Literature DB >> 21589526

4-(9,10-Dioxo-9,10-dihydro-anthracen-1-yl)-4-oxobutanoic acid.

Yi Li, Qi-Sheng Lu, Rong-Qing Wei, Xiao-Ning Liu, Fang-Shi Li.   

Abstract

In the title compound, C(18)H(12)O(5), the anthracene moiety is almost planar (r.m.s. deviation = 0.0399 Å). In the crystal, mol-ecules are linked to each other by inter-molecular O-H⋯O and weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21589526      PMCID: PMC3011440          DOI: 10.1107/S160053681004732X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For applications of natural and synthetic anthraquinones, see: Brown (1980 ▶). For their activity, see: Johnson et al. (1997 ▶). For the synthesis, see: Inbasekaran et al. (1980 ▶).

Experimental

Crystal data

C18H12O5 M = 308.28 Monoclinic, a = 5.168 (1) Å b = 19.523 (4) Å c = 14.367 (3) Å β = 99.58 (3)° V = 1429.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.979, T max = 0.990 2892 measured reflections 2593 independent reflections 1048 reflections with I > 2σ(I) R int = 0.077 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.161 S = 1.00 2593 reflections 208 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004732X/bq2254sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004732X/bq2254Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H12O5F(000) = 640
Mr = 308.28Dx = 1.433 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 5.168 (1) Åθ = 8–12°
b = 19.523 (4) ŵ = 0.11 mm1
c = 14.367 (3) ÅT = 293 K
β = 99.58 (3)°Needle, colourless
V = 1429.3 (5) Å30.20 × 0.10 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1048 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.077
graphiteθmax = 25.3°, θmin = 1.8°
ω/2θ scansh = 0→6
Absorption correction: ψ scan (North et al., 1968)k = 0→23
Tmin = 0.979, Tmax = 0.990l = −17→17
2892 measured reflections3 standard reflections every 200 reflections
2593 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.078Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.040P)2] where P = (Fo2 + 2Fc2)/3
2593 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6562 (8)0.45510 (18)0.4314 (3)0.0687 (12)
O20.2523 (6)0.26823 (17)0.6393 (2)0.0534 (10)
O3−0.2936 (7)0.21707 (19)0.5131 (3)0.0722 (13)
O4−0.2825 (7)0.04974 (17)0.4635 (3)0.0580 (11)
O5−0.3291 (8)0.0347 (2)0.6115 (3)0.0796 (13)
H5A−0.44600.00900.58660.119*
C1−0.0859 (11)0.2918 (3)0.3566 (4)0.0590 (16)
H1A−0.23050.26620.32930.071*
C20.0084 (12)0.3422 (3)0.3052 (4)0.0656 (17)
H2A−0.06870.34990.24290.079*
C30.2165 (11)0.3814 (3)0.3457 (4)0.0556 (15)
H3A0.27760.41610.31070.067*
C40.3375 (10)0.3703 (2)0.4378 (4)0.0412 (13)
C50.5697 (10)0.4127 (3)0.4790 (4)0.0467 (14)
C60.6852 (10)0.4001 (2)0.5783 (3)0.0408 (13)
C70.9026 (11)0.4383 (3)0.6188 (4)0.0555 (15)
H7A0.97260.47120.58320.067*
C81.0149 (11)0.4274 (3)0.7122 (4)0.0611 (17)
H8A1.15750.45370.73970.073*
C90.9160 (11)0.3780 (3)0.7640 (4)0.0640 (17)
H9A0.99280.37020.82640.077*
C100.7023 (10)0.3397 (3)0.7236 (4)0.0548 (15)
H10A0.63720.30600.75930.066*
C110.5839 (9)0.3501 (2)0.6323 (4)0.0425 (13)
C120.3528 (10)0.3090 (2)0.5912 (4)0.0425 (13)
C130.2415 (9)0.3191 (2)0.4900 (3)0.0365 (12)
C140.0322 (9)0.2783 (2)0.4497 (3)0.0392 (12)
C15−0.0699 (10)0.2173 (3)0.4968 (4)0.0484 (14)
C160.0972 (9)0.1546 (2)0.5123 (4)0.0502 (14)
H16A0.27790.16790.53400.060*
H16B0.08980.13050.45290.060*
C170.0093 (10)0.1069 (2)0.5841 (4)0.0526 (15)
H17A0.15670.07840.61090.063*
H17B−0.03940.13430.63480.063*
C18−0.2128 (10)0.0622 (2)0.5464 (4)0.0493 (14)
U11U22U33U12U13U23
O10.081 (3)0.059 (3)0.071 (3)−0.018 (2)0.029 (2)0.018 (2)
O20.061 (3)0.053 (2)0.048 (2)−0.0200 (19)0.012 (2)0.0045 (18)
O30.035 (2)0.068 (3)0.119 (4)−0.007 (2)0.027 (2)−0.005 (2)
O40.060 (3)0.061 (2)0.049 (2)−0.026 (2)−0.003 (2)0.0015 (19)
O50.088 (3)0.086 (3)0.067 (3)−0.036 (3)0.021 (2)−0.005 (2)
C10.049 (4)0.060 (4)0.065 (4)0.000 (3)0.001 (3)−0.015 (3)
C20.077 (5)0.069 (4)0.044 (4)0.003 (4)−0.006 (3)−0.002 (3)
C30.072 (4)0.051 (4)0.046 (4)0.000 (3)0.018 (3)0.007 (3)
C40.043 (3)0.041 (3)0.041 (3)−0.004 (3)0.011 (3)0.003 (2)
C50.054 (4)0.038 (3)0.052 (4)0.000 (3)0.019 (3)0.002 (3)
C60.045 (3)0.030 (3)0.050 (3)−0.004 (3)0.014 (3)−0.005 (3)
C70.053 (4)0.046 (3)0.073 (4)−0.006 (3)0.025 (3)−0.014 (3)
C80.051 (4)0.062 (4)0.069 (4)−0.005 (3)0.006 (3)−0.019 (3)
C90.070 (4)0.068 (4)0.051 (4)−0.012 (4)0.002 (3)−0.011 (3)
C100.054 (4)0.062 (4)0.046 (4)−0.010 (3)0.000 (3)−0.005 (3)
C110.038 (3)0.039 (3)0.050 (3)0.002 (3)0.006 (3)−0.009 (3)
C120.041 (3)0.037 (3)0.052 (4)−0.002 (3)0.013 (3)−0.003 (3)
C130.031 (3)0.041 (3)0.038 (3)0.003 (2)0.008 (2)−0.009 (3)
C140.031 (3)0.039 (3)0.047 (3)0.005 (3)0.001 (3)−0.006 (3)
C150.039 (3)0.039 (3)0.067 (4)−0.003 (3)0.008 (3)−0.009 (3)
C160.038 (3)0.044 (3)0.071 (4)−0.009 (3)0.016 (3)−0.013 (3)
C170.051 (3)0.038 (3)0.068 (4)−0.007 (3)0.008 (3)−0.006 (3)
C180.048 (4)0.038 (3)0.061 (4)−0.010 (3)0.007 (3)0.004 (3)
O1—C51.206 (5)C7—H7A0.9300
O2—C121.225 (5)C8—C91.368 (7)
O3—C151.218 (5)C8—H8A0.9300
O4—C181.210 (6)C9—C101.379 (6)
O5—C181.308 (6)C9—H9A0.9300
O5—H5A0.8200C10—C111.367 (6)
C1—C21.367 (7)C10—H10A0.9300
C1—C141.400 (6)C11—C121.478 (6)
C1—H1A0.9300C12—C131.484 (6)
C2—C31.368 (7)C13—C141.389 (6)
C2—H2A0.9300C14—C151.508 (6)
C3—C41.383 (6)C15—C161.494 (6)
C3—H3A0.9300C16—C171.513 (6)
C4—C131.391 (6)C16—H16A0.9700
C4—C51.496 (6)C16—H16B0.9700
C5—C61.472 (6)C17—C181.472 (6)
C6—C71.393 (6)C17—H17A0.9700
C6—C111.402 (6)C17—H17B0.9700
C7—C81.388 (7)
C18—O5—H5A109.5C10—C11—C6119.1 (5)
C2—C1—C14120.8 (5)C10—C11—C12120.4 (5)
C2—C1—H1A119.6C6—C11—C12120.5 (5)
C14—C1—H1A119.6O2—C12—C11121.1 (5)
C1—C2—C3119.9 (5)O2—C12—C13120.5 (5)
C1—C2—H2A120.0C11—C12—C13118.4 (4)
C3—C2—H2A120.0C14—C13—C4120.7 (5)
C2—C3—C4121.2 (5)C14—C13—C12118.7 (5)
C2—C3—H3A119.4C4—C13—C12120.6 (5)
C4—C3—H3A119.4C13—C14—C1118.4 (5)
C3—C4—C13118.9 (5)C13—C14—C15124.9 (5)
C3—C4—C5119.8 (5)C1—C14—C15116.6 (5)
C13—C4—C5121.3 (5)O3—C15—C16120.8 (5)
O1—C5—C6122.4 (5)O3—C15—C14120.3 (5)
O1—C5—C4120.2 (5)C16—C15—C14118.6 (4)
C6—C5—C4117.4 (5)C15—C16—C17112.0 (4)
C7—C6—C11119.4 (5)C15—C16—H16A109.2
C7—C6—C5118.9 (5)C17—C16—H16A109.2
C11—C6—C5121.6 (5)C15—C16—H16B109.2
C8—C7—C6120.0 (5)C17—C16—H16B109.2
C8—C7—H7A120.0H16A—C16—H16B107.9
C6—C7—H7A120.0C18—C17—C16114.8 (5)
C9—C8—C7120.1 (6)C18—C17—H17A108.6
C9—C8—H8A120.0C16—C17—H17A108.6
C7—C8—H8A120.0C18—C17—H17B108.6
C8—C9—C10119.9 (6)C16—C17—H17B108.6
C8—C9—H9A120.1H17A—C17—H17B107.6
C10—C9—H9A120.1O4—C18—O5121.6 (5)
C11—C10—C9121.5 (6)O4—C18—C17124.5 (5)
C11—C10—H10A119.2O5—C18—C17113.8 (5)
C9—C10—H10A119.2
C14—C1—C2—C3−1.8 (8)C10—C11—C12—C13−176.1 (4)
C1—C2—C3—C41.1 (8)C6—C11—C12—C133.6 (6)
C2—C3—C4—C13−1.2 (8)C3—C4—C13—C141.8 (7)
C2—C3—C4—C5178.2 (5)C5—C4—C13—C14−177.5 (4)
C3—C4—C5—O1−2.2 (7)C3—C4—C13—C12−175.4 (4)
C13—C4—C5—O1177.1 (5)C5—C4—C13—C125.3 (7)
C3—C4—C5—C6178.1 (4)O2—C12—C13—C14−4.1 (7)
C13—C4—C5—C6−2.6 (7)C11—C12—C13—C14177.0 (4)
O1—C5—C6—C7−0.1 (7)O2—C12—C13—C4173.2 (4)
C4—C5—C6—C7179.6 (4)C11—C12—C13—C4−5.8 (6)
O1—C5—C6—C11−179.3 (5)C4—C13—C14—C1−2.5 (7)
C4—C5—C6—C110.4 (7)C12—C13—C14—C1174.8 (4)
C11—C6—C7—C8−0.8 (7)C4—C13—C14—C15173.8 (4)
C5—C6—C7—C8180.0 (5)C12—C13—C14—C15−8.9 (7)
C6—C7—C8—C91.5 (8)C2—C1—C14—C132.4 (7)
C7—C8—C9—C10−0.9 (8)C2—C1—C14—C15−174.2 (5)
C8—C9—C10—C11−0.4 (8)C13—C14—C15—O3118.0 (6)
C9—C10—C11—C61.1 (8)C1—C14—C15—O3−65.7 (7)
C9—C10—C11—C12−179.2 (5)C13—C14—C15—C16−69.1 (6)
C7—C6—C11—C10−0.4 (7)C1—C14—C15—C16107.2 (5)
C5—C6—C11—C10178.7 (5)O3—C15—C16—C17−24.0 (7)
C7—C6—C11—C12179.8 (4)C14—C15—C16—C17163.1 (4)
C5—C6—C11—C12−1.1 (7)C15—C16—C17—C1881.7 (5)
C10—C11—C12—O24.9 (7)C16—C17—C18—O418.2 (7)
C6—C11—C12—O2−175.3 (4)C16—C17—C18—O5−163.3 (4)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O4i0.821.862.681 (6)177
C7—H7A···O1ii0.932.433.255 (7)147
C16—H16A···O3iii0.972.483.375 (6)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O4i0.821.862.681 (6)177
C7—H7A⋯O1ii0.932.433.255 (7)147
C16—H16A⋯O3iii0.972.483.375 (6)154

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Antitumor agents--CLXVII. Synthesis and structure-activity correlations of the cytotoxic anthraquinone 1,4-bis-(2,3-epoxypropylamino)-9,10-anthracenedione, and of related compounds.

Authors:  M G Johnson; H Kiyokawa; S Tani; J Koyama; S L Morris-Natschke; A Mauger; M M Bowers-Daines; B C Lange; K H Lee
Journal:  Bioorg Med Chem       Date:  1997-08       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and mutagenicity of A-ring reduced analogues of 7,12-dimethylbenz[a]anthracene.

Authors:  M N Inbasekaran; D T Witiak; K Barone; J C Loper
Journal:  J Med Chem       Date:  1980-03       Impact factor: 7.446

Review 4.  A review of the genetic effects of naturally occurring flavonoids, anthraquinones and related compounds.

Authors:  J P Brown
Journal:  Mutat Res       Date:  1980-05       Impact factor: 2.433

  4 in total

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