Literature DB >> 21589483

2-But-oxy-N-[2-(diethyl-amino)-eth-yl]quinoline-4-carboxamide (dibucaine).

Bernard Van Eerdenbrugh, Phillip E Fanwick, Lynne S Taylor.   

Abstract

The mol-ecular conformation of the title compound, C(20)H(29)N(3)O(2), is stabilized by an intra-molecular C-H⋯O hydrogen bond. The orientation of the amide group to the ring system is characterized by a C-C-C-O dihedral angle of 137.5 (3)°. In the crystal, inter-molecular N-H⋯O hydrogen bonds between the amide groups form C(4) chains running parallel to the a axis.

Entities:  

Year:  2010        PMID: 21589483      PMCID: PMC3011580          DOI: 10.1107/S1600536810045460

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a monograph on dibucaine, see: Sweetman (2009 ▶). For a comparison of the vasoactivity of dibucaine with other amide and ester local anaesthetics, see: Willatts & Reynolds (1985 ▶). For the initial crystal structure determination of dibucaine hydro­chloride monohydrate, see: Hayward & Donohue (1977 ▶). For the subsequent revision of parameters, bond distances and bond angles, see Donohue & Hayward (1980 ▶). Outlier data were removed using a local program based on the method of Prince & Nicholson (1983 ▶).

Experimental

Crystal data

C20H29N3O2 M = 343.47 Triclinic, a = 4.9323 (1) Å b = 7.2044 (1) Å c = 26.9914 (19) Å α = 94.080 (7)° β = 90.611 (6)° γ = 94.728 (7)° V = 953.30 (7) Å3 Z = 2 Cu Kα radiation μ = 0.62 mm−1 T = 150 K 0.20 × 0.20 × 0.06 mm

Data collection

Rigaku Rapid II diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2001 ▶) T min = 0.845, T max = 0.966 22671 measured reflections 2786 independent reflections 1829 reflections with I > 2σ(I) R int = 0.096

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.168 S = 1.05 2786 reflections 234 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and local programs. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045460/rz2498sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045460/rz2498Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 1
C20H29N3O2Z = 2
Mr = 343.47F(000) = 372
Triclinic, P1Dx = 1.197 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 4.9323 (1) ÅCell parameters from 22671 reflections
b = 7.2044 (1) Åθ = 6–66°
c = 26.9914 (19) ŵ = 0.62 mm1
α = 94.080 (7)°T = 150 K
β = 90.611 (6)°Plate, colourless
γ = 94.728 (7)°0.20 × 0.20 × 0.06 mm
V = 953.30 (7) Å3
Rigaku Rapid II diffractometer1829 reflections with I > 2σ(I)
confocal opticsRint = 0.096
ω scansθmax = 66.6°, θmin = 6.5°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2001)h = −5→5
Tmin = 0.845, Tmax = 0.966k = −8→8
22671 measured reflectionsl = −32→32
2786 independent reflections
Refinement on F2H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0819P)2] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.064(Δ/σ)max < 0.001
wR(F2) = 0.168Δρmax = 0.28 e Å3
S = 1.05Δρmin = −0.22 e Å3
2786 reflectionsExtinction correction: (SHELXL97; Sheldrick 2008)
234 parametersExtinction coefficient: 0.32E-02
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Outlier data were removed using a local program based on the method of Prince and Nicholson (1983).Refinement on F2 for ALL reflections except for 0 with very negative F2 or flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating R_factor_obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O110.7912 (3)0.4509 (2)0.20477 (6)0.0463 (5)
O31−0.0013 (3)0.4421 (2)0.36166 (6)0.0469 (5)
N40.2537 (4)0.1888 (3)0.34861 (7)0.0416 (6)
N120.3625 (5)0.5263 (3)0.19137 (7)0.0382 (6)
N150.2615 (4)0.8145 (3)0.08439 (7)0.0409 (6)
C10.4443 (5)0.3476 (3)0.26107 (8)0.0362 (7)
C20.2628 (5)0.4293 (3)0.29099 (8)0.0388 (7)
C30.1742 (5)0.3452 (3)0.33440 (9)0.0399 (7)
C50.4357 (5)0.1009 (3)0.31830 (8)0.0392 (7)
C60.5198 (5)−0.0696 (3)0.33278 (9)0.0460 (8)
C70.7017 (5)−0.1636 (3)0.30513 (9)0.0484 (8)
C80.8064 (5)−0.0917 (3)0.26159 (9)0.0473 (8)
C90.7263 (5)0.0726 (3)0.24632 (8)0.0430 (7)
C100.5402 (5)0.1733 (3)0.27428 (8)0.0370 (7)
C110.5499 (6)0.4428 (3)0.21690 (9)0.0384 (7)
C130.4394 (4)0.6311 (3)0.14897 (8)0.0392 (7)
C140.1956 (5)0.7230 (3)0.13009 (8)0.0447 (8)
C160.2090 (5)0.6808 (3)0.04102 (8)0.0456 (8)
C170.3601 (5)0.7366 (4)−0.00472 (8)0.0515 (8)
C180.1034 (5)0.9769 (3)0.08026 (8)0.0489 (8)
C190.2050 (6)1.1414 (3)0.11548 (9)0.0644 (9)
C32−0.0885 (5)0.3722 (4)0.40823 (8)0.0475 (8)
C33−0.2632 (5)0.5140 (4)0.43239 (9)0.0491 (8)
C34−0.1155 (5)0.7061 (4)0.44398 (9)0.0528 (8)
C35−0.2952 (5)0.8435 (4)0.47007 (9)0.0603 (9)
H20.19510.54310.28280.047*
H60.4492−0.11970.36210.055*
H70.7576−0.27820.31540.058*
H80.9337−0.15760.24260.057*
H90.79670.11930.21660.052*
H120.180 (5)0.502 (3)0.1994 (7)0.043 (8)*
H13A0.50620.54610.12220.047*
H13B0.58830.72780.15880.047*
H14A0.04100.62740.12350.054*
H14B0.14010.81650.15580.054*
H16A0.01130.66790.03330.055*
H16B0.26190.55710.04950.055*
H17A0.30990.8593−0.01330.077*
H17B0.31200.6441−0.03250.077*
H17C0.55650.74270.00190.077*
H18A−0.08950.94090.08730.059*
H18B0.11261.01500.04580.059*
H19A0.18851.10640.14980.097*
H19B0.09611.24670.11070.097*
H19C0.39621.17760.10870.097*
H32A0.07080.35710.42980.057*
H32B−0.19430.24950.40240.057*
H33A−0.33490.46700.46370.059*
H33B−0.42050.52640.41010.059*
H34A−0.05020.75620.41260.063*
H34B0.04560.69400.46530.063*
H35A−0.46210.84850.45040.090*
H35B−0.19720.96780.47360.090*
H35C−0.34190.80260.50300.090*
U11U22U33U12U13U23
O110.0350 (13)0.0471 (12)0.0590 (11)0.0077 (10)0.0081 (9)0.0141 (9)
O310.0541 (13)0.0469 (12)0.0426 (10)0.0170 (10)0.0117 (9)0.0061 (8)
N40.0475 (16)0.0351 (13)0.0434 (13)0.0079 (12)0.0037 (10)0.0048 (10)
N120.0306 (15)0.0407 (14)0.0451 (13)0.0037 (12)0.0073 (11)0.0138 (10)
N150.0500 (16)0.0332 (13)0.0413 (12)0.0107 (11)0.0057 (10)0.0062 (10)
C10.0364 (18)0.0312 (15)0.0414 (14)0.0040 (13)0.0002 (12)0.0035 (12)
C20.0416 (19)0.0334 (16)0.0425 (15)0.0088 (14)0.0002 (13)0.0038 (12)
C30.0433 (18)0.0366 (16)0.0405 (15)0.0098 (14)0.0054 (12)−0.0001 (12)
C50.0443 (19)0.0334 (16)0.0402 (15)0.0069 (14)−0.0013 (13)0.0022 (12)
C60.058 (2)0.0334 (16)0.0485 (16)0.0103 (15)0.0027 (14)0.0082 (13)
C70.056 (2)0.0331 (16)0.0567 (18)0.0077 (15)−0.0021 (14)0.0067 (13)
C80.051 (2)0.0371 (17)0.0542 (17)0.0118 (15)0.0030 (14)−0.0003 (13)
C90.0460 (19)0.0375 (16)0.0471 (16)0.0110 (14)0.0042 (13)0.0054 (13)
C100.0361 (18)0.0312 (15)0.0439 (15)0.0059 (13)−0.0032 (12)0.0014 (12)
C110.0392 (19)0.0321 (16)0.0449 (15)0.0077 (14)0.0025 (13)0.0029 (12)
C130.0326 (17)0.0407 (16)0.0457 (15)0.0032 (13)0.0047 (12)0.0115 (13)
C140.0450 (19)0.0412 (16)0.0509 (16)0.0121 (14)0.0054 (13)0.0128 (13)
C160.051 (2)0.0357 (16)0.0503 (17)0.0066 (15)0.0008 (14)0.0038 (13)
C170.064 (2)0.0452 (18)0.0468 (16)0.0125 (16)0.0016 (14)0.0019 (13)
C180.058 (2)0.0378 (17)0.0535 (17)0.0161 (16)0.0037 (14)0.0078 (14)
C190.095 (3)0.0378 (18)0.0614 (19)0.0118 (18)0.0086 (17)−0.0013 (15)
C320.054 (2)0.0491 (18)0.0405 (15)0.0085 (16)0.0092 (13)0.0054 (13)
C330.050 (2)0.0524 (19)0.0454 (16)0.0082 (16)0.0104 (13)−0.0003 (14)
C340.052 (2)0.0502 (19)0.0555 (18)0.0071 (17)0.0013 (14)−0.0036 (15)
C350.061 (2)0.056 (2)0.0640 (18)0.0135 (17)0.0046 (15)−0.0045 (15)
O11—C111.236 (2)C13—H13B0.9900
O31—C31.348 (2)C14—H14A0.9900
O31—C321.444 (2)C14—H14B0.9900
N4—C31.304 (3)C16—C171.511 (3)
N4—C51.383 (3)C16—H16A0.9900
N12—C111.352 (3)C16—H16B0.9900
N12—C131.452 (3)C17—H17A0.9800
N12—H120.94 (2)C17—H17B0.9800
N15—C141.466 (3)C17—H17C0.9800
N15—C181.469 (2)C18—C191.513 (3)
N15—C161.469 (3)C18—H18A0.9900
C1—C21.354 (3)C18—H18B0.9900
C1—C101.444 (3)C19—H19A0.9800
C1—C111.494 (3)C19—H19B0.9800
C2—C31.414 (3)C19—H19C0.9800
C2—H20.9500C32—C331.508 (3)
C5—C61.408 (3)C32—H32A0.9900
C5—C101.417 (3)C32—H32B0.9900
C6—C71.365 (3)C33—C341.520 (3)
C6—H60.9500C33—H33A0.9900
C7—C81.404 (3)C33—H33B0.9900
C7—H70.9500C34—C351.523 (3)
C8—C91.368 (3)C34—H34A0.9900
C8—H80.9500C34—H34B0.9900
C9—C101.409 (3)C35—H35A0.9800
C9—H90.9500C35—H35B0.9800
C13—C141.520 (3)C35—H35C0.9800
C13—H13A0.9900
C3—O31—C32117.98 (18)H14A—C14—H14B108.10
C3—N4—C5116.6 (2)N15—C16—C17113.6 (2)
C11—N12—C13120.9 (2)N15—C16—H16A108.90
C11—N12—H12117.6 (13)C17—C16—H16A108.90
C13—N12—H12121.0 (13)N15—C16—H16B108.90
C14—N15—C18110.81 (18)C17—C16—H16B108.90
C14—N15—C16109.95 (18)H16A—C16—H16B107.70
C18—N15—C16110.41 (18)C16—C17—H17A109.50
C2—C1—C10118.5 (2)C16—C17—H17B109.50
C2—C1—C11119.8 (2)H17A—C17—H17B109.50
C10—C1—C11121.6 (2)C16—C17—H17C109.50
C1—C2—C3120.0 (2)H17A—C17—H17C109.50
C1—C2—H2120.00H17B—C17—H17C109.50
C3—C2—H2120.00N15—C18—C19112.7 (2)
N4—C3—O31121.0 (2)N15—C18—H18A109.10
N4—C3—C2124.6 (2)C19—C18—H18A109.10
O31—C3—C2114.4 (2)N15—C18—H18B109.10
N4—C5—C6117.2 (2)C19—C18—H18B109.10
N4—C5—C10123.7 (2)H18A—C18—H18B107.80
C6—C5—C10119.2 (2)C18—C19—H19A109.50
C7—C6—C5120.6 (2)C18—C19—H19B109.50
C7—C6—H6119.70H19A—C19—H19B109.50
C5—C6—H6119.70C18—C19—H19C109.50
C6—C7—C8120.3 (2)H19A—C19—H19C109.50
C6—C7—H7119.90H19B—C19—H19C109.50
C8—C7—H7119.90O31—C32—C33106.61 (19)
C9—C8—C7120.4 (2)O31—C32—H32A110.40
C9—C8—H8119.80C33—C32—H32A110.40
C7—C8—H8119.80O31—C32—H32B110.40
C8—C9—C10120.6 (2)C33—C32—H32B110.40
C8—C9—H9119.70H32A—C32—H32B108.60
C10—C9—H9119.70C32—C33—C34114.2 (2)
C9—C10—C5118.9 (2)C32—C33—H33A108.70
C9—C10—C1124.4 (2)C34—C33—H33A108.70
C5—C10—C1116.6 (2)C32—C33—H33B108.70
O11—C11—N12121.4 (2)C34—C33—H33B108.70
O11—C11—C1123.5 (2)H33A—C33—H33B107.60
N12—C11—C1115.1 (2)C33—C34—C35112.7 (2)
N12—C13—C14109.85 (19)C33—C34—H34A109.10
N12—C13—H13A109.70C35—C34—H34A109.10
C14—C13—H13A109.70C33—C34—H34B109.10
N12—C13—H13B109.70C35—C34—H34B109.10
C14—C13—H13B109.70H34A—C34—H34B107.80
H13A—C13—H13B108.20C34—C35—H35A109.50
N15—C14—C13110.76 (19)C34—C35—H35B109.50
N15—C14—H14A109.50H35A—C35—H35B109.50
C13—C14—H14A109.50C34—C35—H35C109.50
N15—C14—H14B109.50H35A—C35—H35C109.50
C13—C14—H14B109.50H35B—C35—H35C109.50
C10—C1—C2—C30.8 (4)C2—C1—C10—C9179.3 (2)
C11—C1—C2—C3−176.4 (2)C11—C1—C10—C9−3.5 (4)
C5—N4—C3—O31−179.5 (2)C2—C1—C10—C5−0.2 (3)
C5—N4—C3—C2−0.5 (4)C11—C1—C10—C5176.9 (2)
C32—O31—C3—N42.9 (4)C13—N12—C11—O11−0.8 (4)
C32—O31—C3—C2−176.12 (19)C13—N12—C11—C1177.23 (19)
C1—C2—C3—N4−0.5 (4)C2—C1—C11—O11137.5 (3)
C1—C2—C3—O31178.5 (2)C10—C1—C11—O11−39.6 (4)
C3—N4—C5—C6−179.0 (2)C2—C1—C11—N12−40.5 (3)
C3—N4—C5—C101.2 (4)C10—C1—C11—N12142.4 (2)
N4—C5—C6—C7−179.2 (2)C11—N12—C13—C14−175.3 (2)
C10—C5—C6—C70.6 (4)C18—N15—C14—C13−149.9 (2)
C5—C6—C7—C8−0.4 (4)C16—N15—C14—C1387.7 (2)
C6—C7—C8—C9−0.3 (4)N12—C13—C14—N15−174.54 (18)
C7—C8—C9—C100.8 (4)C14—N15—C16—C17−159.16 (19)
C8—C9—C10—C5−0.5 (4)C18—N15—C16—C1778.3 (2)
C8—C9—C10—C1180.0 (2)C14—N15—C18—C1974.0 (3)
N4—C5—C10—C9179.6 (2)C16—N15—C18—C19−164.0 (2)
C6—C5—C10—C9−0.2 (4)C3—O31—C32—C33175.6 (2)
N4—C5—C10—C1−0.8 (4)O31—C32—C33—C34−61.5 (3)
C6—C5—C10—C1179.4 (2)C32—C33—C34—C35−177.9 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9···O110.952.433.015 (3)119
N12—H12···O11i0.93 (2)1.93 (2)2.857 (3)170.9 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O110.952.433.015 (3)119
N12—H12⋯O11i0.93 (2)1.93 (2)2.857 (3)171 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Comparison of the vasoactivity of amide and ester local anaesthetics. An intradermal study.

Authors:  D G Willatts; F Reynolds
Journal:  Br J Anaesth       Date:  1985-10       Impact factor: 9.166

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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