Literature DB >> 21589391

4-(3-Fluoro-4-meth-oxy-phen-yl)-1-(4-meth-oxy-phen-yl)-5-(3,4,5-trimeth-oxy-phen-yl)-1H-imidazole.

Xiao-Meng Zhang1, Cang Zhang, Wen-Ping Zhang, Xiao-Rong Liu.   

Abstract

In the title mol-ecule, C(26)H(25)FN(2)O(5), the fluoro-meth-oxy-, meth-oxy- and trimeth-oxy-substituted benzene rings form dihedral angles of 12.65 (2), 84.15 (2) and 55.67 (2)°, respectively, with the imidazole ring. The crystal structure is stabilized weak inter-molecular C-H⋯F and C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21589391      PMCID: PMC3011382          DOI: 10.1107/S160053681004465X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the pharmacological activity of imidazole derivatives, see: Bellina et al. (2006 ▶, 2007 ▶); Cai et al. (2009 ▶). For background to synthetic methods for imidizoles, see: Bräuer et al. (2005 ▶), Wang et al. (2002 ▶).

Experimental

Crystal data

C26H25FN2O5 M = 464.48 Triclinic, a = 9.795 (2) Å b = 10.202 (2) Å c = 13.008 (3) Å α = 104.76 (3)° β = 109.81 (3)° γ = 91.45 (3)° V = 1173.7 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.972, T max = 0.981 4540 measured reflections 4269 independent reflections 2838 reflections with I > 2σ(I) R int = 0.024 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.178 S = 1.00 4269 reflections 308 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004465X/lh5129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004465X/lh5129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H25FN2O5Z = 2
Mr = 464.48F(000) = 488
Triclinic, P1Dx = 1.314 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.795 (2) ÅCell parameters from 25 reflections
b = 10.202 (2) Åθ = 9–13°
c = 13.008 (3) ŵ = 0.10 mm1
α = 104.76 (3)°T = 293 K
β = 109.81 (3)°Block, colourless
γ = 91.45 (3)°0.30 × 0.20 × 0.20 mm
V = 1173.7 (4) Å3
Enraf–Nonius CAD-4 diffractometer2838 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
graphiteθmax = 25.3°, θmin = 1.7°
ω/–2θ scansh = 0→11
Absorption correction: ψ scan (North et al., 1968)k = −12→12
Tmin = 0.972, Tmax = 0.981l = −15→14
4540 measured reflections3 standard reflections every 200 reflections
4269 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.178w = 1/[σ2(Fo2) + (0.070P)2 + 1.1P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4269 reflectionsΔρmax = 0.23 e Å3
308 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.063 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F−0.1298 (3)0.7973 (2)−0.06705 (17)0.0787 (7)
N10.2523 (3)0.9865 (2)0.5152 (2)0.0456 (6)
O10.5861 (3)1.1432 (3)0.9767 (2)0.0814 (8)
C10.5238 (6)1.2059 (5)1.0579 (3)0.0915 (14)
H1A0.59751.22931.13270.137*
H1B0.44601.14371.05430.137*
H1C0.48591.28721.04170.137*
N20.1490 (3)1.0175 (2)0.3441 (2)0.0504 (7)
O2−0.2366 (3)0.5452 (3)−0.0943 (2)0.0697 (7)
C20.4976 (4)1.1028 (3)0.8645 (3)0.0549 (8)
O30.3163 (3)0.3936 (2)0.44874 (19)0.0619 (7)
C30.5629 (4)1.0514 (4)0.7881 (3)0.0702 (11)
H3A0.66251.04360.81410.084*
O40.2214 (3)0.4035 (2)0.61811 (19)0.0558 (6)
C40.4832 (4)1.0104 (4)0.6723 (3)0.0607 (9)
H4A0.52870.97530.62070.073*
O50.1123 (3)0.6229 (2)0.7079 (2)0.0610 (7)
C50.3357 (3)1.0222 (3)0.6343 (3)0.0447 (7)
C60.2704 (4)1.0724 (3)0.7116 (3)0.0544 (8)
H6A0.17071.07950.68610.065*
C70.3502 (4)1.1125 (3)0.8265 (3)0.0575 (9)
H7A0.30461.14620.87820.069*
C80.1876 (3)0.8580 (3)0.4414 (2)0.0423 (7)
C90.1239 (3)0.8803 (3)0.3364 (3)0.0429 (7)
C100.2242 (4)1.0762 (3)0.4503 (3)0.0520 (8)
H10A0.25571.16940.47950.062*
C110.0325 (3)0.7870 (3)0.2272 (3)0.0432 (7)
C12−0.0271 (4)0.6560 (3)0.2128 (3)0.0491 (8)
H12A−0.00590.62300.27620.059*
C13−0.1153 (4)0.5736 (3)0.1099 (3)0.0552 (8)
H13A−0.15270.48640.10450.066*
C14−0.1503 (4)0.6184 (3)0.0124 (3)0.0528 (8)
C15−0.0923 (4)0.7503 (3)0.0273 (3)0.0516 (8)
C16−0.0043 (4)0.8328 (3)0.1282 (3)0.0482 (8)
H16A0.03250.91990.13310.058*
C17−0.2849 (5)0.4069 (4)−0.1106 (3)0.0742 (11)
H17A−0.34440.3664−0.18900.111*
H17B−0.34120.4023−0.06360.111*
H17C−0.20180.3582−0.09010.111*
C180.1942 (3)0.7367 (3)0.4859 (2)0.0424 (7)
C190.1424 (3)0.7387 (3)0.5724 (3)0.0464 (7)
H19A0.09950.81330.59990.056*
C200.1548 (3)0.6278 (3)0.6190 (3)0.0455 (7)
C210.2126 (3)0.5149 (3)0.5745 (3)0.0444 (7)
C220.2609 (3)0.5107 (3)0.4851 (3)0.0457 (7)
C230.2545 (3)0.6233 (3)0.4415 (3)0.0451 (7)
H23A0.29010.62270.38360.054*
C240.3521 (5)0.3753 (4)0.3498 (3)0.0719 (11)
H24A0.38970.28940.33410.108*
H24B0.42480.44800.36160.108*
H24C0.26610.37610.28650.108*
C250.3515 (5)0.4118 (4)0.7100 (3)0.0786 (12)
H25A0.35070.33180.73590.118*
H25B0.35950.49150.77080.118*
H25C0.43340.41760.68590.118*
C260.0553 (5)0.7381 (4)0.7569 (4)0.0830 (13)
H26A0.02990.72190.81810.125*
H26B−0.03020.75400.70020.125*
H26C0.12760.81660.78580.125*
U11U22U33U12U13U23
F0.1042 (17)0.0838 (15)0.0550 (12)0.0114 (13)0.0226 (12)0.0389 (11)
N10.0594 (16)0.0340 (13)0.0464 (15)0.0092 (11)0.0185 (13)0.0167 (11)
O10.0788 (19)0.0852 (19)0.0605 (17)0.0057 (15)0.0072 (15)0.0113 (14)
C10.123 (4)0.085 (3)0.052 (2)0.019 (3)0.024 (3)0.005 (2)
N20.0684 (18)0.0358 (13)0.0547 (17)0.0137 (12)0.0234 (14)0.0232 (12)
O20.0814 (18)0.0646 (16)0.0522 (15)0.0070 (13)0.0110 (13)0.0156 (12)
C20.061 (2)0.0477 (19)0.0484 (19)0.0045 (16)0.0119 (17)0.0108 (15)
O30.1000 (19)0.0350 (12)0.0610 (15)0.0220 (12)0.0352 (14)0.0209 (10)
C30.049 (2)0.083 (3)0.071 (3)0.0134 (19)0.0136 (19)0.020 (2)
O40.0710 (15)0.0387 (11)0.0615 (14)0.0044 (10)0.0172 (12)0.0295 (10)
C40.060 (2)0.065 (2)0.062 (2)0.0126 (17)0.0282 (19)0.0176 (18)
O50.0809 (17)0.0573 (14)0.0681 (15)0.0218 (12)0.0422 (13)0.0346 (12)
C50.0514 (19)0.0316 (15)0.0519 (18)0.0052 (13)0.0165 (15)0.0155 (13)
C60.0480 (19)0.054 (2)0.061 (2)0.0133 (15)0.0212 (17)0.0119 (16)
C70.065 (2)0.054 (2)0.054 (2)0.0107 (17)0.0245 (18)0.0133 (16)
C80.0473 (17)0.0326 (15)0.0496 (18)0.0093 (13)0.0179 (14)0.0149 (13)
C90.0481 (18)0.0360 (15)0.0533 (18)0.0134 (13)0.0222 (15)0.0211 (14)
C100.071 (2)0.0333 (16)0.057 (2)0.0118 (15)0.0236 (18)0.0201 (15)
C110.0494 (18)0.0431 (17)0.0466 (17)0.0145 (14)0.0221 (14)0.0212 (14)
C120.059 (2)0.0487 (18)0.0434 (18)0.0085 (15)0.0148 (15)0.0235 (15)
C130.058 (2)0.0478 (19)0.057 (2)0.0069 (16)0.0150 (17)0.0185 (16)
C140.053 (2)0.058 (2)0.0455 (19)0.0140 (16)0.0131 (16)0.0155 (16)
C150.066 (2)0.059 (2)0.0451 (19)0.0219 (17)0.0278 (17)0.0281 (16)
C160.059 (2)0.0453 (17)0.0514 (19)0.0146 (15)0.0286 (16)0.0203 (15)
C170.074 (3)0.064 (2)0.067 (2)0.009 (2)0.009 (2)0.0104 (19)
C180.0471 (17)0.0318 (15)0.0469 (17)0.0044 (13)0.0122 (14)0.0149 (13)
C190.0529 (19)0.0378 (16)0.0532 (18)0.0113 (14)0.0210 (15)0.0177 (14)
C200.0471 (18)0.0424 (17)0.0512 (18)0.0032 (14)0.0172 (15)0.0207 (14)
C210.0501 (18)0.0338 (15)0.0476 (17)0.0015 (13)0.0099 (14)0.0194 (13)
C220.0550 (19)0.0325 (15)0.0460 (17)0.0070 (13)0.0115 (15)0.0138 (13)
C230.0574 (19)0.0376 (16)0.0449 (17)0.0096 (14)0.0184 (15)0.0187 (13)
C240.107 (3)0.052 (2)0.069 (2)0.026 (2)0.045 (2)0.0175 (18)
C250.082 (3)0.073 (3)0.081 (3)0.006 (2)0.005 (2)0.053 (2)
C260.108 (3)0.092 (3)0.094 (3)0.049 (3)0.067 (3)0.056 (3)
F—C151.369 (3)C9—C111.459 (4)
N1—C101.369 (4)C10—H10A0.9300
N1—C81.395 (4)C11—C121.387 (4)
N1—C51.429 (4)C11—C161.416 (4)
O1—C21.367 (4)C12—C131.360 (4)
O1—C11.418 (5)C12—H12A0.9300
C1—H1A0.9600C13—C141.394 (4)
C1—H1B0.9600C13—H13A0.9300
C1—H1C0.9600C14—C151.387 (5)
N2—C101.295 (4)C15—C161.345 (5)
N2—C91.388 (4)C16—H16A0.9300
O2—C141.358 (4)C17—H17A0.9600
O2—C171.417 (4)C17—H17B0.9600
C2—C31.361 (5)C17—H17C0.9600
C2—C71.374 (5)C18—C191.379 (4)
O3—C221.365 (4)C18—C231.395 (4)
O3—C241.415 (4)C19—C201.403 (4)
C3—C41.385 (5)C19—H19A0.9300
C3—H3A0.9300C20—C211.377 (4)
O4—C211.386 (3)C21—C221.389 (4)
O4—C251.404 (4)C22—C231.398 (4)
C4—C51.380 (5)C23—H23A0.9300
C4—H4A0.9300C24—H24A0.9600
O5—C201.366 (4)C24—H24B0.9600
O5—C261.411 (4)C24—H24C0.9600
C5—C61.367 (4)C25—H25A0.9600
C6—C71.376 (5)C25—H25B0.9600
C6—H6A0.9300C25—H25C0.9600
C7—H7A0.9300C26—H26A0.9600
C8—C91.377 (4)C26—H26B0.9600
C8—C181.488 (4)C26—H26C0.9600
C10—N1—C8106.4 (2)O2—C14—C15117.8 (3)
C10—N1—C5124.9 (3)O2—C14—C13125.8 (3)
C8—N1—C5128.6 (2)C15—C14—C13116.4 (3)
C2—O1—C1118.1 (3)C16—C15—F119.4 (3)
O1—C1—H1A109.5C16—C15—C14123.6 (3)
O1—C1—H1B109.5F—C15—C14117.0 (3)
H1A—C1—H1B109.5C15—C16—C11120.1 (3)
O1—C1—H1C109.5C15—C16—H16A120.0
H1A—C1—H1C109.5C11—C16—H16A120.0
H1B—C1—H1C109.5O2—C17—H17A109.5
C10—N2—C9105.5 (2)O2—C17—H17B109.5
C14—O2—C17117.4 (3)H17A—C17—H17B109.5
C3—C2—O1116.5 (3)O2—C17—H17C109.5
C3—C2—C7119.7 (3)H17A—C17—H17C109.5
O1—C2—C7123.8 (3)H17B—C17—H17C109.5
C22—O3—C24118.2 (2)C19—C18—C23120.5 (3)
C2—C3—C4120.9 (3)C19—C18—C8119.3 (3)
C2—C3—H3A119.5C23—C18—C8120.1 (3)
C4—C3—H3A119.5C18—C19—C20119.9 (3)
C21—O4—C25113.7 (2)C18—C19—H19A120.1
C5—C4—C3119.3 (3)C20—C19—H19A120.1
C5—C4—H4A120.4O5—C20—C21116.2 (3)
C3—C4—H4A120.4O5—C20—C19124.1 (3)
C20—O5—C26117.6 (3)C21—C20—C19119.7 (3)
C6—C5—C4119.5 (3)C20—C21—O4120.0 (3)
C6—C5—N1120.1 (3)C20—C21—C22120.6 (3)
C4—C5—N1120.4 (3)O4—C21—C22119.4 (3)
C5—C6—C7120.9 (3)O3—C22—C21115.0 (3)
C5—C6—H6A119.6O3—C22—C23125.1 (3)
C7—C6—H6A119.6C21—C22—C23119.8 (3)
C2—C7—C6119.7 (3)C18—C23—C22119.3 (3)
C2—C7—H7A120.1C18—C23—H23A120.3
C6—C7—H7A120.1C22—C23—H23A120.3
C9—C8—N1104.9 (2)O3—C24—H24A109.5
C9—C8—C18134.8 (3)O3—C24—H24B109.5
N1—C8—C18120.2 (3)H24A—C24—H24B109.5
C8—C9—N2110.4 (3)O3—C24—H24C109.5
C8—C9—C11130.6 (3)H24A—C24—H24C109.5
N2—C9—C11118.9 (3)H24B—C24—H24C109.5
N2—C10—N1112.8 (3)O4—C25—H25A109.5
N2—C10—H10A123.6O4—C25—H25B109.5
N1—C10—H10A123.6H25A—C25—H25B109.5
C12—C11—C16116.3 (3)O4—C25—H25C109.5
C12—C11—C9124.6 (3)H25A—C25—H25C109.5
C16—C11—C9119.0 (3)H25B—C25—H25C109.5
C13—C12—C11122.8 (3)O5—C26—H26A109.5
C13—C12—H12A118.6O5—C26—H26B109.5
C11—C12—H12A118.6H26A—C26—H26B109.5
C12—C13—C14120.7 (3)O5—C26—H26C109.5
C12—C13—H13A119.6H26A—C26—H26C109.5
C14—C13—H13A119.6H26B—C26—H26C109.5
C1—O1—C2—C3175.7 (4)C17—O2—C14—C13−6.2 (5)
C1—O1—C2—C7−3.7 (5)C12—C13—C14—O2179.9 (3)
O1—C2—C3—C4−178.6 (3)C12—C13—C14—C15−1.0 (5)
C7—C2—C3—C40.9 (6)O2—C14—C15—C16−179.3 (3)
C2—C3—C4—C50.1 (6)C13—C14—C15—C161.4 (5)
C3—C4—C5—C6−0.9 (5)O2—C14—C15—F1.4 (5)
C3—C4—C5—N1177.2 (3)C13—C14—C15—F−177.9 (3)
C10—N1—C5—C683.9 (4)F—C15—C16—C11178.4 (3)
C8—N1—C5—C6−97.9 (4)C14—C15—C16—C11−0.9 (5)
C10—N1—C5—C4−94.1 (4)C12—C11—C16—C15−0.1 (4)
C8—N1—C5—C484.1 (4)C9—C11—C16—C15−177.8 (3)
C4—C5—C6—C70.7 (5)C9—C8—C18—C19−121.5 (4)
N1—C5—C6—C7−177.3 (3)N1—C8—C18—C1955.6 (4)
C3—C2—C7—C6−1.1 (5)C9—C8—C18—C2359.6 (5)
O1—C2—C7—C6178.4 (3)N1—C8—C18—C23−123.3 (3)
C5—C6—C7—C20.3 (5)C23—C18—C19—C202.1 (5)
C10—N1—C8—C9−0.3 (3)C8—C18—C19—C20−176.8 (3)
C5—N1—C8—C9−178.7 (3)C26—O5—C20—C21178.7 (3)
C10—N1—C8—C18−178.2 (3)C26—O5—C20—C19−1.3 (5)
C5—N1—C8—C183.4 (5)C18—C19—C20—O5177.2 (3)
N1—C8—C9—N20.5 (3)C18—C19—C20—C21−2.9 (5)
C18—C8—C9—N2177.9 (3)O5—C20—C21—O41.7 (4)
N1—C8—C9—C11−175.5 (3)C19—C20—C21—O4−178.2 (3)
C18—C8—C9—C112.0 (6)O5—C20—C21—C22−179.1 (3)
C10—N2—C9—C8−0.5 (4)C19—C20—C21—C221.0 (5)
C10—N2—C9—C11176.0 (3)C25—O4—C21—C20−88.7 (4)
C9—N2—C10—N10.4 (4)C25—O4—C21—C2292.1 (4)
C8—N1—C10—N2−0.1 (4)C24—O3—C22—C21172.9 (3)
C5—N1—C10—N2178.5 (3)C24—O3—C22—C23−9.1 (5)
C8—C9—C11—C1210.4 (5)C20—C21—C22—O3179.8 (3)
N2—C9—C11—C12−165.3 (3)O4—C21—C22—O3−1.0 (4)
C8—C9—C11—C16−172.2 (3)C20—C21—C22—C231.7 (5)
N2—C9—C11—C1612.1 (4)O4—C21—C22—C23−179.1 (3)
C16—C11—C12—C130.6 (5)C19—C18—C23—C220.6 (4)
C9—C11—C12—C13178.1 (3)C8—C18—C23—C22179.4 (3)
C11—C12—C13—C140.0 (5)O3—C22—C23—C18179.6 (3)
C17—O2—C14—C15174.6 (3)C21—C22—C23—C18−2.5 (5)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O3i0.932.513.346 (4)150
C26—H26A···Fii0.962.523.326 (6)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O3i0.932.513.346 (4)150
C26—H26A⋯Fii0.962.523.326 (6)142

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Evolutionary chemistry approach toward finding novel inhibitors of the type 2 diabetes target glucose-6-phosphate translocase.

Authors:  Silke Bräuer; Michael Almstetter; Walfrido Antuch; Dirk Behnke; Roswitha Taube; Patrick Furer; Sibylle Hess
Journal:  J Comb Chem       Date:  2005 Mar-Apr

3.  Novel imidazole-based combretastatin A-4 analogues: evaluation of their in vitro antitumor activity and molecular modeling study of their binding to the colchicine site of tubulin.

Authors:  Fabio Bellina; Silvia Cauteruccio; Susanna Monti; Renzo Rossi
Journal:  Bioorg Med Chem Lett       Date:  2006-09-06       Impact factor: 2.823

4.  Potent, orally active heterocycle-based combretastatin A-4 analogues: synthesis, structure-activity relationship, pharmacokinetics, and in vivo antitumor activity evaluation.

Authors:  Le Wang; Keith W Woods; Qun Li; Kenneth J Barr; Richard W McCroskey; Steven M Hannick; Laura Gherke; R Bruce Credo; Yu-Hua Hui; Kennan Marsh; Robert Warner; Jang Y Lee; Nicolette Zielinski-Mozng; David Frost; Saul H Rosenberg; Hing L Sham
Journal:  J Med Chem       Date:  2002-04-11       Impact factor: 7.446

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.