Literature DB >> 21589293

Azido-{2-[bis-(2-hy-droxy-eth-yl)amino]-ethano-lato-κN,O,O',O''}cobalt(II).

Yan-Ju Liu1, Huai-Xia Yang, Juan Yuan, Xia Wang.   

Abstract

In the title complex, [Co(C(6)H(14)NO(3))(N(3))] or [Co(teaH(2))N(3)], the Co(II) atom resides in a trigonal-bipymidal O(3)N(2) environment formed by three O atoms and one N atom from a simply deprotonated tetra-dentate triethano-lamine ligand, and one N atom from an azide ligand. The O atoms define the equatorial plane whereas both N atoms are in axial positions. The mononuclear units are linked through O-H⋯O hydrogen-bonding inter-actions between the ethanol OH groups and the ethano-late O atom of a neighbouring complex into chains running parallel to [010].

Entities:  

Year:  2010        PMID: 21589293      PMCID: PMC3011546          DOI: 10.1107/S1600536810047100

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to complexes including teaH3 ligands, see: Liu, Wang et al. (2008 ▶); Liu, Zhang et al. (2008 ▶). For CoII complexes with similar ligands, see: Malaestean et al. (2010 ▶).

Experimental

Crystal data

[Co(C6H14NO3)(N3)] M = 249.14 Monoclinic, a = 8.7752 (2) Å b = 7.9373 (1) Å c = 14.4097 (3) Å β = 107.084 (1)° V = 959.37 (3) Å3 Z = 4 Mo Kα radiation μ = 1.78 mm−1 T = 293 K 0.20 × 0.20 × 0.10 mm

Data collection

Rigaku Saturn CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.708, T max = 0.823 4004 measured reflections 2179 independent reflections 1253 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.089 S = 0.89 2179 reflections 135 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810047100/wm2427sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810047100/wm2427Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H14NO3)(N3)]F(000) = 516
Mr = 249.14Dx = 1.725 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2179 reflections
a = 8.7752 (2) Åθ = 3.4–27.5°
b = 7.9373 (1) ŵ = 1.78 mm1
c = 14.4097 (3) ÅT = 293 K
β = 107.084 (1)°Pillar, red
V = 959.37 (3) Å30.20 × 0.20 × 0.10 mm
Z = 4
Rigaku Saturn CCD diffractometer2179 independent reflections
Radiation source: fine-focus sealed tube1253 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 0.76 pixels mm-1θmax = 27.5°, θmin = 3.5°
ω scansh = −11→11
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −10→10
Tmin = 0.708, Tmax = 0.823l = −18→18
4004 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 0.89w = 1/[σ2(Fo2) + (0.0427P)2] where P = (Fo2 + 2Fc2)/3
2179 reflections(Δ/σ)max = 0.001
135 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.49520 (5)0.87496 (5)0.81512 (3)0.02597 (16)
C10.2117 (4)0.6897 (4)0.8302 (3)0.0438 (10)
H1A0.18990.62230.77160.053*
H1B0.11730.68860.85220.053*
C20.3480 (4)0.6158 (5)0.9063 (3)0.0405 (9)
H2A0.35230.66380.96900.049*
H2B0.33290.49510.90960.049*
C30.2225 (5)0.9829 (4)0.8818 (3)0.0424 (10)
H3A0.25550.92970.94510.051*
H3B0.10991.00920.86650.051*
C40.3151 (4)1.1428 (4)0.8848 (3)0.0362 (9)
H4A0.26191.21390.83010.043*
H4B0.32171.20400.94410.043*
C50.1604 (4)0.9162 (5)0.7086 (3)0.0423 (10)
H5A0.15621.03820.70490.051*
H5B0.05180.87450.69250.051*
C60.2386 (4)0.8496 (5)0.6363 (2)0.0361 (9)
H6A0.21380.73090.62490.043*
H6B0.19700.90860.57510.043*
N10.2476 (3)0.8648 (3)0.80846 (19)0.0254 (6)
N20.7314 (3)0.8811 (4)0.8330 (2)0.0405 (7)
N30.8273 (4)0.8233 (4)0.9028 (2)0.0388 (8)
N40.9226 (5)0.7663 (5)0.9675 (3)0.0703 (12)
O10.4947 (3)0.6485 (3)0.88538 (18)0.0332 (6)
O20.4718 (3)1.1008 (3)0.88087 (18)0.0344 (6)
O30.4087 (2)0.8714 (3)0.67098 (14)0.0269 (5)
H1OA0.508 (6)1.183 (7)0.863 (4)0.11 (2)*
H2OA0.525 (4)0.569 (4)0.870 (3)0.035 (12)*
U11U22U33U12U13U23
Co10.0262 (2)0.0243 (2)0.0272 (2)−0.0003 (2)0.00739 (18)0.0007 (2)
C10.040 (2)0.0305 (19)0.064 (3)−0.0069 (17)0.021 (2)0.0004 (18)
C20.050 (2)0.0339 (19)0.046 (2)0.002 (2)0.0274 (19)0.0055 (19)
C30.044 (2)0.034 (2)0.059 (2)−0.0046 (18)0.030 (2)−0.0111 (19)
C40.042 (2)0.0266 (19)0.048 (2)−0.0025 (18)0.0257 (18)−0.0068 (17)
C50.029 (2)0.054 (3)0.043 (2)0.0035 (18)0.0095 (17)−0.0026 (18)
C60.0263 (19)0.045 (2)0.0335 (19)−0.0002 (17)0.0027 (16)−0.0022 (17)
N10.0282 (14)0.0220 (13)0.0280 (14)−0.0013 (13)0.0114 (12)−0.0021 (12)
N20.0264 (16)0.0488 (18)0.0465 (19)0.0014 (16)0.0112 (15)0.0126 (17)
N30.0272 (18)0.047 (2)0.045 (2)−0.0005 (15)0.0145 (16)−0.0082 (16)
N40.046 (2)0.107 (3)0.050 (2)0.024 (2)0.001 (2)0.008 (2)
O10.0377 (15)0.0227 (15)0.0420 (15)0.0045 (12)0.0163 (12)0.0026 (12)
O20.0372 (15)0.0274 (14)0.0411 (14)−0.0091 (12)0.0152 (11)−0.0053 (12)
O30.0265 (12)0.0302 (12)0.0252 (11)0.0039 (12)0.0093 (9)0.0022 (11)
Co1—O31.991 (2)C3—H3B0.9700
Co1—N22.013 (3)C4—O21.433 (4)
Co1—O12.064 (2)C4—H4A0.9700
Co1—O22.065 (2)C4—H4B0.9700
Co1—N12.148 (3)C5—N11.475 (4)
C1—N11.478 (4)C5—C61.502 (5)
C1—C21.486 (5)C5—H5A0.9700
C1—H1A0.9700C5—H5B0.9700
C1—H1B0.9700C6—O31.439 (4)
C2—O11.430 (4)C6—H6A0.9700
C2—H2A0.9700C6—H6B0.9700
C2—H2B0.9700N2—N31.197 (4)
C3—N11.476 (4)N3—N41.147 (4)
C3—C41.501 (5)O1—H2OA0.74 (3)
C3—H3A0.9700O2—H1OA0.81 (5)
O3—Co1—N2101.32 (11)O2—C4—H4B110.0
O3—Co1—O1116.37 (10)C3—C4—H4B110.0
N2—Co1—O196.24 (12)H4A—C4—H4B108.3
O3—Co1—O2115.60 (10)N1—C5—C6111.6 (3)
N2—Co1—O299.08 (12)N1—C5—H5A109.3
O1—Co1—O2121.07 (10)C6—C5—H5A109.3
O3—Co1—N183.24 (9)N1—C5—H5B109.3
N2—Co1—N1175.37 (11)C6—C5—H5B109.3
O1—Co1—N180.87 (10)H5A—C5—H5B108.0
O2—Co1—N179.50 (10)O3—C6—C5110.8 (3)
N1—C1—C2110.6 (3)O3—C6—H6A109.5
N1—C1—H1A109.5C5—C6—H6A109.5
C2—C1—H1A109.5O3—C6—H6B109.5
N1—C1—H1B109.5C5—C6—H6B109.5
C2—C1—H1B109.5H6A—C6—H6B108.1
H1A—C1—H1B108.1C5—N1—C3112.2 (3)
O1—C2—C1110.6 (3)C5—N1—C1112.6 (3)
O1—C2—H2A109.5C3—N1—C1111.0 (3)
C1—C2—H2A109.5C5—N1—Co1105.15 (19)
O1—C2—H2B109.5C3—N1—Co1107.8 (2)
C1—C2—H2B109.5C1—N1—Co1107.6 (2)
H2A—C2—H2B108.1N3—N2—Co1122.8 (2)
N1—C3—C4111.4 (3)N4—N3—N2177.5 (4)
N1—C3—H3A109.4C2—O1—Co1113.2 (2)
C4—C3—H3A109.4C2—O1—H2OA109 (3)
N1—C3—H3B109.4Co1—O1—H2OA123 (3)
C4—C3—H3B109.4C4—O2—Co1116.5 (2)
H3A—C3—H3B108.0C4—O2—H1OA107 (4)
O2—C4—C3108.7 (3)Co1—O2—H1OA117 (4)
O2—C4—H4A110.0C6—O3—Co1113.77 (18)
C3—C4—H4A110.0
D—H···AD—HH···AD···AD—H···A
O2—H1OA···O3i0.80 (6)1.80 (6)2.595 (3)176.90
O1—H2OA···O3ii0.74 (3)1.83 (3)2.573 (3)177.70
Table 1

Selected bond lengths (Å)

Co1—O31.991 (2)
Co1—N22.013 (3)
Co1—O12.064 (2)
Co1—O22.065 (2)
Co1—N12.148 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1OA⋯O3i0.80 (6)1.80 (6)2.595 (3)176.90
O1—H2OA⋯O3ii0.74 (3)1.83 (3)2.573 (3)177.70

Symmetry codes: (i) ; (ii) .

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