Literature DB >> 21589552

tert-Butyl 6-amino-3,4-dihydro-2H-1,4-benzoxazine-4-carboxyl-ate.

Xiao-Bo Gu1, Meng-Jun Jiang, Gang-Ming Cai, Yao-Yuan Zhou.   

Abstract

The title mol-ecule, C(13)H(18)N(2)O(3), contains a benzene ring fused to an oxazine ring and one tert-but-oxy-carbonyl group bound to the N atom of the oxazine ring. A weak intra-molecular C-H⋯O inter-action occurs. In the crystal, inter-molecular N-H⋯O and C-H⋯O hydrogen bonds stack the mol-ecules down the b axis. Weak C-H⋯N contacts connect the stacks, generating a three-dimensional network.

Entities:  

Year:  2010        PMID: 21589552      PMCID: PMC3011429          DOI: 10.1107/S160053681004777X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of phenyl­morpholine derivatives, see: Albanese et al. (2003 ▶); La et al. (2008 ▶); McCormick et al. (2008 ▶). For related structures, see: Chen et al. (2003 ▶); Olmstead et al. (2003 ▶); Vergeer et al. (1999 ▶).

Experimental

Crystal data

C13H18N2O3 M = 250.29 Monoclinic, a = 9.439 (4) Å b = 7.941 (3) Å c = 17.598 (7) Å β = 97.235 (6)° V = 1308.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 103 K 0.37 × 0.27 × 0.21 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer 13574 measured reflections 3816 independent reflections 3118 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.106 S = 1.00 3816 reflections 174 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004777X/sj5053sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004777X/sj5053Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O3F(000) = 536
Mr = 250.29Dx = 1.270 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3844 reflections
a = 9.439 (4) Åθ = 3.6–30.0°
b = 7.941 (3) ŵ = 0.09 mm1
c = 17.598 (7) ÅT = 103 K
β = 97.235 (6)°Block, colorless
V = 1308.6 (8) Å30.37 × 0.27 × 0.21 mm
Z = 4
Rigaku AFC10/Saturn724+ diffractometer3118 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.035
graphiteθmax = 30.0°, θmin = 2.3°
Detector resolution: 28.5714 pixels mm-1h = −13→13
φ and ω scansk = −11→11
13574 measured reflectionsl = −22→24
3816 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0431P)2 + 0.506P] where P = (Fo2 + 2Fc2)/3
3816 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.29075 (9)0.23440 (12)0.77441 (5)0.0238 (2)
O20.27308 (9)0.60469 (11)0.55727 (5)0.01769 (18)
O30.47393 (9)0.70065 (11)0.62807 (5)0.01852 (19)
N10.36964 (10)0.45345 (12)0.65823 (6)0.0148 (2)
N20.84770 (11)0.48161 (15)0.80355 (7)0.0226 (2)
C10.46953 (11)0.41260 (14)0.72306 (6)0.0138 (2)
C20.61108 (12)0.46877 (14)0.73224 (6)0.0153 (2)
H20.64150.54400.69560.018*
C30.70861 (12)0.41698 (15)0.79396 (7)0.0166 (2)
C40.66399 (13)0.30549 (15)0.84764 (7)0.0191 (2)
H40.72940.26840.88980.023*
C50.52391 (13)0.24943 (15)0.83905 (7)0.0200 (2)
H50.49410.17380.87570.024*
C60.42614 (12)0.30153 (15)0.77789 (7)0.0172 (2)
C70.18660 (13)0.31174 (17)0.71949 (8)0.0243 (3)
H7A0.15740.42120.73950.029*
H7B0.10100.23890.71050.029*
C80.24682 (13)0.33916 (16)0.64505 (7)0.0220 (3)
H8A0.27710.23010.62510.026*
H8B0.17280.38840.60660.026*
C90.37957 (11)0.59648 (14)0.61556 (6)0.0140 (2)
C100.27444 (13)0.74056 (16)0.49941 (7)0.0195 (2)
C110.25934 (15)0.91226 (17)0.53576 (8)0.0268 (3)
H11A0.17900.91020.56600.040*
H11B0.24190.99780.49550.040*
H11C0.34740.93950.56920.040*
C120.14095 (16)0.7002 (2)0.44419 (8)0.0338 (3)
H12A0.14900.58640.42360.051*
H12B0.13140.78170.40200.051*
H12C0.05670.70650.47140.051*
C130.40675 (16)0.7250 (2)0.45926 (8)0.0305 (3)
H13A0.49100.75760.49460.046*
H13B0.39770.79920.41440.046*
H13C0.41710.60820.44290.046*
H2A0.8731 (17)0.538 (2)0.7639 (10)0.030 (4)*
H2B0.9124 (19)0.408 (2)0.8234 (10)0.039 (5)*
U11U22U33U12U13U23
O10.0165 (4)0.0260 (5)0.0295 (5)−0.0026 (3)0.0048 (3)0.0108 (4)
O20.0174 (4)0.0176 (4)0.0170 (4)−0.0026 (3)−0.0021 (3)0.0026 (3)
O30.0171 (4)0.0165 (4)0.0210 (4)−0.0041 (3)−0.0015 (3)0.0022 (3)
N10.0124 (4)0.0144 (5)0.0174 (5)−0.0023 (3)0.0006 (3)0.0006 (4)
N20.0170 (5)0.0221 (6)0.0268 (6)−0.0006 (4)−0.0040 (4)0.0055 (5)
C10.0147 (5)0.0122 (5)0.0146 (5)0.0021 (4)0.0023 (4)−0.0006 (4)
C20.0159 (5)0.0137 (5)0.0164 (5)0.0012 (4)0.0029 (4)0.0006 (4)
C30.0164 (5)0.0145 (5)0.0184 (5)0.0022 (4)0.0007 (4)−0.0026 (4)
C40.0220 (6)0.0182 (6)0.0167 (5)0.0054 (4)0.0002 (4)0.0012 (4)
C50.0243 (6)0.0180 (6)0.0185 (6)0.0027 (5)0.0057 (4)0.0045 (5)
C60.0161 (5)0.0162 (5)0.0201 (5)0.0009 (4)0.0057 (4)0.0012 (4)
C70.0151 (5)0.0241 (7)0.0337 (7)−0.0021 (5)0.0025 (5)0.0094 (5)
C80.0191 (6)0.0200 (6)0.0257 (6)−0.0085 (5)−0.0015 (5)0.0034 (5)
C90.0136 (5)0.0147 (5)0.0138 (5)0.0014 (4)0.0022 (4)−0.0015 (4)
C100.0216 (6)0.0199 (6)0.0160 (5)−0.0003 (5)−0.0017 (4)0.0041 (4)
C110.0323 (7)0.0191 (6)0.0280 (7)0.0036 (5)−0.0006 (5)0.0032 (5)
C120.0350 (8)0.0345 (8)0.0274 (7)−0.0065 (6)−0.0143 (6)0.0071 (6)
C130.0328 (7)0.0392 (8)0.0209 (6)0.0035 (6)0.0090 (5)0.0066 (6)
O1—C61.3789 (15)C5—H50.9500
O1—C71.4278 (15)C7—C81.5081 (19)
O2—C91.3443 (13)C7—H7A0.9900
O2—C101.4848 (15)C7—H7B0.9900
O3—C91.2152 (14)C8—H8A0.9900
N1—C91.3713 (15)C8—H8B0.9900
N1—C11.4230 (14)C10—C131.5154 (19)
N1—C81.4675 (15)C10—C111.5204 (19)
N2—C31.3999 (16)C10—C121.5253 (17)
N2—H2A0.887 (17)C11—H11A0.9800
N2—H2B0.884 (19)C11—H11B0.9800
C1—C21.3985 (16)C11—H11C0.9800
C1—C61.4058 (16)C12—H12A0.9800
C2—C31.3945 (16)C12—H12B0.9800
C2—H20.9500C12—H12C0.9800
C3—C41.3977 (17)C13—H13A0.9800
C4—C51.3853 (18)C13—H13B0.9800
C4—H40.9500C13—H13C0.9800
C5—C61.3896 (17)
C6—O1—C7114.78 (10)N1—C8—H8A109.8
C9—O2—C10119.23 (9)C7—C8—H8A109.8
C9—N1—C1122.94 (9)N1—C8—H8B109.8
C9—N1—C8122.19 (10)C7—C8—H8B109.8
C1—N1—C8114.60 (9)H8A—C8—H8B108.3
C3—N2—H2A115.6 (10)O3—C9—O2124.46 (10)
C3—N2—H2B113.3 (12)O3—C9—N1124.31 (10)
H2A—N2—H2B113.7 (16)O2—C9—N1111.22 (9)
C2—C1—C6118.52 (10)O2—C10—C13109.84 (10)
C2—C1—N1123.15 (10)O2—C10—C11110.72 (10)
C6—C1—N1118.19 (10)C13—C10—C11113.31 (12)
C3—C2—C1121.55 (11)O2—C10—C12101.90 (10)
C3—C2—H2119.2C13—C10—C12110.43 (12)
C1—C2—H2119.2C11—C10—C12110.06 (11)
C2—C3—C4119.19 (11)C10—C11—H11A109.5
C2—C3—N2120.19 (11)C10—C11—H11B109.5
C4—C3—N2120.57 (11)H11A—C11—H11B109.5
C5—C4—C3119.64 (11)C10—C11—H11C109.5
C5—C4—H4120.2H11A—C11—H11C109.5
C3—C4—H4120.2H11B—C11—H11C109.5
C4—C5—C6121.37 (11)C10—C12—H12A109.5
C4—C5—H5119.3C10—C12—H12B109.5
C6—C5—H5119.3H12A—C12—H12B109.5
O1—C6—C5116.15 (11)C10—C12—H12C109.5
O1—C6—C1124.09 (10)H12A—C12—H12C109.5
C5—C6—C1119.73 (11)H12B—C12—H12C109.5
O1—C7—C8110.33 (10)C10—C13—H13A109.5
O1—C7—H7A109.6C10—C13—H13B109.5
C8—C7—H7A109.6H13A—C13—H13B109.5
O1—C7—H7B109.6C10—C13—H13C109.5
C8—C7—H7B109.6H13A—C13—H13C109.5
H7A—C7—H7B108.1H13B—C13—H13C109.5
N1—C8—C7109.19 (10)
C9—N1—C1—C2−26.57 (17)N1—C1—C6—O1−2.62 (17)
C8—N1—C1—C2159.29 (11)C2—C1—C6—C5−0.48 (17)
C9—N1—C1—C6157.74 (11)N1—C1—C6—C5175.41 (11)
C8—N1—C1—C6−16.40 (15)C6—O1—C7—C844.10 (15)
C6—C1—C2—C30.09 (17)C9—N1—C8—C7−126.86 (12)
N1—C1—C2—C3−175.59 (10)C1—N1—C8—C747.33 (14)
C1—C2—C3—C40.40 (17)O1—C7—C8—N1−61.83 (14)
C1—C2—C3—N2−176.97 (11)C10—O2—C9—O35.54 (17)
C2—C3—C4—C5−0.49 (17)C10—O2—C9—N1−173.22 (9)
N2—C3—C4—C5176.87 (11)C1—N1—C9—O30.71 (17)
C3—C4—C5—C60.10 (18)C8—N1—C9—O3174.42 (11)
C7—O1—C6—C5169.42 (11)C1—N1—C9—O2179.48 (10)
C7—O1—C6—C1−12.48 (17)C8—N1—C9—O2−6.81 (15)
C4—C5—C6—O1178.58 (11)C9—O2—C10—C1361.25 (14)
C4—C5—C6—C10.40 (18)C9—O2—C10—C11−64.64 (14)
C2—C1—C6—O1−178.52 (11)C9—O2—C10—C12178.33 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O3i0.885 (17)2.088 (17)2.9581 (19)167.4 (16)
C2—H2···O30.952.232.7981 (18)117
C7—H7A···O1ii0.992.553.364 (2)139
C13—H13B···N2iii0.982.613.586 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O3i0.885 (17)2.088 (17)2.9581 (19)167.4 (16)
C2—H2⋯O30.952.232.7981 (18)117
C7—H7A⋯O1ii0.992.553.364 (2)139
C13—H13B⋯N20.982.613.586 (2)172

Symmetry codes: (i) ; (ii) .

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