)0.021 (4)
C130.054 (3)0.226 (9)0.063 (3)0.004 (5)−0.010 (2)0.024 (5)
C140.071 (4)0.213 (9)0.076 (4)−0.046 (5)−0.015 (3)0.022 (5)
C150.078 (3)0.154 (6)0.072 (3)−0.043 (4)−0.012 (3)0.001 (4)
O210.0365 (11)0.0660 (19)0.0551 (15)−0.0086 (12)−0.0030 (10)−0.0042 (14)
O220.085 (2)0.086 (3)0.166 (4)−0.023 (2)−0.040 (2)0.050 (3)
C210.065 (3)0.073 (3)0.061 (2)−0.028 (2)0.001 (2)0.002 (2)
C220.080 (3)0.112 (4)0.086 (3)−0.051 (3)0.006 (2)−0.007 (3)
O310.0348 (10)0.0560 (15)0.0539 (15)0.0015 (11)−0.0042 (10)−0.0070 (13)
O320.0583 (15)0.087 (2)0.084 (2)0.0141 (17)−0.0288 (14)−0.0235 (19)
C310.0339 (16)0.060 (2)0.050 (2)−0.0046 (16)−0.0002 (14)−0.0076 (18)
C320.047 (2)0.067 (3)0.088 (3)−0.005 (2)−0.0027 (19)−0.016 (3)
O410.0408 (11)0.0665 (17)0.0460 (14)0.0019 (12)0.0017 (10)0.0056 (13)
O420.0414 (14)0.110 (3)0.083 (2)0.0099 (17)0.0072 (14)0.001 (2)
C420.0407 (18)0.055 (2)0.060 (2)−0.0067 (17)0.0022 (16)−0.0098 (19)
C430.079 (3)0.067 (3)0.070 (3)−0.010 (2)0.024 (2)0.001 (2)
O510.0504 (14)0.077 (2)0.0671 (17)−0.0206 (14)−0.0168 (12)0.0149 (16)
O520.075 (2)0.095 (3)0.158 (4)−0.015 (2)0.020 (2)0.042 (3)
C510.063 (2)0.062 (3)0.061 (3)−0.017 (2)−0.0092 (19)0.006 (2)
C520.057 (2)0.068 (3)0.080 (3)−0.015 (2)−0.005 (2)−0.004 (3)
C530.063 (3)0.106 (4)0.091 (3)−0.006 (3)−0.020 (2)0.000 (3)
O1—C51.428 (4)C12—H12A0.9300
O1—C11.427 (4)C13—C141.363 (12)
C1—O21.384 (4)C13—H13A0.9300
C1—C21.508 (5)C14—C151.374 (10)
C1—H1A0.9800C14—H14A0.9300
C2—O211.433 (4)C15—H15A0.9300
C2—C31.515 (5)O21—C211.357 (6)
C2—H2A0.9800O22—C211.179 (5)
C3—O311.441 (4)C21—C221.490 (6)
C3—C41.511 (4)C22—H22A0.9600
C3—H3A0.9800C22—H22B0.9600
C4—O411.440 (4)C22—H22C0.9600
C4—C51.516 (5)O31—C311.362 (4)
C4—H4A0.9800O32—C311.186 (4)
C5—C511.510 (5)C31—C321.478 (6)
C5—H5A0.9800C32—H32A0.9600
O2—C61.436 (5)C32—H32B0.9600
C6—C71.506 (5)C32—H32C0.9600
C6—H6A0.9700O41—C421.357 (4)
C6—H6B0.9700O42—C421.184 (5)
C7—N11.443 (4)C42—C431.486 (6)
C7—H7A0.9700C43—H43A0.9600
C7—H7B0.9700C43—H43B0.9600
N1—C111.387 (6)C43—H43C0.9600
N1—C81.392 (6)O51—C521.338 (5)
C8—O81.198 (6)O51—C511.448 (5)
C8—C91.485 (6)O52—C521.181 (6)
C9—C101.368 (7)C51—H51A0.9700
C9—C121.376 (7)C51—H51B0.9700
C10—C151.387 (7)C52—C531.467 (7)
C10—C111.492 (7)C53—H53D0.9600
C11—O111.208 (6)C53—H53A0.9600
C12—C131.414 (10)C53—H53B0.9600
C5—O1—C1112.5 (2)C9—C12—C13116.2 (7)
O2—C1—O1107.1 (3)C9—C12—H12A121.9
O2—C1—C2109.5 (3)C13—C12—H12A121.9
O1—C1—C2107.6 (3)C14—C13—C12122.4 (7)
O2—C1—H1A110.8C14—C13—H13A118.8
O1—C1—H1A110.8C12—C13—H13A118.8
C2—C1—H1A110.8C13—C14—C15120.4 (7)
O21—C2—C1109.6 (3)C13—C14—H14A119.8
O21—C2—C3108.5 (3)C15—C14—H14A119.8
C1—C2—C3110.8 (3)C14—C15—C10117.8 (8)
O21—C2—H2A109.3C14—C15—H15A121.1
C1—C2—H2A109.3C10—C15—H15A121.1
C3—C2—H2A109.3C21—O21—C2118.3 (3)
O31—C3—C4108.2 (2)O22—C21—O21123.3 (4)
O31—C3—C2107.3 (3)O22—C21—C22125.9 (5)
C4—C3—C2110.6 (3)O21—C21—C22110.7 (4)
O31—C3—H3A110.2C21—C22—H22A109.5
C4—C3—H3A110.2C21—C22—H22B109.5
C2—C3—H3A110.2H22A—C22—H22B109.5
O41—C4—C3109.0 (2)C21—C22—H22C109.5
O41—C4—C5107.2 (3)H22A—C22—H22C109.5
C3—C4—C5111.6 (3)H22B—C22—H22C109.5
O41—C4—H4A109.7C31—O31—C3118.9 (3)
C3—C4—H4A109.7O32—C31—O31123.7 (4)
C5—C4—H4A109.7O32—C31—C32126.5 (4)
O1—C5—C51107.0 (3)O31—C31—C32109.9 (3)
O1—C5—C4110.0 (3)C31—C32—H32A109.5
C51—C5—C4113.1 (3)C31—C32—H32B109.5
O1—C5—H5A108.9H32A—C32—H32B109.5
C51—C5—H5A108.9C31—C32—H32C109.5
C4—C5—H5A108.9H32A—C32—H32C109.5
C1—O2—C6113.1 (3)H32B—C32—H32C109.5
O2—C6—C7108.6 (3)C42—O41—C4117.8 (3)
O2—C6—H6A110.0O42—C42—O41122.8 (4)
C7—C6—H6A110.0O42—C42—C43125.6 (4)
O2—C6—H6B110.0O41—C42—C43111.6 (3)
C7—C6—H6B110.0C42—C43—H43A109.5
H6A—C6—H6B108.4C42—C43—H43B109.5
N1—C7—C6112.6 (3)H43A—C43—H43B109.5
N1—C7—H7A109.1C42—C43—H43C109.5
C6—C7—H7A109.1H43A—C43—H43C109.5
N1—C7—H7B109.1H43B—C43—H43C109.5
C6—C7—H7B109.1C52—O51—C51118.0 (3)
H7A—C7—H7B107.8O51—C51—C5108.1 (3)
C11—N1—C8111.9 (4)O51—C51—H51A110.1
C11—N1—C7123.8 (4)C5—C51—H51A110.1
C8—N1—C7124.3 (4)O51—C51—H51B110.1
O8—C8—N1125.6 (4)C5—C51—H51B110.1
O8—C8—C9128.5 (5)H51A—C51—H51B108.4
N1—C8—C9105.9 (4)O52—C52—O51122.9 (5)
C10—C9—C12121.2 (5)O52—C52—C53124.8 (4)
C10—C9—C8108.1 (4)O51—C52—C53112.3 (4)
C12—C9—C8130.7 (6)C52—C53—H53D109.5
C9—C10—C15122.0 (5)C52—C53—H53A109.5
C9—C10—C11108.5 (4)H53D—C53—H53A109.5
C15—C10—C11129.5 (6)C52—C53—H53B109.5
O11—C11—N1125.0 (4)H53D—C53—H53B109.5
O11—C11—C10129.5 (5)H53A—C53—H53B109.5
N1—C11—C10105.5 (5)
D—H···AD—HH···AD···AD—H···A
C32—H32B···O42i0.962.453.317 (5)151
C43—H43C···O42ii0.962.483.284 (5)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C32—H32B⋯O42i0.962.453.317 (5)151
C43—H43C⋯O42ii0.962.483.284 (5)141

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and properties of new glucocationic surfactants: model structures for marking cationic surfactants with carbohydrates.

Authors:  Pierluigi Quagliotto; Guido Viscardi; Claudia Barolo; Domenico D'Angelo; Ermanno Barni; Carlotta Compari; Elenia Duce; Emilia Fisicaro
Journal:  J Org Chem       Date:  2005-11-25       Impact factor: 4.354

3.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

4.  Synthesis of spacer-arm, lipid, and ethyl glycosides of the trisaccharide portion [alpha-D-Gal-(1----4)-beta-D-Gal-(1----4)-beta-D-Glc] of the blood-group Pk antigen: preparation of neoglycoproteins.

Authors:  J Dahmén; T Frejd; G Magnusson; G Noori; A S Carlström
Journal:  Carbohydr Res       Date:  1984-04-02       Impact factor: 2.104

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.