Literature DB >> 21589428

Benzoic acid-2,2'-biimidazole (2/1).

Xiaoli Gao, Miaoli Zhu.   

Abstract

In the title compound, C(6)H(6)N(4)·2C(7)H(6)O(2), the asymmetric unit contains a half-mol-ecule of biimidazole and one benzoic acid mol-ecule. The unit cell contains two biimidazole mol-ecules and four benzoic acid mol-ecules, giving the reported 2:1 ratio of benzoic acid to biimidazole. The biimidazole mol-ecule is located on an inversion center (passing through the central C-C bond). Strong N-H⋯O and O-H⋯N hydrogen bonds link the benzoic acid mol-ecules with the neutral biimidazole mol-ecules, which lie in planar sheets. In the crystal packing, the parallel sheets are related by a twofold rotation axis and an inversion centre, respectively, forming an inter-woven three-dimensional network via weak C=O⋯π inter-molecular inter-actions between neighboring mol-ecules.

Entities:  

Year:  2010        PMID: 21589428      PMCID: PMC3011557          DOI: 10.1107/S1600536810045368

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of 2,2′-biimidazoles in crystal engineering, see: Matthews et al. (1990 ▶); Tadokoro & Nakasuji (2000 ▶). For similar structures, see: Gao et al. (2009 ▶); Li & Yang (2006 ▶); Mori & Miyoshi (2004 ▶).

Experimental

Crystal data

C6H6N4·2C7H6O2 M = 378.38 Monoclinic, a = 11.232 (5) Å b = 5.082 (2) Å c = 16.342 (7) Å β = 99.832 (6)° V = 919.2 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.40 × 0.20 × 0.10 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.962, T max = 0.990 3367 measured reflections 1550 independent reflections 1243 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.098 wR(F 2) = 0.188 S = 1.25 1550 reflections 131 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810045368/fl2323sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045368/fl2323Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6N4·2C7H6O2F(000) = 396
Mr = 378.38Dx = 1.367 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 698 reflections
a = 11.232 (5) Åθ = 2.5–20.8°
b = 5.082 (2) ŵ = 0.10 mm1
c = 16.342 (7) ÅT = 298 K
β = 99.832 (6)°Block, colorless
V = 919.2 (7) Å30.40 × 0.20 × 0.10 mm
Z = 2
Bruker SMART 1K CCD area-detector diffractometer1550 independent reflections
Radiation source: fine-focus sealed tube1243 reflections with I > 2σ(I)
graphiteRint = 0.047
ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −13→12
Tmin = 0.962, Tmax = 0.990k = −6→2
3367 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.098Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.188H atoms treated by a mixture of independent and constrained refinement
S = 1.25w = 1/[σ2(Fo2) + (0.0425P)2 + 1.0781P] where P = (Fo2 + 2Fc2)/3
1550 reflections(Δ/σ)max < 0.001
131 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3655 (3)0.6966 (8)0.4607 (2)0.0406 (10)
H10.383 (4)0.809 (10)0.423 (3)0.064 (17)*
N20.3784 (3)0.3740 (7)0.5510 (2)0.0389 (9)
C10.4360 (4)0.5176 (8)0.5031 (2)0.0307 (10)
C20.2533 (4)0.6694 (10)0.4821 (3)0.0436 (12)
H20.18460.76790.46240.052*
C30.2630 (4)0.4717 (10)0.5372 (3)0.0453 (12)
H30.20030.40970.56250.054*
C40.4969 (4)0.1219 (9)0.3172 (3)0.0376 (11)
C50.4964 (4)0.3271 (9)0.2521 (2)0.0347 (10)
C60.5982 (4)0.3745 (10)0.2158 (3)0.0451 (12)
H60.66870.27900.23290.054*
C70.5946 (4)0.5616 (10)0.1549 (3)0.0516 (13)
H70.66250.59160.13080.062*
C80.4913 (4)0.7050 (10)0.1294 (3)0.0491 (13)
H80.48970.83210.08830.059*
C90.3913 (4)0.6618 (10)0.1641 (3)0.0458 (12)
H90.32160.75950.14680.055*
C100.3934 (4)0.4739 (10)0.2247 (3)0.0441 (12)
H100.32440.44470.24780.053*
O10.5977 (3)−0.0029 (7)0.3367 (2)0.0532 (10)
H1A0.5971−0.11860.37470.080*
O20.4086 (3)0.0801 (7)0.3491 (2)0.0517 (9)
U11U22U33U12U13U23
N10.043 (2)0.037 (2)0.042 (2)−0.0004 (19)0.0097 (18)0.009 (2)
N20.041 (2)0.035 (2)0.043 (2)−0.0011 (18)0.0116 (17)0.0088 (19)
C10.044 (2)0.022 (2)0.027 (2)0.003 (2)0.0077 (19)0.0055 (19)
C20.037 (3)0.048 (3)0.046 (3)0.004 (2)0.007 (2)0.000 (3)
C30.032 (2)0.057 (3)0.048 (3)0.000 (2)0.009 (2)0.011 (3)
C40.041 (3)0.029 (2)0.043 (3)−0.004 (2)0.009 (2)−0.002 (2)
C50.038 (2)0.032 (3)0.034 (2)−0.004 (2)0.0064 (19)−0.005 (2)
C60.037 (3)0.046 (3)0.053 (3)0.002 (2)0.012 (2)0.008 (3)
C70.048 (3)0.052 (3)0.060 (3)−0.001 (3)0.024 (2)0.013 (3)
C80.051 (3)0.048 (3)0.049 (3)−0.003 (3)0.008 (2)0.013 (3)
C90.036 (3)0.046 (3)0.054 (3)0.006 (2)0.004 (2)0.009 (3)
C100.033 (2)0.055 (3)0.046 (3)−0.005 (2)0.013 (2)0.002 (3)
O10.0371 (17)0.058 (2)0.065 (2)0.0067 (18)0.0089 (15)0.0244 (19)
O20.0465 (19)0.051 (2)0.063 (2)0.0094 (17)0.0220 (16)0.0155 (18)
N1—C11.322 (5)C5—C101.385 (6)
N1—C21.371 (5)C5—C61.397 (6)
N1—H10.88 (5)C6—C71.371 (6)
N2—C11.319 (5)C6—H60.9300
N2—C31.370 (5)C7—C81.374 (6)
C1—C1i1.469 (8)C7—H70.9300
C2—C31.342 (6)C8—C91.359 (6)
C2—H20.9300C8—H80.9300
C3—H30.9300C9—C101.373 (6)
C4—O21.216 (5)C9—H90.9300
C4—O11.289 (5)C10—H100.9300
C4—C51.489 (6)O1—H1A0.8564
C1—N1—C2106.9 (4)C6—C5—C4121.4 (4)
C1—N1—H1129 (3)C7—C6—C5120.1 (4)
C2—N1—H1124 (3)C7—C6—H6119.9
C1—N2—C3104.4 (4)C5—C6—H6119.9
N2—C1—N1112.4 (4)C6—C7—C8120.5 (4)
N2—C1—C1i124.0 (5)C6—C7—H7119.8
N1—C1—C1i123.6 (5)C8—C7—H7119.8
C3—C2—N1105.9 (4)C9—C8—C7120.2 (5)
C3—C2—H2127.0C9—C8—H8119.9
N1—C2—H2127.0C7—C8—H8119.9
C2—C3—N2110.4 (4)C8—C9—C10120.0 (4)
C2—C3—H3124.8C8—C9—H9120.0
N2—C3—H3124.8C10—C9—H9120.0
O2—C4—O1123.6 (4)C9—C10—C5121.2 (4)
O2—C4—C5121.7 (4)C9—C10—H10119.4
O1—C4—C5114.7 (4)C5—C10—H10119.4
C10—C5—C6118.0 (4)C4—O1—H1A113.7
C10—C5—C4120.6 (4)
C3—N2—C1—N10.0 (5)O1—C4—C5—C60.5 (6)
C3—N2—C1—C1i−179.6 (5)C10—C5—C6—C70.0 (7)
C2—N1—C1—N20.0 (5)C4—C5—C6—C7178.9 (4)
C2—N1—C1—C1i179.6 (5)C5—C6—C7—C80.4 (7)
C1—N1—C2—C30.0 (5)C6—C7—C8—C9−0.3 (8)
N1—C2—C3—N20.0 (5)C7—C8—C9—C10−0.1 (7)
C1—N2—C3—C20.0 (5)C8—C9—C10—C50.5 (7)
O2—C4—C5—C10−1.3 (6)C6—C5—C10—C9−0.4 (7)
O1—C4—C5—C10179.3 (4)C4—C5—C10—C9−179.3 (4)
O2—C4—C5—C6179.8 (4)
Cg1 is the centroid of the [please define] ring.
D—H···AD—HH···AD···AD—H···A
O1—H1A···N2ii0.861.772.613 (5)170
N1—H1···O2iii0.88 (5)1.89 (5)2.767 (5)173 (5)
C4—O2···Cg11.216 (5)3.674 (2)4.388 (2)118.37 (6)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the N1/C1/N2/C3/C2 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N2i0.861.772.613 (5)170
N1—H1⋯O2ii0.88 (5)1.89 (5)2.767 (5)173 (5)
C4—O2⋯Cg11.22 (1)3.67 (1)4.388 (2)118 (1)

Symmetry codes: (i) ; (ii) .

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