Literature DB >> 21589330

Bis(μ-2,2'-{[4-(carb-oxy-meth-oxy)phen-yl]aza-nedi-yl}diacetato)-bis-[(1,10-phenanthroline)copper(II)].

Yan Zhao, Tonghen Pan, Zhitao Chen.   

Abstract

The crystal structure of the binuclear title compound, [Cu(2)(C(12)H(11)NO(7))(2)(C(12)H(8)N(2))(2)], consists of a complex mol-ecule, which lies about a crystallographic inversion centre with one half-mol-ecule in the asymmetric unit. The Cu(II) cation is bonded to three N atoms and three O atoms, in a Jahn-Teller-distorted octa-hedral geometry. The basal plane is defined by the two N atoms from the 1,10-phenathroline and two deprotonated O atoms of the polycarboxyl-ate ligand. The axial positions are occupied by the azane N atom and a bridging carboxyl-ate O atom from the second polycarboxyl-ate ligand. The complex mol-ecules are linked through O-H⋯O hydrogen bonds into extended chains running parallel to [010].

Entities:  

Year:  2010        PMID: 21589330      PMCID: PMC3011806          DOI: 10.1107/S1600536810048488

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the applications of polycarboxyl­ate ligands, see: Ghermani et al. (1994 ▶); Ruiz-Perez et al. (2000 ▶); Ye et al. (2005 ▶); Kido et al. (2003 ▶). For the features of flexible multidentate aromatic polycarboxyl­ate ligands, see: Wang et al. (2009 ▶); Pan et al. (2008 ▶); Dong et al. (2006 ▶).

Experimental

Crystal data

[Cu2(C12H11NO7)2(C12H8N2)2] M = 1049.92 Monoclinic, a = 8.7410 (17) Å b = 10.886 (2) Å c = 22.239 (4) Å β = 90.85 (3)° V = 2115.8 (7) Å3 Z = 2 Mo Kα radiation μ = 1.09 mm−1 T = 293 K 0.26 × 0.18 × 0.12 mm

Data collection

Rigaku Mercury CCD area-detector diffractometer Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 1998 ▶) T min = 0.85, T max = 1.00 14139 measured reflections 3604 independent reflections 3408 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.103 S = 1.25 3604 reflections 317 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810048488/sj5063sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810048488/sj5063Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C12H11NO7)2(C12H8N2)2]F(000) = 1076
Mr = 1049.92Dx = 1.648 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.7410 (17) Åθ = 12–18°
b = 10.886 (2) ŵ = 1.09 mm1
c = 22.239 (4) ÅT = 293 K
β = 90.85 (3)°Block, blue
V = 2115.8 (7) Å30.26 × 0.18 × 0.12 mm
Z = 2
Rigaku Mercury CCD area-detector diffractometer3604 independent reflections
Radiation source: fine-focus sealed tube3408 reflections with I > 2σ(I)
graphiteRint = 0.052
ω scansθmax = 24.7°, θmin = 3.1°
Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 1998)h = −10→10
Tmin = 0.85, Tmax = 1.00k = −12→12
14139 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.25w = 1/[σ2(Fo2) + (0.0128P)2 + 3.5126P] where P = (Fo2 + 2Fc2)/3
3604 reflections(Δ/σ)max = 0.001
317 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.05701 (5)0.10839 (4)0.04897 (2)0.03031 (15)
O5−0.0341 (3)0.0219 (2)0.11910 (12)0.0356 (7)
O70.1363 (3)−0.0478 (2)0.01526 (12)0.0326 (6)
N10.2819 (4)0.0561 (3)0.11173 (14)0.0304 (7)
N20.0092 (4)0.2758 (3)0.08106 (15)0.0319 (8)
N30.1739 (4)0.2109 (3)−0.01248 (15)0.0330 (8)
O60.3412 (3)−0.1600 (3)−0.00516 (14)0.0459 (8)
O20.1572 (4)0.7030 (3)0.24279 (14)0.0528 (9)
H20.11760.75030.21840.063*
O30.4623 (4)0.4841 (3)0.23479 (15)0.0550 (9)
O10.3190 (4)0.6653 (3)0.16736 (15)0.0605 (9)
O4−0.0057 (3)−0.1359 (3)0.18195 (14)0.0500 (8)
C10.2762 (5)0.6474 (4)0.2177 (2)0.0434 (11)
C20.3508 (6)0.5602 (4)0.2620 (2)0.0546 (13)
H2A0.39910.60730.29410.066*
H2B0.27280.50890.27980.066*
C30.4095 (5)0.3800 (4)0.2047 (2)0.0401 (10)
C40.2869 (5)0.3104 (4)0.2226 (2)0.0482 (12)
H40.23040.33470.25570.058*
C50.2476 (5)0.2047 (4)0.19176 (19)0.0432 (11)
H50.16380.15930.20430.052*
C60.3299 (4)0.1642 (4)0.14239 (17)0.0291 (9)
C70.4531 (4)0.2351 (4)0.12463 (18)0.0335 (9)
H70.51000.21100.09170.040*
C80.4928 (5)0.3423 (4)0.15567 (19)0.0377 (10)
H80.57590.38880.14320.045*
C90.2205 (4)−0.0419 (4)0.14958 (18)0.0349 (10)
H9A0.2570−0.02900.19050.042*
H9B0.2618−0.11970.13600.042*
C100.0478 (5)−0.0518 (4)0.15017 (18)0.0342 (10)
C110.3746 (4)0.0071 (4)0.06312 (18)0.0325 (9)
H11A0.4592−0.03980.08010.039*
H11B0.41680.07450.04020.039*
C120.2791 (5)−0.0758 (4)0.02112 (18)0.0327 (9)
C130.2498 (4)0.1765 (4)−0.06094 (19)0.0378 (10)
H130.23830.0963−0.07460.045*
C140.3463 (5)0.2557 (4)−0.0924 (2)0.0452 (11)
H140.39740.2285−0.12620.054*
C150.3644 (5)0.3735 (4)−0.0725 (2)0.0466 (12)
H150.43200.4259−0.09180.056*
C160.2812 (5)0.4161 (4)−0.02308 (19)0.0381 (10)
C170.1868 (4)0.3301 (4)0.00554 (18)0.0317 (9)
C180.0961 (4)0.3654 (4)0.05541 (18)0.0336 (10)
C190.0966 (5)0.4885 (4)0.0753 (2)0.0378 (10)
C200.1934 (5)0.5738 (4)0.0444 (2)0.0487 (12)
H200.19510.65540.05680.058*
C210.2807 (5)0.5397 (4)−0.0012 (2)0.0465 (12)
H210.34300.5978−0.01930.056*
C220.0007 (5)0.5157 (4)0.1236 (2)0.0452 (11)
H22−0.00440.59550.13830.054*
C23−0.0846 (5)0.4261 (4)0.1489 (2)0.0475 (12)
H23−0.14710.44450.18120.057*
C24−0.0788 (5)0.3064 (4)0.12670 (19)0.0407 (10)
H24−0.13860.24620.14450.049*
U11U22U33U12U13U23
Cu10.0304 (3)0.0260 (3)0.0346 (3)−0.0016 (2)0.0050 (2)0.0013 (2)
O50.0316 (15)0.0351 (16)0.0403 (17)0.0001 (13)0.0064 (13)0.0070 (13)
O70.0301 (16)0.0294 (15)0.0383 (16)−0.0020 (12)0.0024 (12)−0.0052 (12)
N10.0304 (18)0.0289 (18)0.0320 (18)−0.0030 (15)0.0074 (14)0.0003 (15)
N20.0305 (18)0.0294 (18)0.0358 (19)0.0004 (15)−0.0009 (15)0.0044 (15)
N30.0286 (18)0.0318 (19)0.039 (2)−0.0017 (15)0.0023 (15)0.0029 (15)
O60.0423 (18)0.0338 (17)0.062 (2)−0.0010 (14)0.0179 (15)−0.0130 (15)
O20.064 (2)0.053 (2)0.0415 (19)0.0204 (17)0.0086 (16)0.0072 (16)
O30.048 (2)0.0419 (18)0.075 (2)0.0052 (16)−0.0136 (17)−0.0256 (17)
O10.072 (2)0.060 (2)0.050 (2)0.0073 (19)0.0139 (18)0.0041 (18)
O40.0411 (18)0.0484 (19)0.061 (2)−0.0050 (15)0.0101 (15)0.0244 (16)
C10.053 (3)0.033 (2)0.044 (3)−0.003 (2)−0.002 (2)−0.007 (2)
C20.064 (3)0.044 (3)0.056 (3)0.013 (2)−0.016 (3)−0.018 (2)
C30.038 (2)0.034 (2)0.048 (3)0.002 (2)−0.011 (2)−0.008 (2)
C40.037 (2)0.059 (3)0.049 (3)−0.001 (2)0.004 (2)−0.022 (2)
C50.034 (2)0.053 (3)0.044 (3)−0.013 (2)0.0040 (19)−0.011 (2)
C60.024 (2)0.031 (2)0.032 (2)−0.0003 (17)−0.0007 (16)0.0014 (18)
C70.032 (2)0.032 (2)0.037 (2)0.0009 (18)0.0025 (18)0.0010 (18)
C80.039 (2)0.029 (2)0.045 (3)−0.0052 (19)−0.003 (2)0.004 (2)
C90.033 (2)0.037 (2)0.035 (2)−0.0031 (18)0.0012 (18)0.0068 (19)
C100.035 (2)0.035 (2)0.033 (2)−0.005 (2)0.0054 (18)0.0002 (19)
C110.025 (2)0.031 (2)0.042 (2)0.0012 (17)0.0034 (17)0.0002 (18)
C120.033 (2)0.025 (2)0.040 (2)−0.0044 (18)0.0132 (18)0.0025 (18)
C130.033 (2)0.039 (2)0.042 (2)−0.0031 (19)0.0045 (19)0.004 (2)
C140.041 (3)0.050 (3)0.045 (3)0.003 (2)0.008 (2)0.011 (2)
C150.033 (2)0.050 (3)0.056 (3)−0.006 (2)0.005 (2)0.016 (2)
C160.035 (2)0.032 (2)0.047 (3)−0.0062 (19)−0.009 (2)0.014 (2)
C170.027 (2)0.030 (2)0.038 (2)−0.0023 (17)−0.0051 (17)0.0051 (19)
C180.031 (2)0.032 (2)0.037 (2)−0.0028 (18)−0.0089 (18)0.0046 (18)
C190.036 (2)0.031 (2)0.046 (3)−0.0014 (19)−0.0115 (19)0.001 (2)
C200.057 (3)0.030 (2)0.059 (3)−0.010 (2)−0.017 (3)0.002 (2)
C210.044 (3)0.038 (3)0.058 (3)−0.013 (2)−0.006 (2)0.009 (2)
C220.045 (3)0.035 (3)0.056 (3)0.002 (2)−0.011 (2)−0.009 (2)
C230.050 (3)0.049 (3)0.044 (3)0.010 (2)−0.002 (2)−0.009 (2)
C240.038 (2)0.042 (3)0.042 (3)0.002 (2)0.003 (2)0.002 (2)
Cu1—O71.987 (3)C5—H50.9300
Cu1—O51.997 (3)C6—C71.387 (5)
Cu1—N22.003 (3)C7—C81.397 (6)
Cu1—N32.049 (3)C7—H70.9300
Cu1—O7i2.293 (3)C8—H80.9300
Cu1—N12.460 (3)C9—C101.514 (5)
O5—C101.272 (5)C9—H9A0.9700
O7—C121.290 (5)C9—H9B0.9700
O7—Cu1i2.293 (3)C11—C121.536 (5)
N1—C61.420 (5)C11—H11A0.9700
N1—C111.462 (5)C11—H11B0.9700
N1—C91.465 (5)C13—C141.401 (6)
N2—C241.325 (5)C13—H130.9300
N2—C181.366 (5)C14—C151.364 (6)
N3—C131.327 (5)C14—H140.9300
N3—C171.363 (5)C15—C161.406 (6)
O6—C121.219 (4)C15—H150.9300
O2—C11.333 (5)C16—C171.406 (5)
O2—H20.8200C16—C211.431 (6)
O3—C31.392 (5)C17—C181.426 (5)
O3—C21.422 (5)C18—C191.411 (6)
O1—C11.201 (5)C19—C221.405 (6)
O4—C101.252 (5)C19—C201.437 (6)
C1—C21.510 (6)C20—C211.331 (6)
C2—H2A0.9700C20—H200.9300
C2—H2B0.9700C21—H210.9300
C3—C41.376 (6)C22—C231.354 (6)
C3—C81.382 (6)C22—H220.9300
C4—C51.381 (6)C23—C241.395 (6)
C4—H40.9300C23—H230.9300
C5—C61.393 (5)C24—H240.9300
O7—Cu1—O592.08 (11)C3—C8—C7120.5 (4)
O7—Cu1—N2171.29 (12)C3—C8—H8119.8
O5—Cu1—N293.61 (12)C7—C8—H8119.8
O7—Cu1—N391.96 (12)N1—C9—C10115.5 (3)
O5—Cu1—N3170.40 (12)N1—C9—H9A108.4
N2—Cu1—N381.44 (13)C10—C9—H9A108.4
O7—Cu1—O7i77.11 (11)N1—C9—H9B108.4
O5—Cu1—O7i93.01 (10)C10—C9—H9B108.4
N2—Cu1—O7i109.13 (11)H9A—C9—H9B107.5
N3—Cu1—O7i96.38 (11)O4—C10—O5123.8 (4)
O7—Cu1—N174.69 (11)O4—C10—C9116.0 (4)
O5—Cu1—N176.84 (11)O5—C10—C9120.2 (3)
N2—Cu1—N1100.21 (12)N1—C11—C12111.2 (3)
N3—Cu1—N195.87 (12)N1—C11—H11A109.4
O7i—Cu1—N1149.54 (10)C12—C11—H11A109.4
C10—O5—Cu1119.6 (2)N1—C11—H11B109.4
C12—O7—Cu1120.4 (2)C12—C11—H11B109.4
C12—O7—Cu1i134.3 (2)H11A—C11—H11B108.0
Cu1—O7—Cu1i102.89 (11)O6—C12—O7124.5 (4)
C6—N1—C11119.6 (3)O6—C12—C11119.4 (4)
C6—N1—C9115.8 (3)O7—C12—C11116.1 (3)
C11—N1—C9111.7 (3)N3—C13—C14122.9 (4)
C6—N1—Cu1108.0 (2)N3—C13—H13118.5
C11—N1—Cu196.4 (2)C14—C13—H13118.5
C9—N1—Cu1101.4 (2)C15—C14—C13119.0 (4)
C24—N2—C18118.2 (4)C15—C14—H14120.5
C24—N2—Cu1128.9 (3)C13—C14—H14120.5
C18—N2—Cu1112.4 (3)C14—C15—C16120.3 (4)
C13—N3—C17117.8 (3)C14—C15—H15119.9
C13—N3—Cu1130.4 (3)C16—C15—H15119.9
C17—N3—Cu1111.3 (3)C17—C16—C15116.6 (4)
C1—O2—H2109.5C17—C16—C21117.8 (4)
C3—O3—C2117.1 (4)C15—C16—C21125.5 (4)
O1—C1—O2124.9 (4)N3—C17—C16123.2 (4)
O1—C1—C2125.0 (4)N3—C17—C18116.1 (3)
O2—C1—C2110.1 (4)C16—C17—C18120.7 (4)
O3—C2—C1112.3 (4)N2—C18—C19123.1 (4)
O3—C2—H2A109.1N2—C18—C17116.9 (4)
C1—C2—H2A109.1C19—C18—C17120.0 (4)
O3—C2—H2B109.1C22—C19—C18116.2 (4)
C1—C2—H2B109.1C22—C19—C20126.3 (4)
H2A—C2—H2B107.9C18—C19—C20117.6 (4)
C4—C3—C8119.2 (4)C21—C20—C19122.1 (4)
C4—C3—O3124.2 (4)C21—C20—H20118.9
C8—C3—O3116.5 (4)C19—C20—H20118.9
C3—C4—C5120.2 (4)C20—C21—C16121.7 (4)
C3—C4—H4119.9C20—C21—H21119.1
C5—C4—H4119.9C16—C21—H21119.1
C4—C5—C6121.9 (4)C23—C22—C19120.3 (4)
C4—C5—H5119.1C23—C22—H22119.8
C6—C5—H5119.1C19—C22—H22119.8
C7—C6—C5117.4 (4)C22—C23—C24120.1 (4)
C7—C6—N1123.3 (3)C22—C23—H23119.9
C5—C6—N1119.2 (3)C24—C23—H23119.9
C6—C7—C8120.8 (4)N2—C24—C23122.1 (4)
C6—C7—H7119.6N2—C24—H24119.0
C8—C7—H7119.6C23—C24—H24119.0
D—H···AD—HH···AD···AD—H···A
O2—H2···O4ii0.821.822.622 (4)164
Cu1—O71.987 (3)
Cu1—O51.997 (3)
Cu1—N22.003 (3)
Cu1—N32.049 (3)
Cu1—O7i2.293 (3)
Cu1—N12.460 (3)
O7—Cu1—O592.08 (11)
O7—Cu1—N2171.29 (12)
O5—Cu1—N293.61 (12)
O7—Cu1—N391.96 (12)
O5—Cu1—N3170.40 (12)
N2—Cu1—N381.44 (13)
O7—Cu1—O7i77.11 (11)
O5—Cu1—O7i93.01 (10)
N2—Cu1—O7i109.13 (11)
N3—Cu1—O7i96.38 (11)
O7—Cu1—N174.69 (11)
O5—Cu1—N176.84 (11)
N2—Cu1—N1100.21 (12)
N3—Cu1—N195.87 (12)
O7i—Cu1—N1149.54 (10)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O4ii0.821.822.622 (4)164

Symmetry code: (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Unprecedented self-catenated eight-connected network based on novel azide-bridged tetramanganese(II) clusters.

Authors:  Yan-Qin Wang; Jian-Yong Zhang; Qin-Xiang Jia; En-Qing Gao; Cai-Ming Liu
Journal:  Inorg Chem       Date:  2009-02-02       Impact factor: 5.165

3.  Silver(I) coordination polymers based on a nano-sized bent bis(3-acetylenylphenyl-(4-cyanophenyl))oxadiazole ligand: the role of ligand isomerism and the templating effect of polyatomic anions and solvent intermediates.

Authors:  Yu-Bin Dong; Hong-Xia Xu; Jian-Ping Ma; Ru-Qi Huang
Journal:  Inorg Chem       Date:  2006-04-17       Impact factor: 5.165

4.  Hydrothermal synthesis, structures, and physical properties of four new flexible multicarboxylate ligands-based compounds.

Authors:  Zhaorui Pan; Hegen Zheng; Tianwei Wang; You Song; Yizhi Li; Zijian Guo; Stuart R Batten
Journal:  Inorg Chem       Date:  2008-09-24       Impact factor: 5.165

5.  Nature of copper(II)-lanthanide(III) magnetic interactions and generation of a large magnetic moment with magnetic anisotropy of 3d-4f cyclic cylindrical tetranuclear complexes [CuIILLnIII(hfac)2]2, (H3L = 1-(2-hydroxybenzamido)-2-(2-hydroxy-3-methoxybenzylideneamino)ethane and Hhfac = hexafluoroacetylacetone, LnIII = Eu, Gd, Tb, Dy).

Authors:  Takafumi Kido; Yuichi Ikuta; Yukinari Sunatsuki; Yoshihiro Ogawa; Naohide Matsumoto; Nazzareno Re
Journal:  Inorg Chem       Date:  2003-01-27       Impact factor: 5.165

6.  Ferromagnetism in malonato-bridged copper(II) complexes. Synthesis, crystal structures, and magnetic properties of [[Cu(H2O)3][Cu(mal)2(H2O)]]n and [[Cu(H2O)4]2[Cu(mal)2(H2O)]][Cu(mal)2(H2O)2][[Cu(H2O)4][Cu(mal)2(H2O)2][(H2mal = malonic acid).

Authors:  C Ruiz-Pérez; J Sanchiz; M H Molina; F Lloret; M Julve
Journal:  Inorg Chem       Date:  2000-04-03       Impact factor: 5.165

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.