Literature DB >> 21589362

p-Tolyl-methanaminium cyclo-hexane-1,2-diyl phosphate.

Ravikumar R Gowda1, Venkatachalam Ramkumar, Debashis Chakraborty.   

Abstract

In the title mol-ecular salt, C(8)H(12)N(+)·C(6)H(10)O(4)P(-), the cation and anion are connected by N-H⋯O hydrogen bonds. The C atoms of the cyclo-hexane ring are disordered over two sets of sites in a 0.51 (4):0.49 (4) occupancy ratio to generate two superimposed chair conformations. One of the terminal phosphate O atoms is also disordered in a 0.62 (2):0.38 (2) ratio.

Entities:  

Year:  2010        PMID: 21589362      PMCID: PMC3011592          DOI: 10.1107/S1600536810044326

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to organic phosphates, see: Gowda et al. (2010 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C8H12NC6H10O4P M = 299.30 Triclinic, a = 5.9642 (6) Å b = 9.6077 (10) Å c = 13.7070 (15) Å α = 78.326 (6)° β = 82.549 (7)° γ = 84.900 (6)° V = 761.11 (14) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 298 K 0.22 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.959, T max = 0.972 9372 measured reflections 3112 independent reflections 1549 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.177 S = 0.99 3112 reflections 217 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810044326/hb5717sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810044326/hb5717Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N+·C6H10O4PZ = 2
Mr = 299.30F(000) = 320
Triclinic, P1Dx = 1.306 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9642 (6) ÅCell parameters from 1420 reflections
b = 9.6077 (10) Åθ = 2.4–19.6°
c = 13.7070 (15) ŵ = 0.19 mm1
α = 78.326 (6)°T = 298 K
β = 82.549 (7)°Block, colourless
γ = 84.900 (6)°0.22 × 0.20 × 0.15 mm
V = 761.11 (14) Å3
Bruker APEXII CCD diffractometer3112 independent reflections
Radiation source: fine-focus sealed tube1549 reflections with I > 2σ(I)
graphiteRint = 0.070
φ and ω scansθmax = 27.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −7→6
Tmin = 0.959, Tmax = 0.972k = −12→12
9372 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0845P)2] where P = (Fo2 + 2Fc2)/3
3112 reflections(Δ/σ)max = 0.002
217 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.1252 (8)0.4020 (5)0.8217 (3)0.0796 (14)
H1A−0.00220.46460.83850.119*
H1B0.20400.36780.87960.119*
H1C0.07310.32280.79990.119*
C20.2837 (6)0.4820 (4)0.7383 (3)0.0494 (10)
C30.2204 (6)0.6086 (4)0.6806 (3)0.0473 (10)
H30.07510.64920.69430.057*
C40.3634 (6)0.6791 (4)0.6024 (3)0.0456 (10)
H40.31410.76550.56470.055*
C50.5811 (6)0.6207 (4)0.5803 (3)0.0388 (9)
C60.6472 (6)0.4933 (4)0.6386 (3)0.0533 (11)
H60.79280.45290.62570.064*
C70.5009 (7)0.4247 (4)0.7160 (3)0.0567 (11)
H70.54920.33820.75390.068*
C80.7453 (6)0.6848 (4)0.4931 (3)0.0519 (10)
H8A0.89790.66400.51180.062*
H8B0.73490.63890.43710.062*
C90.5555 (16)0.0572 (10)0.1899 (7)0.0359 (17)0.511 (5)
H90.62680.09620.23810.043*0.511 (5)
C100.3502 (14)0.1493 (9)0.1592 (7)0.0414 (17)0.511 (5)
H100.27840.11200.11030.050*0.511 (5)
C120.595 (3)0.298 (2)0.0267 (13)0.071 (4)0.511 (5)
H12A0.64950.39200.00120.085*0.511 (5)
H12B0.52330.2705−0.02550.085*0.511 (5)
C130.802 (3)0.189 (3)0.0537 (14)0.071 (4)0.511 (5)
H13A0.90340.1825−0.00680.085*0.511 (5)
H13B0.88490.22240.09970.085*0.511 (5)
C9A0.4735 (15)0.0466 (11)0.1512 (7)0.0359 (17)0.489 (5)
H9A0.36550.04700.10300.043*0.489 (5)
C10A0.4392 (14)0.1751 (10)0.1959 (7)0.0414 (17)0.489 (5)
H10A0.55310.17970.24050.050*0.489 (5)
C12A0.683 (3)0.302 (2)0.0589 (14)0.071 (4)0.489 (5)
H12C0.69780.38420.00480.085*0.489 (5)
H12D0.78960.30700.10570.085*0.489 (5)
C13A0.736 (3)0.168 (3)0.0176 (15)0.071 (4)0.489 (5)
H13C0.88700.1693−0.01830.085*0.489 (5)
H13D0.62910.1636−0.02920.085*0.489 (5)
C110.4260 (7)0.3024 (4)0.1158 (3)0.0682 (13)
H11A0.29610.36560.09680.082*
H11B0.49240.33820.16600.082*
C140.7203 (6)0.0391 (4)0.1023 (3)0.0541 (11)
H14A0.64920.00020.05490.065*
H14B0.8474−0.02520.12340.065*
N10.7087 (6)0.8402 (4)0.4595 (3)0.0508 (9)
O10.4388 (4)−0.0703 (2)0.23999 (19)0.0548 (8)
O20.2054 (4)0.1419 (3)0.2529 (2)0.0667 (9)
O30.2813 (4)−0.0294 (3)0.41168 (19)0.0606 (8)
O40.001 (9)−0.072 (10)0.3026 (15)0.089 (12)0.62 (14)
O4A0.051 (6)−0.119 (3)0.299 (2)0.054 (6)0.38 (14)
P10.22204 (15)−0.01973 (11)0.30949 (8)0.0446 (4)
H3N0.720 (6)0.884 (4)0.512 (3)0.048 (12)*
H2N0.552 (10)0.869 (5)0.440 (4)0.12 (2)*
H1N0.816 (9)0.861 (5)0.405 (4)0.089 (16)*
U11U22U33U12U13U23
C10.067 (3)0.085 (3)0.073 (3)−0.026 (2)0.009 (3)0.015 (3)
C20.044 (2)0.053 (2)0.050 (2)−0.0162 (18)0.0016 (19)−0.007 (2)
C30.031 (2)0.054 (2)0.053 (2)−0.0035 (16)0.0041 (18)−0.005 (2)
C40.037 (2)0.042 (2)0.053 (2)−0.0010 (16)0.0000 (18)−0.0012 (18)
C50.0311 (19)0.043 (2)0.043 (2)−0.0065 (15)0.0013 (17)−0.0117 (18)
C60.037 (2)0.055 (3)0.068 (3)0.0015 (18)0.000 (2)−0.015 (2)
C70.060 (3)0.041 (2)0.066 (3)0.0009 (19)−0.009 (2)−0.003 (2)
C80.042 (2)0.062 (3)0.051 (3)−0.0062 (18)0.0028 (19)−0.013 (2)
C90.032 (5)0.039 (3)0.033 (6)−0.005 (4)−0.002 (3)0.001 (4)
C100.024 (4)0.045 (4)0.049 (5)−0.005 (3)−0.002 (3)0.005 (3)
C120.068 (12)0.067 (4)0.060 (11)−0.009 (8)0.005 (6)0.022 (7)
C130.037 (9)0.082 (8)0.076 (12)−0.013 (6)0.013 (6)0.017 (9)
C9A0.032 (5)0.039 (3)0.033 (6)−0.005 (4)−0.002 (3)0.001 (4)
C10A0.024 (4)0.045 (4)0.049 (5)−0.005 (3)−0.002 (3)0.005 (3)
C12A0.068 (12)0.067 (4)0.060 (11)−0.009 (8)0.005 (6)0.022 (7)
C13A0.037 (9)0.082 (8)0.076 (12)−0.013 (6)0.013 (6)0.017 (9)
C110.072 (3)0.046 (2)0.071 (3)0.004 (2)0.012 (2)0.009 (2)
C140.043 (2)0.063 (3)0.047 (2)0.0031 (18)0.0098 (19)−0.002 (2)
N10.036 (2)0.074 (3)0.041 (2)−0.0198 (17)0.0038 (18)−0.005 (2)
O10.0565 (17)0.0393 (15)0.0598 (17)−0.0088 (12)0.0209 (13)−0.0036 (13)
O20.0441 (17)0.0680 (18)0.0662 (19)0.0195 (13)0.0250 (14)0.0087 (15)
O30.0517 (18)0.086 (2)0.0418 (17)−0.0123 (14)−0.0052 (13)−0.0030 (14)
O40.047 (11)0.17 (3)0.047 (6)−0.058 (16)−0.005 (5)0.007 (8)
O4A0.028 (8)0.068 (17)0.071 (11)−0.025 (6)0.007 (6)−0.023 (9)
P10.0272 (5)0.0603 (7)0.0411 (7)−0.0103 (4)0.0019 (4)0.0019 (5)
C1—C21.511 (5)C13—C141.55 (2)
C1—H1A0.9600C13—H13A0.9700
C1—H1B0.9600C13—H13B0.9700
C1—H1C0.9600C9A—C10A1.474 (17)
C2—C31.362 (5)C9A—O11.486 (10)
C2—C71.383 (5)C9A—C141.538 (10)
C3—C41.381 (5)C9A—H9A0.9800
C3—H30.9300C10A—C111.473 (10)
C4—C51.390 (5)C10A—O21.534 (8)
C4—H40.9300C10A—H10A0.9800
C5—C61.376 (5)C12A—C13A1.50 (4)
C5—C81.507 (5)C12A—C111.628 (19)
C6—C71.378 (5)C12A—H12C0.9700
C6—H60.9300C12A—H12D0.9700
C7—H70.9300C13A—C141.52 (2)
C8—N11.476 (5)C13A—H13C0.9700
C8—H8A0.9700C13A—H13D0.9700
C8—H8B0.9700C11—H11A0.9700
C9—O11.464 (9)C11—H11B0.9700
C9—C141.478 (9)C14—H14A0.9700
C9—C101.500 (16)C14—H14B0.9700
C9—H90.9800N1—H3N0.92 (4)
C10—O21.445 (8)N1—H2N1.00 (6)
C10—C111.555 (9)N1—H1N0.92 (5)
C10—H100.9800O1—P11.603 (2)
C12—C111.48 (2)O2—P11.590 (3)
C12—C131.58 (3)O3—P11.471 (3)
C12—H12A0.9700O4—P11.471 (17)
C12—H12B0.9700O4A—P11.50 (3)
C2—C1—H1A109.5O2—C10A—H10A112.8
C2—C1—H1B109.5C13A—C12A—C11109.5 (12)
H1A—C1—H1B109.5C13A—C12A—H12C109.8
C2—C1—H1C109.5C11—C12A—H12C109.8
H1A—C1—H1C109.5C13A—C12A—H12D109.8
H1B—C1—H1C109.5C11—C12A—H12D109.8
C3—C2—C7117.3 (3)H12C—C12A—H12D108.2
C3—C2—C1122.7 (4)C12A—C13A—C14110.0 (14)
C7—C2—C1119.9 (4)C12A—C13A—H13C109.7
C2—C3—C4122.6 (3)C14—C13A—H13C109.7
C2—C3—H3118.7C12A—C13A—H13D109.7
C4—C3—H3118.7C14—C13A—H13D109.7
C3—C4—C5119.8 (3)H13C—C13A—H13D108.2
C3—C4—H4120.1C10A—C11—C12114.1 (9)
C5—C4—H4120.1C10A—C11—C1032.9 (4)
C6—C5—C4118.0 (3)C12—C11—C10108.7 (9)
C6—C5—C8118.0 (3)C10A—C11—C12A101.9 (8)
C4—C5—C8123.9 (3)C12—C11—C12A26.9 (7)
C5—C6—C7121.0 (4)C10—C11—C12A112.1 (9)
C5—C6—H6119.5C10A—C11—H11A129.8
C7—C6—H6119.5C12—C11—H11A109.9
C6—C7—C2121.3 (4)C10—C11—H11A109.9
C6—C7—H7119.4C12A—C11—H11A128.1
C2—C7—H7119.4C10A—C11—H11B78.0
N1—C8—C5114.7 (3)C12—C11—H11B109.9
N1—C8—H8A108.6C10—C11—H11B109.9
C5—C8—H8A108.6C12A—C11—H11B84.3
N1—C8—H8B108.6H11A—C11—H11B108.3
C5—C8—H8B108.6C9—C14—C13A115.1 (10)
H8A—C8—H8B107.6C9—C14—C9A30.4 (3)
O1—C9—C14115.2 (7)C13A—C14—C9A105.0 (9)
O1—C9—C1097.5 (6)C9—C14—C13106.8 (9)
C14—C9—C10111.7 (7)C13A—C14—C1327.7 (7)
O1—C9—H9110.6C9A—C14—C13111.9 (9)
C14—C9—H9110.6C9—C14—H14A110.4
C10—C9—H9110.6C13A—C14—H14A82.9
O2—C10—C9102.6 (7)C9A—C14—H14A80.9
O2—C10—C11112.0 (6)C13—C14—H14A110.4
C9—C10—C11107.8 (6)C9—C14—H14B110.4
O2—C10—H10111.4C13A—C14—H14B125.1
C9—C10—H10111.4C9A—C14—H14B129.5
C11—C10—H10111.4C13—C14—H14B110.4
C11—C12—C13111.2 (12)H14A—C14—H14B108.6
C11—C12—H12A109.4C8—N1—H3N109 (2)
C13—C12—H12A109.4C8—N1—H2N112 (3)
C11—C12—H12B109.4H3N—N1—H2N105 (4)
C13—C12—H12B109.4C8—N1—H1N104 (3)
H12A—C12—H12B108.0H3N—N1—H1N116 (4)
C14—C13—C12111.1 (10)H2N—N1—H1N111 (4)
C14—C13—H13A109.4C9—O1—C9A31.2 (3)
C12—C13—H13A109.4C9—O1—P1107.3 (4)
C14—C13—H13B109.4C9A—O1—P1106.5 (4)
C12—C13—H13B109.4C10—O2—C10A33.4 (4)
H13A—C13—H13B108.0C10—O2—P1106.6 (4)
C10A—C9A—O1102.8 (7)C10A—O2—P1107.4 (4)
C10A—C9A—C14107.4 (7)O4—P1—O3115.7 (8)
O1—C9A—C14110.5 (7)O4—P1—O4A20 (3)
C10A—C9A—H9A111.9O3—P1—O4A115.4 (12)
O1—C9A—H9A111.9O4—P1—O2104 (3)
C14—C9A—H9A111.9O3—P1—O2110.38 (16)
C9A—C10A—C11109.4 (8)O4A—P1—O2120.3 (14)
C9A—C10A—O296.3 (6)O4—P1—O1118 (3)
C11—C10A—O2111.6 (6)O3—P1—O1109.49 (16)
C9A—C10A—H10A112.8O4A—P1—O1101.8 (11)
C11—C10A—H10A112.8O2—P1—O196.79 (13)
C7—C2—C3—C40.1 (6)C10—C9—C14—C1363.4 (10)
C1—C2—C3—C4−177.9 (4)C12A—C13A—C14—C930.4 (14)
C2—C3—C4—C50.1 (6)C12A—C13A—C14—C9A61.0 (13)
C3—C4—C5—C6−0.5 (5)C12A—C13A—C14—C13−48 (3)
C3—C4—C5—C8176.4 (3)C10A—C9A—C14—C949.1 (12)
C4—C5—C6—C70.8 (6)O1—C9A—C14—C9−62.3 (11)
C8—C5—C6—C7−176.3 (3)C10A—C9A—C14—C13A−65.2 (11)
C5—C6—C7—C2−0.7 (6)O1—C9A—C14—C13A−176.6 (8)
C3—C2—C7—C60.2 (6)C10A—C9A—C14—C13−36.9 (11)
C1—C2—C7—C6178.2 (4)O1—C9A—C14—C13−148.2 (7)
C6—C5—C8—N1−156.8 (3)C12—C13—C14—C9−55.5 (15)
C4—C5—C8—N126.3 (5)C12—C13—C14—C13A57 (3)
O1—C9—C10—O253.9 (7)C12—C13—C14—C9A−23.7 (16)
C14—C9—C10—O2174.9 (5)C14—C9—O1—C9A−70.4 (12)
O1—C9—C10—C11172.2 (5)C10—C9—O1—C9A47.9 (12)
C14—C9—C10—C11−66.8 (9)C14—C9—O1—P1−163.7 (5)
C11—C12—C13—C1454.8 (18)C10—C9—O1—P1−45.4 (7)
O1—C9A—C10A—C11−169.5 (5)C10A—C9A—O1—C9−53.4 (12)
C14—C9A—C10A—C1173.9 (9)C14—C9A—O1—C960.9 (11)
O1—C9A—C10A—O2−53.9 (7)C10A—C9A—O1—P143.0 (7)
C14—C9A—C10A—O2−170.5 (6)C14—C9A—O1—P1157.4 (5)
C11—C12A—C13A—C14−61.2 (15)C9—C10—O2—C10A54.3 (10)
C9A—C10A—C11—C12−42.3 (11)C11—C10—O2—C10A−61.0 (10)
O2—C10A—C11—C12−147.6 (8)C9—C10—O2—P1−42.3 (7)
C9A—C10A—C11—C1045.1 (9)C11—C10—O2—P1−157.6 (5)
O2—C10A—C11—C10−60.2 (8)C9A—C10A—O2—C10−46.7 (10)
C9A—C10A—C11—C12A−67.5 (10)C11—C10A—O2—C1067.1 (10)
O2—C10A—C11—C12A−172.8 (8)C9A—C10A—O2—P147.2 (7)
C13—C12—C11—C10A−21.1 (16)C11—C10A—O2—P1161.0 (5)
C13—C12—C11—C10−56.1 (15)C10—O2—P1—O4−108 (3)
C13—C12—C11—C12A46 (3)C10A—O2—P1—O4−143 (3)
O2—C10—C11—C10A67.5 (10)C10—O2—P1—O3127.1 (4)
C9—C10—C11—C10A−44.6 (9)C10A—O2—P1—O392.1 (5)
O2—C10—C11—C12173.3 (6)C10—O2—P1—O4A−94.5 (13)
C9—C10—C11—C1261.2 (10)C10A—O2—P1—O4A−129.5 (13)
O2—C10—C11—C12A144.8 (7)C10—O2—P1—O113.4 (4)
C9—C10—C11—C12A32.7 (11)C10A—O2—P1—O1−21.6 (5)
C13A—C12A—C11—C10A61.4 (15)C9—O1—P1—O4131 (3)
C13A—C12A—C11—C12−59 (3)C9A—O1—P1—O498 (3)
C13A—C12A—C11—C1028.6 (16)C9—O1—P1—O3−93.8 (4)
O1—C9—C14—C13A145.1 (7)C9A—O1—P1—O3−126.4 (4)
C10—C9—C14—C13A35.1 (11)C9—O1—P1—O4A143.6 (15)
O1—C9—C14—C9A68.6 (12)C9A—O1—P1—O4A111.0 (15)
C10—C9—C14—C9A−41.4 (11)C9—O1—P1—O220.7 (5)
O1—C9—C14—C13173.4 (7)C9A—O1—P1—O2−11.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H3N···O3i0.92 (4)1.90 (4)2.788 (5)161 (3)
N1—H2N···O3ii1.00 (6)1.86 (6)2.834 (5)164 (4)
N1—H1N···O4iii0.92 (5)1.72 (6)2.63 (2)171 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H3N⋯O3i0.92 (4)1.90 (4)2.788 (5)161 (3)
N1—H2N⋯O3ii1.00 (6)1.86 (6)2.834 (5)164 (4)
N1—H1N⋯O4iii0.92 (5)1.72 (6)2.63 (2)171 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Ravikumar R Gowda; Venkatachalam Ramkumar; Debashis Chakraborty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
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1.  1,1'-Binaphthyl-2,2'-diyl benzyl-phos-phoramidate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-16
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