Literature DB >> 21589388

(1R,4aS,10aR)-1,4a-Dimethyl-N-[(morpholin-4-yl)carbothio-yl]-7-(propan-2-yl)-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthrene-1-carboxamide.

Xiao-Ping Rao, Yong Wu, Zhan-Qian Song, Shi-Bin Shang.   

Abstract

In the title compound, C(25)H(36)N(2)O(2)S, the cyclo-hexane and morpholine rings adopt chair conformations. The cyclo-hexene and cyclo-hexane rings form a trans ring junction with the two methyl groups in axial positions. The N-H and C=O bonds in the urea group are anti to each other. The crystal structure is stabilized by inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21589388      PMCID: PMC3011422          DOI: 10.1107/S1600536810044569

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Dehydro­abietic acid is an abietane diterpenic resin acid which can be easily obtained from Pinus resin or commercial disproportionated rosin, see: Halbrook & Lawrence (1966 ▶). For the biological activity of dehydro­abietic aid derivatives, see: Rao et al. (2008 ▶); Sepulveda et al. (2005 ▶); Wada et al. (1985 ▶); For the crystal structures of dehydro­abietic acid derivatives, see: Rao et al. (2006 ▶, 2009 ▶, 2010 ▶).

Experimental

Crystal data

C25H36N2O2S M = 428.62 Orthorhombic, a = 9.887 (2) Å b = 15.114 (3) Å c = 16.128 (3) Å V = 2410.0 (8) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Entaf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.954, T max = 0.969 4802 measured reflections 4370 independent reflections 3137 reflections with I > 2σ(I) R int = 0.115 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.189 S = 1.00 4370 reflections 271 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 1882 Friedel pairs Flack parameter: −0.08 (16) Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810044569/bq2238sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810044569/bq2238Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H36N2O2SDx = 1.181 Mg m3
Mr = 428.62Melting point: 416 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 9.887 (2) Åθ = 9–12°
b = 15.114 (3) ŵ = 0.16 mm1
c = 16.128 (3) ÅT = 293 K
V = 2410.0 (8) Å3Block, white
Z = 40.30 × 0.20 × 0.20 mm
F(000) = 928
Entaf–Nonius CAD-4 diffractometer3137 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.115
graphiteθmax = 25.3°, θmin = 1.9°
ω/2θ scansh = −11→0
Absorption correction: ψ scan (North et al., 1968)k = −18→0
Tmin = 0.954, Tmax = 0.969l = −19→19
4802 measured reflections3 standard reflections every 200 reflections
4370 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.189w = 1/[σ2(Fo2) + (0.1P)2 + 1.4P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4370 reflectionsΔρmax = 0.37 e Å3
271 parametersΔρmin = −0.29 e Å3
0 restraintsAbsolute structure: Flack (1983), 1882 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.08 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.37704 (13)0.27732 (8)0.64677 (9)0.0548 (4)
N10.6164 (4)0.2465 (2)0.7135 (2)0.0375 (8)
H1A0.62600.29020.74710.045*
O10.7260 (4)0.1345 (2)0.6499 (3)0.0674 (11)
C10.9067 (5)0.2895 (3)0.7578 (3)0.0512 (12)
H1B0.83190.31240.79020.061*
H1C0.93780.23540.78410.061*
O20.4399 (4)−0.0552 (2)0.7323 (2)0.0628 (10)
N20.4599 (4)0.1318 (2)0.7235 (2)0.0441 (9)
C21.0214 (5)0.3570 (3)0.7579 (3)0.0544 (13)
H2A1.09970.33170.73050.065*
H2B1.04650.37030.81470.065*
C30.9808 (5)0.4423 (3)0.7140 (3)0.0483 (12)
H3A1.05870.48120.71200.058*
H3B0.91150.47150.74660.058*
C40.9273 (4)0.4294 (3)0.6252 (3)0.0385 (10)
C50.8566 (4)0.5146 (3)0.5947 (3)0.0374 (10)
C60.9104 (5)0.5970 (3)0.6155 (3)0.0453 (11)
H6A0.98890.59940.64720.054*
C70.8507 (5)0.6744 (3)0.5907 (3)0.0464 (12)
H7A0.88840.72800.60700.056*
C80.7352 (4)0.6744 (3)0.5417 (3)0.0403 (10)
C90.6837 (5)0.5923 (3)0.5200 (3)0.0425 (11)
H9A0.60710.59050.48660.051*
C100.7401 (4)0.5129 (3)0.5454 (3)0.0374 (10)
C110.6697 (5)0.4284 (3)0.5221 (3)0.0488 (12)
H11A0.65090.42930.46310.059*
H11B0.58380.42560.55100.059*
C120.7511 (5)0.3457 (3)0.5424 (3)0.0445 (11)
H12A0.82030.33650.50060.053*
H12B0.69220.29440.54280.053*
C130.8168 (4)0.3571 (3)0.6274 (3)0.0356 (9)
H13A0.74530.38170.66260.043*
C140.8569 (4)0.2682 (3)0.6697 (3)0.0435 (11)
C150.6686 (5)0.7591 (3)0.5142 (3)0.0500 (12)
H15A0.59320.74250.47790.060*
C160.7624 (6)0.8168 (4)0.4634 (5)0.082 (2)
H16A0.79760.78330.41770.123*
H16B0.83590.83670.49760.123*
H16C0.71340.86700.44270.123*
C170.6084 (7)0.8099 (4)0.5869 (4)0.0810 (19)
H17A0.56610.86300.56700.122*
H17B0.67890.82500.62530.122*
H17C0.54230.77370.61430.122*
C180.9621 (5)0.2146 (3)0.6222 (4)0.0611 (14)
H18A0.98130.16100.65190.092*
H18B1.04360.24870.61680.092*
H18C0.92780.20040.56820.092*
C191.0476 (5)0.4121 (3)0.5659 (4)0.0594 (14)
H19A1.01420.40340.51060.089*
H19B1.09540.36010.58350.089*
H19C1.10770.46200.56680.089*
C200.7293 (5)0.2095 (3)0.6764 (3)0.0438 (11)
C210.4855 (4)0.2135 (3)0.6969 (3)0.0387 (10)
C220.3343 (5)0.0860 (3)0.7021 (4)0.0557 (13)
H22A0.28670.11870.65940.067*
H22B0.27630.08240.75050.067*
C230.3668 (6)−0.0061 (3)0.6713 (3)0.0589 (14)
H23A0.2834−0.03690.65810.071*
H23B0.4202−0.00210.62100.071*
C240.5650 (6)−0.0118 (3)0.7501 (4)0.0636 (15)
H24A0.6194−0.00930.70010.076*
H24B0.6145−0.04580.79110.076*
C250.5432 (5)0.0809 (3)0.7822 (3)0.0542 (13)
H25A0.49840.07850.83570.065*
H25B0.62990.11000.78960.065*
U11U22U33U12U13U23
S0.0510 (7)0.0422 (6)0.0712 (9)0.0040 (6)−0.0122 (7)−0.0034 (6)
N10.0390 (18)0.0300 (16)0.0437 (19)−0.0022 (15)0.0017 (17)−0.0072 (14)
O10.069 (2)0.0348 (17)0.098 (3)−0.0044 (17)0.029 (2)−0.013 (2)
C10.049 (3)0.042 (2)0.062 (3)0.003 (2)−0.009 (2)0.013 (2)
O20.077 (2)0.0393 (17)0.072 (3)−0.0127 (17)0.001 (2)0.0057 (17)
N20.048 (2)0.0376 (19)0.047 (2)−0.0062 (17)0.0031 (19)−0.0024 (17)
C20.046 (3)0.053 (3)0.064 (3)0.000 (2)−0.014 (3)0.010 (2)
C30.040 (3)0.046 (3)0.059 (3)−0.002 (2)−0.012 (2)0.007 (2)
C40.033 (2)0.035 (2)0.047 (3)0.0017 (18)0.0019 (19)0.0043 (19)
C50.035 (2)0.037 (2)0.040 (2)−0.0001 (18)0.0056 (19)0.0028 (18)
C60.041 (3)0.043 (2)0.052 (3)−0.009 (2)−0.007 (2)0.007 (2)
C70.049 (3)0.037 (2)0.053 (3)−0.009 (2)−0.005 (2)0.003 (2)
C80.041 (2)0.043 (2)0.037 (3)−0.002 (2)0.006 (2)0.008 (2)
C90.042 (2)0.048 (3)0.038 (2)0.002 (2)−0.005 (2)0.002 (2)
C100.039 (2)0.036 (2)0.037 (2)−0.0033 (19)−0.001 (2)0.0014 (18)
C110.057 (3)0.046 (2)0.044 (3)−0.003 (2)−0.010 (2)−0.004 (2)
C120.054 (3)0.037 (2)0.042 (3)−0.006 (2)0.000 (2)−0.004 (2)
C130.033 (2)0.032 (2)0.042 (2)0.0029 (18)0.0044 (19)−0.0002 (18)
C140.039 (2)0.035 (2)0.056 (3)0.005 (2)0.000 (2)0.003 (2)
C150.055 (3)0.042 (3)0.053 (3)0.006 (2)−0.006 (2)0.008 (2)
C160.074 (4)0.071 (4)0.102 (5)0.008 (3)0.004 (4)0.041 (4)
C170.092 (4)0.076 (4)0.075 (4)0.038 (4)0.004 (4)−0.013 (3)
C180.048 (3)0.043 (3)0.093 (4)0.006 (2)0.014 (3)−0.001 (3)
C190.042 (3)0.056 (3)0.081 (4)0.000 (2)0.018 (3)0.008 (3)
C200.047 (3)0.033 (2)0.052 (3)0.004 (2)0.002 (2)0.004 (2)
C210.043 (2)0.035 (2)0.038 (2)0.002 (2)0.004 (2)−0.0102 (19)
C220.046 (3)0.049 (3)0.072 (4)−0.012 (2)0.007 (3)0.001 (3)
C230.072 (3)0.045 (3)0.060 (3)−0.017 (3)0.007 (3)−0.002 (2)
C240.070 (3)0.040 (3)0.080 (4)−0.004 (2)−0.004 (3)0.015 (3)
C250.068 (3)0.051 (3)0.043 (3)−0.009 (3)0.000 (3)0.013 (2)
S—C211.654 (5)C11—H11A0.9700
N1—C201.384 (6)C11—H11B0.9700
N1—C211.412 (6)C12—C131.526 (6)
N1—H1A0.8600C12—H12A0.9700
O1—C201.213 (5)C12—H12B0.9700
C1—C21.524 (6)C13—C141.559 (6)
C1—C141.539 (7)C13—H13A0.9800
C1—H1B0.9700C14—C181.524 (6)
C1—H1C0.9700C14—C201.546 (6)
O2—C241.429 (6)C15—C161.514 (8)
O2—C231.429 (6)C15—C171.523 (8)
N2—C211.330 (5)C15—H15A0.9800
N2—C221.464 (6)C16—H16A0.9600
N2—C251.472 (6)C16—H16B0.9600
C2—C31.525 (6)C16—H16C0.9600
C2—H2A0.9700C17—H17A0.9600
C2—H2B0.9700C17—H17B0.9600
C3—C41.538 (7)C17—H17C0.9600
C3—H3A0.9700C18—H18A0.9600
C3—H3B0.9700C18—H18B0.9600
C4—C131.545 (6)C18—H18C0.9600
C4—C51.546 (6)C19—H19A0.9600
C4—C191.549 (6)C19—H19B0.9600
C5—C61.395 (6)C19—H19C0.9600
C5—C101.399 (6)C22—C231.513 (7)
C6—C71.370 (6)C22—H22A0.9700
C6—H6A0.9300C22—H22B0.9700
C7—C81.389 (6)C23—H23A0.9700
C7—H7A0.9300C23—H23B0.9700
C8—C91.386 (6)C24—C251.509 (7)
C8—C151.506 (6)C24—H24A0.9700
C9—C101.386 (6)C24—H24B0.9700
C9—H9A0.9300C25—H25A0.9700
C10—C111.502 (6)C25—H25B0.9700
C11—C121.523 (6)
C20—N1—C21121.0 (3)C18—C14—C1110.9 (4)
C20—N1—H1A119.5C18—C14—C20106.7 (4)
C21—N1—H1A119.5C1—C14—C20108.4 (4)
C2—C1—C14112.2 (4)C18—C14—C13114.3 (4)
C2—C1—H1B109.2C1—C14—C13107.8 (3)
C14—C1—H1B109.2C20—C14—C13108.5 (3)
C2—C1—H1C109.2C8—C15—C16112.4 (4)
C14—C1—H1C109.2C8—C15—C17111.8 (4)
H1B—C1—H1C107.9C16—C15—C17111.5 (5)
C24—O2—C23109.7 (4)C8—C15—H15A106.9
C21—N2—C22121.6 (4)C16—C15—H15A106.9
C21—N2—C25125.9 (4)C17—C15—H15A106.9
C22—N2—C25112.3 (4)C15—C16—H16A109.5
C1—C2—C3111.7 (4)C15—C16—H16B109.5
C1—C2—H2A109.3H16A—C16—H16B109.5
C3—C2—H2A109.3C15—C16—H16C109.5
C1—C2—H2B109.3H16A—C16—H16C109.5
C3—C2—H2B109.3H16B—C16—H16C109.5
H2A—C2—H2B107.9C15—C17—H17A109.5
C2—C3—C4114.6 (4)C15—C17—H17B109.5
C2—C3—H3A108.6H17A—C17—H17B109.5
C4—C3—H3A108.6C15—C17—H17C109.5
C2—C3—H3B108.6H17A—C17—H17C109.5
C4—C3—H3B108.6H17B—C17—H17C109.5
H3A—C3—H3B107.6C14—C18—H18A109.5
C3—C4—C13108.2 (4)C14—C18—H18B109.5
C3—C4—C5110.2 (3)H18A—C18—H18B109.5
C13—C4—C5106.0 (3)C14—C18—H18C109.5
C3—C4—C19109.4 (4)H18A—C18—H18C109.5
C13—C4—C19115.9 (4)H18B—C18—H18C109.5
C5—C4—C19106.9 (4)C4—C19—H19A109.5
C6—C5—C10117.8 (4)C4—C19—H19B109.5
C6—C5—C4119.6 (4)H19A—C19—H19B109.5
C10—C5—C4122.5 (4)C4—C19—H19C109.5
C7—C6—C5121.9 (4)H19A—C19—H19C109.5
C7—C6—H6A119.1H19B—C19—H19C109.5
C5—C6—H6A119.1O1—C20—N1120.6 (4)
C6—C7—C8121.4 (4)O1—C20—C14122.2 (4)
C6—C7—H7A119.3N1—C20—C14117.2 (4)
C8—C7—H7A119.3N2—C21—N1116.1 (4)
C9—C8—C7116.4 (4)N2—C21—S125.2 (3)
C9—C8—C15121.7 (4)N1—C21—S118.7 (3)
C7—C8—C15121.9 (4)N2—C22—C23109.4 (4)
C10—C9—C8123.5 (4)N2—C22—H22A109.8
C10—C9—H9A118.2C23—C22—H22A109.8
C8—C9—H9A118.2N2—C22—H22B109.8
C9—C10—C5118.9 (4)C23—C22—H22B109.8
C9—C10—C11118.4 (4)H22A—C22—H22B108.2
C5—C10—C11122.6 (4)O2—C23—C22111.1 (4)
C10—C11—C12113.5 (4)O2—C23—H23A109.4
C10—C11—H11A108.9C22—C23—H23A109.4
C12—C11—H11A108.9O2—C23—H23B109.4
C10—C11—H11B108.9C22—C23—H23B109.4
C12—C11—H11B108.9H23A—C23—H23B108.0
H11A—C11—H11B107.7O2—C24—C25111.8 (4)
C11—C12—C13109.0 (3)O2—C24—H24A109.2
C11—C12—H12A109.9C25—C24—H24A109.2
C13—C12—H12A109.9O2—C24—H24B109.2
C11—C12—H12B109.9C25—C24—H24B109.2
C13—C12—H12B109.9H24A—C24—H24B107.9
H12A—C12—H12B108.3N2—C25—C24110.2 (4)
C12—C13—C4111.2 (4)N2—C25—H25A109.6
C12—C13—C14113.8 (3)C24—C25—H25A109.6
C4—C13—C14116.1 (3)N2—C25—H25B109.6
C12—C13—H13A104.8C24—C25—H25B109.6
C4—C13—H13A104.8H25A—C25—H25B108.1
C14—C13—H13A104.8
C14—C1—C2—C356.3 (6)C2—C1—C14—C1870.6 (5)
C1—C2—C3—C4−54.2 (6)C2—C1—C14—C20−172.5 (4)
C2—C3—C4—C1350.3 (5)C2—C1—C14—C13−55.2 (5)
C2—C3—C4—C5165.9 (4)C12—C13—C14—C1862.4 (5)
C2—C3—C4—C19−76.8 (5)C4—C13—C14—C18−68.6 (5)
C3—C4—C5—C638.4 (5)C12—C13—C14—C1−173.9 (4)
C13—C4—C5—C6155.3 (4)C4—C13—C14—C155.2 (5)
C19—C4—C5—C6−80.5 (5)C12—C13—C14—C20−56.6 (5)
C3—C4—C5—C10−142.6 (4)C4—C13—C14—C20172.5 (4)
C13—C4—C5—C10−25.7 (5)C9—C8—C15—C16−120.9 (5)
C19—C4—C5—C1098.6 (5)C7—C8—C15—C1659.7 (7)
C10—C5—C6—C71.5 (7)C9—C8—C15—C17112.8 (6)
C4—C5—C6—C7−179.4 (4)C7—C8—C15—C17−66.6 (6)
C5—C6—C7—C8−1.6 (7)C21—N1—C20—O1−22.3 (7)
C6—C7—C8—C90.4 (7)C21—N1—C20—C14157.0 (4)
C6—C7—C8—C15179.8 (5)C18—C14—C20—O12.7 (7)
C7—C8—C9—C100.9 (7)C1—C14—C20—O1−116.8 (5)
C15—C8—C9—C10−178.6 (4)C13—C14—C20—O1126.4 (5)
C8—C9—C10—C5−0.9 (7)C18—C14—C20—N1−176.5 (4)
C8—C9—C10—C11176.2 (4)C1—C14—C20—N164.0 (5)
C6—C5—C10—C9−0.3 (6)C13—C14—C20—N1−52.8 (5)
C4—C5—C10—C9−179.4 (4)C22—N2—C21—N1−172.8 (4)
C6—C5—C10—C11−177.3 (4)C25—N2—C21—N113.3 (6)
C4—C5—C10—C113.6 (6)C22—N2—C21—S7.1 (6)
C9—C10—C11—C12171.6 (4)C25—N2—C21—S−166.8 (4)
C5—C10—C11—C12−11.3 (6)C20—N1—C21—N266.4 (5)
C10—C11—C12—C1341.6 (5)C20—N1—C21—S−113.5 (4)
C11—C12—C13—C4−68.1 (5)C21—N2—C22—C23131.5 (4)
C11—C12—C13—C14158.6 (4)C25—N2—C22—C23−53.8 (5)
C3—C4—C13—C12175.6 (4)C24—O2—C23—C22−61.0 (5)
C5—C4—C13—C1257.4 (4)N2—C22—C23—O258.0 (6)
C19—C4—C13—C12−61.1 (5)C23—O2—C24—C2559.5 (6)
C3—C4—C13—C14−52.2 (5)C21—N2—C25—C24−133.2 (5)
C5—C4—C13—C14−170.5 (4)C22—N2—C25—C2452.4 (5)
C19—C4—C13—C1471.1 (5)O2—C24—C25—N2−54.9 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.453.171 (4)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.453.171 (4)142

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiulcer activity of dehydroabietic acid derivatives.

Authors:  H Wada; S Kodato; M Kawamori; T Morikawa; H Nakai; M Takeda; S Saito; Y Onoda; H Tamaki
Journal:  Chem Pharm Bull (Tokyo)       Date:  1985-04       Impact factor: 1.645

3.  Gastroprotective and cytotoxic effect of dehydroabietic acid derivatives.

Authors:  Beatriz Sepúlveda; Luis Astudillo; Jaime A Rodríguez; Tania Yáñez; Cristina Theoduloz; Guillermo Schmeda-Hirschmann
Journal:  Pharmacol Res       Date:  2005-08-24       Impact factor: 7.658

4.  Synthesis, structure analysis and cytotoxicity studies of novel unsymmetrically n,n'-substituted ureas from dehydroabietic Acid.

Authors:  Xiaoping Rao; Zhanqian Song; Ling He; Weihong Jia
Journal:  Chem Pharm Bull (Tokyo)       Date:  2008-11       Impact factor: 1.645

5.  Dehydro-abietic acid.

Authors:  Xiao-Ping Rao; Zhan-Qian Song; Shi-Bin Shang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.