Literature DB >> 21589475

2-(3-Morpholino-prop-yl)-2,3-dihydro-1H-pyrrolo-[3,4-b]quinolin-1-one monohydrate.

Yu-Hua Long1, Ting Zhou, Ding-Qiao Yang, Wen-Ling Wang, Han-Mei Zhang.   

Abstract

In the title compound, C(18)H(21)N(3)O(2)·H(2)O, the fused-ring system is approximately planar [maximum atomic deviation = 0.028 (3) Å]; the morpholine ring displays a chair conformation. The crystal packing is stabilized by classical inter-molecular O-H⋯O and O-H⋯N hydrogen bonds and weak C-H⋯O hydrogen bonds between the organic mol-ecules and the water mol-ecules.

Entities:  

Year:  2010        PMID: 21589475      PMCID: PMC3011724          DOI: 10.1107/S1600536810046349

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties and biological activity of quinoline deriv­atives, see: Vaitilingam et al. (2004 ▶); Lee et al. (2004 ▶); Zwaagstra et al. (1998 ▶); Roma et al. (2000 ▶); Ferrarini et al. (2000 ▶). For the preparation of quinoline derivatives, see: Zhou et al. (2010 ▶); Yang et al. (2008 ▶).

Experimental

Crystal data

C18H21N3O2·H2O M = 329.39 Orthorhombic, a = 7.0107 (16) Å b = 12.655 (3) Å c = 37.609 (9) Å V = 3336.7 (13) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.30 × 0.28 × 0.27 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 15458 measured reflections 2943 independent reflections 1864 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.144 S = 1.04 2943 reflections 225 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810046349/xu5085sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046349/xu5085Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21N3O2·H2OF(000) = 1408.0
Mr = 329.39Dx = 1.311 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1868 reflections
a = 7.0107 (16) Åθ = 3.1–20.4°
b = 12.655 (3) ŵ = 0.09 mm1
c = 37.609 (9) ÅT = 296 K
V = 3336.7 (13) Å3Block, colorless
Z = 80.30 × 0.28 × 0.27 mm
Bruker SMART 1000 CCD area-detector diffractometer1864 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.067
graphiteθmax = 25.0°, θmin = 2.2°
φ and ω scansh = −8→7
15458 measured reflectionsk = −15→14
2943 independent reflectionsl = −44→41
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0611P)2 + 1.0475P] where P = (Fo2 + 2Fc2)/3
2943 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.28 e Å3
3 restraintsΔρmin = −0.41 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1806 (3)0.84470 (14)0.25789 (5)0.0447 (5)
O10.1534 (3)1.07919 (12)0.35666 (4)0.0547 (5)
N20.1728 (3)0.89892 (13)0.35114 (5)0.0406 (5)
N3−0.1048 (3)0.66704 (14)0.44146 (5)0.0431 (5)
O2−0.2365 (3)0.47670 (15)0.47362 (5)0.0807 (7)
C60.1586 (3)1.02874 (17)0.23807 (6)0.0401 (6)
C50.1701 (3)0.91850 (17)0.23121 (6)0.0402 (6)
C40.1701 (4)0.8838 (2)0.19565 (6)0.0509 (7)
H40.17440.81190.19070.061*
C10.1522 (4)1.09912 (19)0.20898 (7)0.0519 (7)
H10.14461.17140.21320.062*
C30.1638 (4)0.9544 (2)0.16832 (7)0.0561 (7)
H30.16420.93010.14500.067*
C20.1569 (4)1.0629 (2)0.17496 (7)0.0582 (7)
H20.15541.11040.15610.070*
C90.1791 (3)0.88333 (16)0.29006 (6)0.0386 (6)
C80.1644 (3)0.99006 (16)0.29942 (5)0.0371 (6)
C100.1624 (3)0.99828 (17)0.33838 (6)0.0399 (6)
C70.1545 (3)1.06426 (17)0.27334 (6)0.0416 (6)
H70.14541.13580.27870.050*
C110.1741 (4)0.87224 (18)0.38875 (6)0.0445 (6)
H11A0.13050.93250.40250.053*
H11B0.30340.85600.39610.053*
C130.0266 (4)0.75468 (17)0.43519 (6)0.0443 (6)
H13A0.15070.73700.44500.053*
H13B−0.01970.81710.44740.053*
C120.0472 (4)0.77880 (18)0.39619 (6)0.0454 (6)
H12A0.09900.71720.38430.054*
H12B−0.07810.79240.38630.054*
C15−0.1663 (5)0.4788 (2)0.43826 (7)0.0720 (9)
H15A−0.27170.49000.42200.086*
H15B−0.10900.41110.43270.086*
C17−0.1709 (5)0.6639 (2)0.47821 (7)0.0656 (9)
H17A−0.22900.73100.48440.079*
H17B−0.06360.65210.49400.079*
C14−0.0214 (4)0.56444 (18)0.43321 (7)0.0547 (7)
H14A0.08710.55170.44860.066*
H14B0.02340.56410.40880.066*
C16−0.3143 (5)0.5764 (2)0.48256 (9)0.0875 (12)
H16A−0.35810.57480.50700.105*
H16B−0.42370.59050.46750.105*
C180.1877 (4)0.81867 (18)0.32341 (6)0.0467 (6)
H18A0.08260.76900.32460.056*
H18B0.30720.78030.32510.056*
O1W0.5672 (4)0.72672 (19)0.39612 (10)0.1179 (11)
H1W0.638 (6)0.695 (3)0.4116 (10)0.17 (2)*
H2W0.506 (6)0.678 (3)0.3845 (11)0.20 (2)*
U11U22U33U12U13U23
N10.0601 (15)0.0386 (10)0.0354 (11)0.0044 (10)−0.0005 (9)0.0000 (8)
O10.0741 (14)0.0385 (9)0.0515 (10)−0.0030 (8)0.0045 (9)−0.0100 (8)
N20.0512 (13)0.0360 (10)0.0346 (10)−0.0028 (9)0.0013 (9)−0.0007 (8)
N30.0506 (13)0.0402 (11)0.0384 (11)−0.0036 (9)0.0092 (9)−0.0022 (8)
O20.120 (2)0.0528 (12)0.0695 (13)−0.0217 (12)0.0372 (13)−0.0008 (9)
C60.0372 (15)0.0409 (13)0.0424 (13)−0.0019 (11)−0.0023 (11)0.0071 (10)
C50.0361 (14)0.0451 (14)0.0393 (13)0.0026 (11)−0.0004 (11)0.0037 (10)
C40.0583 (18)0.0533 (15)0.0410 (14)0.0107 (13)−0.0017 (12)0.0002 (12)
C10.0547 (18)0.0467 (14)0.0543 (16)−0.0010 (12)−0.0034 (13)0.0114 (12)
C30.0527 (18)0.0750 (19)0.0406 (14)0.0123 (14)−0.0010 (12)0.0058 (13)
C20.0565 (19)0.0665 (18)0.0517 (17)0.0026 (14)−0.0005 (14)0.0192 (13)
C90.0429 (15)0.0352 (12)0.0378 (13)0.0001 (10)0.0004 (11)0.0005 (10)
C80.0382 (14)0.0332 (12)0.0400 (13)−0.0036 (10)0.0025 (11)−0.0001 (9)
C100.0389 (14)0.0363 (13)0.0444 (14)−0.0037 (10)0.0019 (11)−0.0029 (10)
C70.0445 (16)0.0338 (12)0.0465 (14)−0.0035 (11)−0.0017 (12)−0.0003 (10)
C110.0495 (16)0.0495 (14)0.0346 (13)−0.0068 (12)−0.0018 (11)0.0005 (10)
C130.0513 (16)0.0429 (13)0.0387 (13)−0.0055 (12)−0.0027 (11)0.0000 (10)
C120.0519 (17)0.0450 (14)0.0393 (13)−0.0069 (12)−0.0013 (11)0.0015 (10)
C150.096 (3)0.0501 (16)0.070 (2)−0.0123 (16)0.0266 (18)−0.0086 (14)
C170.091 (2)0.0552 (16)0.0503 (16)−0.0108 (16)0.0242 (15)−0.0076 (12)
C140.068 (2)0.0441 (14)0.0522 (15)0.0011 (13)0.0158 (14)0.0000 (11)
C160.114 (3)0.062 (2)0.086 (2)−0.0226 (19)0.054 (2)−0.0117 (16)
C180.0626 (18)0.0372 (13)0.0402 (13)−0.0027 (12)0.0009 (12)−0.0006 (10)
O1W0.091 (2)0.0689 (15)0.194 (3)0.0150 (14)−0.066 (2)−0.0318 (18)
N1—C91.305 (3)C8—C101.469 (3)
N1—C51.373 (3)C7—H70.9300
O1—C101.235 (3)C11—C121.506 (3)
N2—C101.348 (3)C11—H11A0.9700
N2—C111.454 (3)C11—H11B0.9700
N2—C181.460 (3)C13—C121.505 (3)
N3—C141.458 (3)C13—H13A0.9700
N3—C171.458 (3)C13—H13B0.9700
N3—C131.461 (3)C12—H12A0.9700
O2—C151.418 (3)C12—H12B0.9700
O2—C161.415 (4)C15—C141.498 (4)
C6—C71.401 (3)C15—H15A0.9700
C6—C11.411 (3)C15—H15B0.9700
C6—C51.421 (3)C17—C161.505 (4)
C5—C41.408 (3)C17—H17A0.9700
C4—C31.362 (3)C17—H17B0.9700
C4—H40.9300C14—H14A0.9700
C1—C21.360 (3)C14—H14B0.9700
C1—H10.9300C16—H16A0.9700
C3—C21.397 (4)C16—H16B0.9700
C3—H30.9300C18—H18A0.9700
C2—H20.9300C18—H18B0.9700
C9—C81.400 (3)O1W—H1W0.86 (4)
C9—C181.499 (3)O1W—H2W0.87 (4)
C8—C71.360 (3)
C9—N1—C5114.99 (18)N3—C13—C12111.82 (18)
C10—N2—C11124.29 (19)N3—C13—H13A109.3
C10—N2—C18113.48 (18)C12—C13—H13A109.3
C11—N2—C18122.21 (17)N3—C13—H13B109.3
C14—N3—C17107.80 (19)C12—C13—H13B109.3
C14—N3—C13112.86 (19)H13A—C13—H13B107.9
C17—N3—C13111.95 (18)C11—C12—C13113.39 (19)
C15—O2—C16109.9 (2)C11—C12—H12A108.9
C7—C6—C1122.1 (2)C13—C12—H12A108.9
C7—C6—C5119.21 (19)C11—C12—H12B108.9
C1—C6—C5118.7 (2)C13—C12—H12B108.9
N1—C5—C4118.8 (2)H12A—C12—H12B107.7
N1—C5—C6122.6 (2)O2—C15—C14111.6 (2)
C4—C5—C6118.6 (2)O2—C15—H15A109.3
C3—C4—C5120.8 (2)C14—C15—H15A109.3
C3—C4—H4119.6O2—C15—H15B109.3
C5—C4—H4119.6C14—C15—H15B109.3
C2—C1—C6121.1 (2)H15A—C15—H15B108.0
C2—C1—H1119.5N3—C17—C16109.6 (2)
C6—C1—H1119.5N3—C17—H17A109.8
C4—C3—C2120.7 (2)C16—C17—H17A109.8
C4—C3—H3119.6N3—C17—H17B109.8
C2—C3—H3119.6C16—C17—H17B109.8
C1—C2—C3120.0 (2)H17A—C17—H17B108.2
C1—C2—H2120.0N3—C14—C15110.2 (2)
C3—C2—H2120.0N3—C14—H14A109.6
N1—C9—C8126.5 (2)C15—C14—H14A109.6
N1—C9—C18124.83 (19)N3—C14—H14B109.6
C8—C9—C18108.63 (18)C15—C14—H14B109.6
C7—C8—C9119.3 (2)H14A—C14—H14B108.1
C7—C8—C10132.08 (19)O2—C16—C17111.9 (3)
C9—C8—C10108.65 (18)O2—C16—H16A109.2
O1—C10—N2125.3 (2)C17—C16—H16A109.2
O1—C10—C8127.9 (2)O2—C16—H16B109.2
N2—C10—C8106.78 (18)C17—C16—H16B109.2
C8—C7—C6117.4 (2)H16A—C16—H16B107.9
C8—C7—H7121.3N2—C18—C9102.43 (17)
C6—C7—H7121.3N2—C18—H18A111.3
N2—C11—C12111.07 (18)C9—C18—H18A111.3
N2—C11—H11A109.4N2—C18—H18B111.3
C12—C11—H11A109.4C9—C18—H18B111.3
N2—C11—H11B109.4H18A—C18—H18B109.2
C12—C11—H11B109.4H1W—O1W—H2W107 (4)
H11A—C11—H11B108.0
C9—N1—C5—C4−179.8 (2)C7—C8—C10—N2179.0 (3)
C9—N1—C5—C60.1 (3)C9—C8—C10—N2−0.9 (3)
C7—C6—C5—N1−1.1 (4)C9—C8—C7—C60.4 (3)
C1—C6—C5—N1178.7 (2)C10—C8—C7—C6−179.5 (2)
C7—C6—C5—C4178.7 (2)C1—C6—C7—C8−179.0 (2)
C1—C6—C5—C4−1.4 (3)C5—C6—C7—C80.8 (3)
N1—C5—C4—C3−178.7 (2)C10—N2—C11—C12137.0 (2)
C6—C5—C4—C31.5 (4)C18—N2—C11—C12−44.5 (3)
C7—C6—C1—C2179.8 (2)C14—N3—C13—C1275.8 (3)
C5—C6—C1—C20.0 (4)C17—N3—C13—C12−162.4 (2)
C5—C4—C3—C2−0.1 (4)N2—C11—C12—C13−173.9 (2)
C6—C1—C2—C31.5 (4)N3—C13—C12—C11177.1 (2)
C4—C3—C2—C1−1.4 (4)C16—O2—C15—C1456.8 (4)
C5—N1—C9—C81.3 (4)C14—N3—C17—C16−58.6 (3)
C5—N1—C9—C18179.5 (2)C13—N3—C17—C16176.7 (2)
N1—C9—C8—C7−1.6 (4)C17—N3—C14—C1559.0 (3)
C18—C9—C8—C7180.0 (2)C13—N3—C14—C15−176.9 (2)
N1—C9—C8—C10178.3 (2)O2—C15—C14—N3−59.0 (3)
C18—C9—C8—C10−0.2 (3)C15—O2—C16—C17−57.1 (4)
C11—N2—C10—O10.3 (4)N3—C17—C16—O259.1 (4)
C18—N2—C10—O1−178.3 (2)C10—N2—C18—C9−1.7 (3)
C11—N2—C10—C8−179.8 (2)C11—N2—C18—C9179.7 (2)
C18—N2—C10—C81.6 (3)N1—C9—C18—N2−177.5 (2)
C7—C8—C10—O1−1.1 (5)C8—C9—C18—N21.0 (3)
C9—C8—C10—O1179.0 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···N3i0.86 (4)2.15 (4)2.961 (4)155 (4)
O1W—H2W···O1ii0.87 (4)1.98 (4)2.843 (3)174 (4)
C11—H11B···O1W0.972.473.326 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯N3i0.86 (4)2.15 (4)2.961 (4)155 (4)
O1W—H2W⋯O1ii0.87 (4)1.98 (4)2.843 (3)174 (4)
C11—H11B⋯O1W0.972.473.326 (4)147

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and structure-activity relationships of carboxyflavones as structurally rigid CysLT1 (LTD4) receptor antagonists.

Authors:  M E Zwaagstra; H Timmerman; A C van de Stolpe; F J de Kanter; M Tamura; Y Wada; M Q Zhang
Journal:  J Med Chem       Date:  1998-04-23       Impact factor: 7.446

3.  1,8-Naphthyridines IV. 9-substituted N,N-dialkyl-5-(alkylamino or cycloalkylamino) [1,2,4]triazolo[4,3-a][1, 8]naphthyridine-6-carboxamides, new compounds with anti-aggressive and potent anti-inflammatory activities.

Authors:  G Roma; M Di Braccio; G Grossi; F Mattioli; M Ghia
Journal:  Eur J Med Chem       Date:  2000-11       Impact factor: 6.514

4.  Synthesis and beta-blocking activity of (R,S)-(E)-oximeethers of 2, 3-dihydro-1,8-naphthyridine and 2,3-dihydrothiopyrano[2, 3-b]pyridine:potential antihypertensive agents - part IX.

Authors:  P L Ferrarini; C Mori; M Badawneh; V Calderone; R Greco; C Manera; A Martinelli; P Nieri; G Saccomanni
Journal:  Eur J Med Chem       Date:  2000-09       Impact factor: 6.514

5.  Synthesis and antimycobacterial activities of ring-substituted quinolinecarboxylic acid/ester analogues. Part 1.

Authors:  Balasubramanian Vaitilingam; Amit Nayyar; Prakash B Palde; Vikramdeep Monga; Rahul Jain; Sukhraj Kaur; Prati Pal Singh
Journal:  Bioorg Med Chem       Date:  2004-08-01       Impact factor: 3.641

6.  Synthesis and evaluation of dihydropyrroloquinolines that selectively antagonize P-glycoprotein.

Authors:  Brian D Lee; Zhanjiang Li; Kevin J French; Yan Zhuang; Zuping Xia; Charles D Smith
Journal:  J Med Chem       Date:  2004-03-11       Impact factor: 7.446

7.  Ethyl 5,8-dibromo-2-dibromo-methyl-6,7-dimeth-oxyquinoline-3-carb-oxy-late.

Authors:  Ting Zhou; Yu-Hua Long; Ding-Qiao Yang; Han-Mei Zhang; Wen-Ling Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  7 in total

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