| Literature DB >> 21589482 |
Irena Matulková, Ivana Císařová, Ivan Němec.
Abstract
In the crystal of the title compound, C(8)H(12)N(5) (+)·C(4)H(5)O(4) (-)·CH(3)OH, the hydrogen succinate anions form infinite [010] chains via short, almost symmetrical, O⋯H⋯O hydrogen bonds. The 2-phenyl-biguanidium cations inter-connect these chains into layers lying parallel to the bc plane by way of N-H⋯O links. These planes only weakly inter-act in the direction of the a axis via C-H⋯π contacts between offset phenyl rings, leaving as much as 17% of the unit-cell volume accessible for the solvent. However, the methanol solvent mol-ecules could not be resolved due to extensive disorder and their assumed presence was removed from the overall scattering by the PLATON SQUEEZE procedure.Entities:
Year: 2010 PMID: 21589482 PMCID: PMC3011512 DOI: 10.1107/S160053681004585X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H12N5+·C4H5O4−·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3693 reflections |
| θ = 1–27.1° | |
| µ = 0.10 mm−1 | |
| β = 94.0480 (13)° | Plate, colourless |
| 0.45 × 0.4 × 0.18 mm | |
| Nonius KappaCCD diffractometer | 2613 reflections with |
| Radiation source: fine-focus sealed tube | |
| horizontally mounted graphite crystal | θmax = 27.1°, θmin = 1.7° |
| Detector resolution: 9.091 pixels mm-1 | |
| ω and π scans to fill the Ewald sphere | |
| 18123 measured reflections | |
| 3568 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3568 reflections | Δρmax = 0.25 e Å−3 |
| 191 parameters | Δρmin = −0.23 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.055 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.20697 (15) | −0.1226 (2) | 0.77926 (5) | 0.0515 (4) | |
| H1 | 0.1757 | −0.1468 | 0.7435 | 0.062* | |
| N2 | 0.07708 (16) | −0.3948 (2) | 0.79668 (5) | 0.0570 (4) | |
| H2A | 0.0599 | −0.4106 | 0.7620 | 0.068* | |
| H2B | 0.0280 | −0.4630 | 0.8208 | 0.068* | |
| N3 | 0.18707 (15) | −0.2116 (2) | 0.86872 (5) | 0.0514 (4) | |
| N4 | 0.16449 (16) | −0.2862 (2) | 0.95713 (5) | 0.0537 (4) | |
| H4A | 0.1524 | −0.1453 | 0.9625 | 0.064* | |
| H4B | 0.1638 | −0.3785 | 0.9874 | 0.064* | |
| N5 | 0.18754 (16) | −0.5585 (2) | 0.90047 (5) | 0.0575 (4) | |
| H5A | 0.2005 | −0.6075 | 0.8702 | 0.069* | |
| H5B | 0.1909 | −0.6467 | 0.9288 | 0.069* | |
| C1 | 0.15804 (17) | −0.2481 (2) | 0.81647 (6) | 0.0464 (4) | |
| C2 | 0.17836 (16) | −0.3547 (2) | 0.90737 (6) | 0.0448 (4) | |
| O1 | −0.16551 (14) | −0.15632 (17) | 1.00242 (4) | 0.0577 (4) | |
| O2 | −0.16362 (15) | −0.43722 (16) | 0.95237 (5) | 0.0616 (4) | |
| H2 | −0.1523 | −0.4961 | 0.9068 | 0.074* | |
| O3 | −0.10001 (17) | 0.1366 (2) | 0.81889 (5) | 0.0738 (5) | |
| O4 | −0.13315 (14) | 0.42420 (17) | 0.86173 (4) | 0.0598 (4) | |
| C3 | 0.29311 (18) | 0.0463 (2) | 0.78891 (6) | 0.0519 (4) | |
| C4 | 0.3920 (2) | 0.0464 (3) | 0.82884 (8) | 0.0687 (6) | |
| H4 | 0.4044 | −0.0663 | 0.8521 | 0.082* | |
| C5 | 0.4738 (3) | 0.2177 (5) | 0.83414 (11) | 0.0929 (9) | |
| H5 | 0.5407 | 0.2191 | 0.8614 | 0.112* | |
| C6 | 0.4578 (3) | 0.3832 (4) | 0.80008 (14) | 0.0964 (10) | |
| H6 | 0.5130 | 0.4967 | 0.8042 | 0.116* | |
| C7 | 0.3612 (3) | 0.3805 (4) | 0.76041 (14) | 0.0911 (9) | |
| H7 | 0.3508 | 0.4928 | 0.7369 | 0.109* | |
| C8 | 0.2768 (2) | 0.2135 (3) | 0.75394 (9) | 0.0694 (6) | |
| H8 | 0.2103 | 0.2139 | 0.7265 | 0.083* | |
| C9 | −0.16134 (17) | −0.2385 (2) | 0.95785 (6) | 0.0464 (4) | |
| C10 | −0.15527 (19) | −0.1185 (2) | 0.90552 (6) | 0.0488 (4) | |
| H10A | −0.0830 | −0.1701 | 0.8864 | 0.059* | |
| H10B | −0.2341 | −0.1447 | 0.8828 | 0.059* | |
| C11 | −0.13977 (19) | 0.1122 (2) | 0.91303 (6) | 0.0462 (4) | |
| H11A | −0.2155 | 0.1663 | 0.9293 | 0.055* | |
| H11B | −0.0647 | 0.1387 | 0.9379 | 0.055* | |
| C12 | −0.12325 (17) | 0.2254 (2) | 0.86057 (6) | 0.0462 (4) |
| N1 | 0.0785 (10) | 0.0498 (8) | 0.0273 (6) | −0.0067 (6) | 0.0109 (6) | 0.0028 (5) |
| N2 | 0.0825 (11) | 0.0601 (9) | 0.0291 (7) | −0.0165 (7) | 0.0088 (6) | −0.0007 (6) |
| N3 | 0.0828 (10) | 0.0438 (7) | 0.0288 (7) | −0.0077 (7) | 0.0109 (6) | 0.0018 (5) |
| N4 | 0.0905 (11) | 0.0458 (8) | 0.0258 (6) | −0.0013 (7) | 0.0104 (6) | 0.0035 (5) |
| N5 | 0.0926 (12) | 0.0439 (8) | 0.0368 (7) | 0.0057 (7) | 0.0099 (7) | 0.0031 (6) |
| C1 | 0.0672 (10) | 0.0430 (8) | 0.0302 (7) | 0.0002 (7) | 0.0121 (7) | 0.0014 (6) |
| C2 | 0.0593 (10) | 0.0457 (8) | 0.0300 (7) | −0.0025 (7) | 0.0065 (6) | 0.0021 (6) |
| O1 | 0.1019 (10) | 0.0397 (6) | 0.0324 (6) | −0.0008 (6) | 0.0104 (6) | 0.0029 (4) |
| O2 | 0.1145 (11) | 0.0315 (6) | 0.0402 (6) | −0.0014 (6) | 0.0168 (6) | 0.0058 (4) |
| O3 | 0.1439 (14) | 0.0514 (7) | 0.0279 (6) | −0.0011 (7) | 0.0179 (7) | 0.0000 (5) |
| O4 | 0.1054 (10) | 0.0345 (6) | 0.0410 (6) | −0.0023 (6) | 0.0155 (6) | 0.0084 (4) |
| C3 | 0.0733 (11) | 0.0461 (9) | 0.0391 (8) | −0.0031 (8) | 0.0240 (8) | −0.0013 (6) |
| C4 | 0.0815 (14) | 0.0792 (14) | 0.0468 (10) | −0.0154 (10) | 0.0140 (10) | 0.0015 (9) |
| C5 | 0.0854 (16) | 0.119 (2) | 0.0775 (16) | −0.0400 (15) | 0.0293 (13) | −0.0254 (15) |
| C6 | 0.105 (2) | 0.0770 (16) | 0.114 (2) | −0.0389 (14) | 0.0597 (19) | −0.0213 (15) |
| C7 | 0.110 (2) | 0.0545 (12) | 0.116 (2) | −0.0070 (12) | 0.0548 (19) | 0.0143 (13) |
| C8 | 0.0849 (14) | 0.0561 (11) | 0.0711 (13) | 0.0021 (9) | 0.0319 (11) | 0.0170 (9) |
| C9 | 0.0715 (11) | 0.0329 (7) | 0.0357 (8) | 0.0001 (7) | 0.0097 (7) | 0.0041 (6) |
| C10 | 0.0817 (12) | 0.0329 (8) | 0.0325 (7) | −0.0001 (7) | 0.0086 (7) | 0.0027 (5) |
| C11 | 0.0779 (11) | 0.0335 (7) | 0.0281 (7) | −0.0031 (7) | 0.0087 (7) | 0.0026 (5) |
| C12 | 0.0741 (11) | 0.0366 (8) | 0.0281 (7) | −0.0040 (7) | 0.0050 (7) | 0.0029 (5) |
| N1—C1 | 1.3495 (19) | C3—C4 | 1.368 (3) |
| N1—C3 | 1.417 (2) | C3—C8 | 1.385 (2) |
| N1—H1 | 0.9313 | C4—C5 | 1.393 (3) |
| N2—C1 | 1.333 (2) | C4—H4 | 0.9300 |
| N2—H2A | 0.8679 | C5—C6 | 1.363 (4) |
| N2—H2B | 0.9206 | C5—H5 | 0.9300 |
| N3—C1 | 1.3242 (19) | C6—C7 | 1.348 (5) |
| N3—C2 | 1.3358 (19) | C6—H6 | 0.9300 |
| N4—C2 | 1.3223 (18) | C7—C8 | 1.389 (4) |
| N4—H4A | 0.9291 | C7—H7 | 0.9300 |
| N4—H4B | 0.9561 | C8—H8 | 0.9300 |
| N5—C2 | 1.331 (2) | C9—C10 | 1.511 (2) |
| N5—H5A | 0.8301 | C10—C11 | 1.509 (2) |
| N5—H5B | 0.9016 | C10—H10A | 0.9700 |
| O1—C9 | 1.2245 (18) | C10—H10B | 0.9700 |
| O2—C9 | 1.2909 (19) | C11—C12 | 1.5069 (19) |
| O2—H2 | 1.2016 | C11—H11A | 0.9700 |
| O3—C12 | 1.2164 (18) | C11—H11B | 0.9700 |
| O4—C12 | 1.2884 (19) | ||
| C1—N1—C3 | 127.49 (14) | C4—C5—H5 | 119.4 |
| C1—N1—H1 | 115.0 | C7—C6—C5 | 119.3 (2) |
| C3—N1—H1 | 117.4 | C7—C6—H6 | 120.3 |
| C1—N2—H2A | 121.6 | C5—C6—H6 | 120.3 |
| C1—N2—H2B | 117.6 | C6—C7—C8 | 121.3 (2) |
| H2A—N2—H2B | 119.8 | C6—C7—H7 | 119.4 |
| C1—N3—C2 | 123.36 (14) | C8—C7—H7 | 119.4 |
| C2—N4—H4A | 119.0 | C3—C8—C7 | 119.1 (2) |
| C2—N4—H4B | 121.6 | C3—C8—H8 | 120.4 |
| H4A—N4—H4B | 119.4 | C7—C8—H8 | 120.4 |
| C2—N5—H5A | 120.7 | O1—C9—O2 | 121.57 (13) |
| C2—N5—H5B | 121.7 | O1—C9—C10 | 123.48 (13) |
| H5A—N5—H5B | 117.2 | O2—C9—C10 | 114.95 (13) |
| N3—C1—N2 | 125.19 (14) | C11—C10—C9 | 114.32 (12) |
| N3—C1—N1 | 119.06 (15) | C11—C10—H10A | 108.7 |
| N2—C1—N1 | 115.64 (14) | C9—C10—H10A | 108.7 |
| N4—C2—N5 | 117.58 (14) | C11—C10—H10B | 108.7 |
| N4—C2—N3 | 116.65 (14) | C9—C10—H10B | 108.7 |
| N5—C2—N3 | 125.71 (13) | H10A—C10—H10B | 107.6 |
| C9—O2—H2 | 114.2 | C12—C11—C10 | 113.04 (12) |
| C4—C3—C8 | 119.99 (19) | C12—C11—H11A | 109.0 |
| C4—C3—N1 | 123.32 (16) | C10—C11—H11A | 109.0 |
| C8—C3—N1 | 116.63 (18) | C12—C11—H11B | 109.0 |
| C3—C4—C5 | 119.0 (2) | C10—C11—H11B | 109.0 |
| C3—C4—H4 | 120.5 | H11A—C11—H11B | 107.8 |
| C5—C4—H4 | 120.5 | O3—C12—O4 | 120.62 (13) |
| C6—C5—C4 | 121.2 (3) | O3—C12—C11 | 122.59 (14) |
| C6—C5—H5 | 119.4 | O4—C12—C11 | 116.78 (12) |
| Cg1 is the centroidof the C3–C8 ring. |
| H··· | ||||
| N1—H1···O3i | 0.93 | 2.18 | 3.021 (2) | 149 |
| N1—H1···O4i | 0.93 | 2.64 | 3.5217 (17) | 158 |
| N2—H2A···O3i | 0.87 | 2.09 | 2.8855 (17) | 152 |
| N2—H2B···O4ii | 0.92 | 2.14 | 3.0248 (19) | 162 |
| N4—H4A···O1iii | 0.93 | 2.13 | 3.0273 (18) | 161 |
| N4—H4B···O2iv | 0.96 | 1.90 | 2.8605 (16) | 180 |
| N5—H5B···O1iv | 0.90 | 2.15 | 3.0440 (17) | 170 |
| O2—H2···O4ii | 1.20 | 1.25 | 2.4500 (16) | 173 |
| C6—H6···Cg1v | 0.93 | 3.10 | 3.676 (2) | 122 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroidof the C3–C8 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O3i | 0.93 | 2.18 | 3.021 (2) | 149 |
| N1—H1⋯O4i | 0.93 | 2.64 | 3.5217 (17) | 158 |
| N2—H2 | 0.87 | 2.09 | 2.8855 (17) | 152 |
| N2—H2 | 0.92 | 2.14 | 3.0248 (19) | 162 |
| N4—H4 | 0.93 | 2.13 | 3.0273 (18) | 161 |
| N4—H4 | 0.96 | 1.90 | 2.8605 (16) | 180 |
| N5—H5 | 0.90 | 2.15 | 3.0440 (17) | 170 |
| O2—H2⋯O4ii | 1.20 | 1.25 | 2.4500 (16) | 173 |
| C6—H6⋯ | 0.93 | 3.10 | 3.676 (2) | 122 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; .