Literature DB >> 21589449

4-[3-(1H-Imidazol-1-yl)prop-yl]-3-methyl-5-(thio-phen-2-ylmeth-yl)-4H-1,2,4-triazole monohydrate.

Anuradha Gurumoorthy, Vasuki Gopalsamy, Dilek Unlüer, Gülcan Kör, K Ramamurthi.   

Abstract

In the title compound, C(14)H(17)N(5)S·H(2)O, the triazole ring makes dihedral angles of 48.15 (8) and 84.92 (8)° with the imidazole and thio-phenyl rings, respectively. The water mol-ecule is involved in inter-molecular O-H⋯N hydrogen bonding.

Entities:  

Year:  2010        PMID: 21589449      PMCID: PMC3011757          DOI: 10.1107/S160053681004571X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Ünver et al. (2009 ▶). For related structures, see: Fun et al. (2010 ▶); Kalkan et al. (2007 ▶); Ustabaş et al. (2007 ▶, 2009 ▶); Ünver et al. (2006 ▶). For the biological activity of triazoles, see: Ustabaş, et al. (2006a ▶,b ▶); Yılmaz et al. (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H17N5S·H2O M = 305.40 Monoclinic, a = 9.5584 (12) Å b = 9.4873 (10) Å c = 17.644 (3) Å β = 99.360 (12)° V = 1578.7 (4) Å3 Z = 4 Cu Kα radiation μ = 1.88 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.603, T max = 0.705 2855 measured reflections 2679 independent reflections 2336 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.137 S = 1.12 2679 reflections 200 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and ZORTEP (Zsolnai, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004571X/jh2226sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004571X/jh2226Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H17N5S·H2OF(000) = 648
Mr = 305.40Dx = 1.285 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
a = 9.5584 (12) ÅCell parameters from 25 reflections
b = 9.4873 (10) Åθ = 20–30°
c = 17.644 (3) ŵ = 1.88 mm1
β = 99.360 (12)°T = 293 K
V = 1578.7 (4) Å3Block, colourless
Z = 40.30 × 0.25 × 0.20 mm
Enraf–Nonius CAD-4 diffractometer2679 independent reflections
Radiation source: fine-focus sealed tube2336 reflections with I > 2σ(I)
graphiteRint = 0.016
Detector resolution: 2 pixels mm-1θmax = 64.9°, θmin = 4.7°
ω–2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = 0→11
Tmin = 0.603, Tmax = 0.705l = −20→20
2855 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.137w = 1/[σ2(Fo2) + (0.0774P)2 + 0.5509P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max = 0.001
2679 reflectionsΔρmax = 0.31 e Å3
200 parametersΔρmin = −0.34 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.042 (2)
Experimental. North A.C.T., Phillips D.C. & Mathews F.S. (1968) Acta. Cryst. A24, 351 Number of psi-scan sets used was 5 Theta correction was applied. Averaged transmission function was used. No Fourier smoothing was applied.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.37723 (6)0.43126 (6)0.61955 (4)0.0582 (3)
N30.39660 (16)0.21826 (17)0.81129 (9)0.0356 (4)
N10.61089 (18)0.2561 (2)0.78623 (10)0.0442 (5)
N40.01247 (18)−0.0268 (2)0.74184 (11)0.0456 (5)
N20.60666 (18)0.29618 (19)0.86153 (10)0.0437 (5)
C40.3386 (2)0.2567 (2)0.62899 (11)0.0410 (5)
C70.4785 (2)0.2729 (2)0.87518 (11)0.0393 (5)
N5−0.1397 (2)0.0259 (3)0.63795 (14)0.0662 (6)
C90.2487 (2)0.1719 (2)0.80399 (12)0.0410 (5)
H9A0.20410.17970.75070.049*
H9B0.19830.23360.83420.049*
C50.4407 (2)0.1592 (2)0.67757 (12)0.0465 (5)
H5A0.39680.06720.67890.056*
H5B0.52460.14820.65370.056*
C30.2087 (2)0.2246 (3)0.58660 (12)0.0494 (6)
H30.16780.13550.58440.059*
C120.0596 (2)−0.0922 (3)0.68159 (14)0.0501 (6)
H120.1401−0.14800.68360.060*
C80.4268 (3)0.3028 (3)0.94823 (13)0.0592 (7)
H8A0.50390.33650.98550.089*
H8B0.38920.21800.96680.089*
H8C0.35380.37310.93970.089*
C100.2361 (2)0.0211 (2)0.83060 (12)0.0446 (5)
H10A0.27920.01380.88420.053*
H10B0.2880−0.04030.80110.053*
C60.4841 (2)0.2100 (2)0.75747 (11)0.0372 (5)
C20.1441 (2)0.3447 (3)0.54633 (14)0.0570 (6)
H20.05640.34200.51450.068*
C10.2227 (3)0.4610 (3)0.55909 (15)0.0586 (6)
H10.19600.54830.53740.070*
C13−0.0351 (3)−0.0591 (3)0.61877 (15)0.0588 (7)
H13−0.0299−0.08970.56920.071*
C110.0822 (2)−0.0285 (3)0.82172 (13)0.0548 (6)
H11A0.0798−0.12360.84170.066*
H11B0.03050.03200.85180.066*
C14−0.1074 (2)0.0419 (3)0.71219 (17)0.0590 (7)
H14−0.16110.09480.74130.071*
O1W0.8146 (3)0.2886 (3)1.00449 (18)0.1142 (11)
H1W0.758 (3)0.312 (4)0.9581 (11)0.111 (13)*
H2W0.801 (5)0.341 (5)1.0473 (14)0.16 (2)*
U11U22U33U12U13U23
S10.0574 (4)0.0422 (4)0.0688 (5)−0.0088 (2)−0.0084 (3)−0.0012 (3)
N30.0323 (8)0.0379 (9)0.0360 (8)0.0000 (7)0.0033 (6)0.0008 (7)
N10.0393 (9)0.0478 (11)0.0460 (10)−0.0052 (8)0.0085 (7)0.0062 (8)
N40.0333 (9)0.0503 (11)0.0529 (11)−0.0075 (8)0.0058 (7)0.0015 (8)
N20.0399 (9)0.0454 (10)0.0439 (9)−0.0064 (8)0.0011 (7)0.0028 (8)
C40.0495 (11)0.0409 (11)0.0327 (10)−0.0069 (9)0.0067 (8)−0.0032 (8)
C70.0404 (10)0.0398 (11)0.0361 (10)−0.0002 (8)0.0017 (8)0.0022 (8)
N50.0560 (13)0.0636 (14)0.0717 (14)−0.0045 (11)−0.0115 (11)0.0065 (11)
C90.0293 (10)0.0478 (12)0.0450 (11)0.0017 (8)0.0031 (8)0.0009 (9)
C50.0562 (13)0.0422 (12)0.0415 (11)0.0023 (10)0.0093 (10)−0.0024 (9)
C30.0529 (13)0.0553 (14)0.0406 (11)−0.0170 (10)0.0090 (9)−0.0014 (10)
C120.0404 (11)0.0507 (13)0.0604 (14)−0.0112 (10)0.0117 (10)−0.0003 (11)
C80.0567 (14)0.0789 (18)0.0412 (12)−0.0017 (13)0.0053 (10)−0.0093 (11)
C100.0368 (11)0.0516 (13)0.0440 (11)−0.0037 (9)0.0025 (8)0.0046 (9)
C60.0394 (10)0.0334 (10)0.0393 (10)0.0016 (8)0.0081 (8)0.0050 (8)
C20.0408 (12)0.0800 (18)0.0484 (13)−0.0049 (11)0.0021 (10)−0.0044 (12)
C10.0578 (14)0.0577 (15)0.0579 (14)0.0098 (12)0.0017 (11)0.0059 (11)
C130.0603 (15)0.0606 (15)0.0547 (14)−0.0212 (12)0.0066 (11)−0.0003 (11)
C110.0428 (12)0.0710 (16)0.0514 (13)−0.0128 (11)0.0103 (10)0.0055 (11)
C140.0404 (12)0.0542 (15)0.0798 (18)−0.0017 (10)0.0017 (11)−0.0041 (12)
O1W0.1007 (18)0.106 (2)0.113 (2)0.0367 (15)−0.0494 (16)−0.0440 (17)
S1—C11.699 (3)C5—H5B0.9700
S1—C41.711 (2)C3—C21.429 (4)
N3—C71.365 (3)C3—H30.9300
N3—C61.366 (3)C12—C131.349 (4)
N3—C91.466 (2)C12—H120.9300
N1—C61.311 (3)C8—H8A0.9600
N1—N21.389 (3)C8—H8B0.9600
N4—C141.348 (3)C8—H8C0.9600
N4—C121.369 (3)C10—C111.528 (3)
N4—C111.458 (3)C10—H10A0.9700
N2—C71.306 (3)C10—H10B0.9700
C4—C31.376 (3)C2—C11.333 (4)
C4—C51.507 (3)C2—H20.9300
C7—C81.481 (3)C1—H10.9300
N5—C141.305 (4)C13—H130.9300
N5—C131.369 (4)C11—H11A0.9700
C9—C101.516 (3)C11—H11B0.9700
C9—H9A0.9700C14—H140.9300
C9—H9B0.9700O1W—H1W0.933 (10)
C5—C61.484 (3)O1W—H2W0.931 (10)
C5—H5A0.9700
C1—S1—C492.43 (12)C7—C8—H8A109.5
C7—N3—C6105.21 (16)C7—C8—H8B109.5
C7—N3—C9126.96 (17)H8A—C8—H8B109.5
C6—N3—C9127.76 (17)C7—C8—H8C109.5
C6—N1—N2107.03 (16)H8A—C8—H8C109.5
C14—N4—C12106.5 (2)H8B—C8—H8C109.5
C14—N4—C11127.4 (2)C9—C10—C11112.50 (19)
C12—N4—C11126.1 (2)C9—C10—H10A109.1
C7—N2—N1107.71 (16)C11—C10—H10A109.1
C3—C4—C5128.1 (2)C9—C10—H10B109.1
C3—C4—S1110.58 (17)C11—C10—H10B109.1
C5—C4—S1121.31 (16)H10A—C10—H10B107.8
N2—C7—N3109.94 (18)N1—C6—N3110.11 (17)
N2—C7—C8125.73 (19)N1—C6—C5125.08 (18)
N3—C7—C8124.32 (19)N3—C6—C5124.80 (18)
C14—N5—C13104.7 (2)C1—C2—C3112.9 (2)
N3—C9—C10112.32 (16)C1—C2—H2123.5
N3—C9—H9A109.1C3—C2—H2123.5
C10—C9—H9A109.1C2—C1—S1112.2 (2)
N3—C9—H9B109.1C2—C1—H1123.9
C10—C9—H9B109.1S1—C1—H1123.9
H9A—C9—H9B107.9C12—C13—N5110.7 (2)
C6—C5—C4113.35 (18)C12—C13—H13124.7
C6—C5—H5A108.9N5—C13—H13124.7
C4—C5—H5A108.9N4—C11—C10112.13 (18)
C6—C5—H5B108.9N4—C11—H11A109.2
C4—C5—H5B108.9C10—C11—H11A109.2
H5A—C5—H5B107.7N4—C11—H11B109.2
C4—C3—C2111.9 (2)C10—C11—H11B109.2
C4—C3—H3124.1H11A—C11—H11B107.9
C2—C3—H3124.1N5—C14—N4112.3 (2)
C13—C12—N4105.7 (2)N5—C14—H14123.8
C13—C12—H12127.1N4—C14—H14123.8
N4—C12—H12127.1H1W—O1W—H2W116.6 (17)
C6—N1—N2—C70.0 (2)C4—C5—C6—N368.3 (3)
C1—S1—C4—C3−0.50 (17)C4—C3—C2—C1−0.6 (3)
C1—S1—C4—C5178.72 (18)C3—C2—C1—S10.2 (3)
N1—N2—C7—N30.0 (2)C4—S1—C1—C20.2 (2)
N1—N2—C7—C8−179.0 (2)N4—C12—C13—N50.3 (3)
C6—N3—C7—N2−0.1 (2)C14—N5—C13—C12−0.5 (3)
C9—N3—C7—N2177.05 (18)C14—N4—C11—C10−123.4 (3)
C6—N3—C7—C8179.0 (2)C12—N4—C11—C1054.5 (3)
C9—N3—C7—C8−3.9 (3)C9—C10—C11—N461.6 (3)
C7—N3—C9—C10−85.2 (2)C13—N5—C14—N40.5 (3)
C6—N3—C9—C1091.3 (2)C12—N4—C14—N5−0.3 (3)
C3—C4—C5—C6−126.8 (2)C11—N4—C14—N5177.9 (2)
S1—C4—C5—C654.2 (2)C3—C4—C5—C6−126.8 (2)
C5—C4—C3—C2−178.5 (2)S1—C4—C5—C654.2 (2)
S1—C4—C3—C20.7 (2)C4—C5—C6—N368.3 (3)
C14—N4—C12—C130.0 (2)C4—C5—C6—N1−110.2 (2)
C11—N4—C12—C13−178.3 (2)C5—C6—N3—C94.3 (3)
N3—C9—C10—C11−178.95 (18)C6—N3—C9—C1091.3 (2)
N2—N1—C6—N30.0 (2)N3—C9—C10—C11−178.95 (18)
N2—N1—C6—C5178.65 (19)C9—C10—C11—N461.6 (3)
C7—N3—C6—N10.0 (2)C10—C11—N4—C1254.5 (3)
C9—N3—C6—N1−177.03 (18)C10—C11—N4—C14−123.4 (3)
C7—N3—C6—C5−178.63 (19)C8—C7—N3—C9−3.9 (3)
C9—N3—C6—C54.3 (3)C7—N3—C9—C10−85.2 (2)
C4—C5—C6—N1−110.2 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H2W···N5i0.93 (1)2.04 (2)2.915 (4)155 (4)
O1W—H1W···N20.93 (1)2.05 (2)2.948 (3)161 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2W⋯N5i0.93 (1)2.04 (2)2.915 (4)155 (4)
O1W—H1W⋯N20.93 (1)2.05 (2)2.948 (3)161 (4)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Benzoylmethyl-4-[(2-benzylidene-ethylidene)amino]-5-(2-thienylmethyl)-2H-1,2,4-triazol-3(4H)-one.

Authors:  Reşat Ustabaş; Yasemin Unver; Nevin Suleymanoğlu; Ufuk Coruh; Kemal Sancak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

3.  4-Amino-3-(1-naphthyl-oxymeth-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; A M Vijesh; Shridhar Malladi; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  4-(4-Meth-oxy-pheneth-yl)-3,5-diphenyl-4H-1,2,4-triazole.

Authors:  G Anuradha; G Vasuki; Dilek Unlüer; Emrah Birinci
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-14
  1 in total

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