Literature DB >> 21589256

Bis[4-chloro-N'-(2-pyridyl-methyl-idene)benzohydrazidato]cobalt(III) nitrate sesquihydrate.

Dayu Wu1, Yan Zhao, Hui Ye, Genhua Wu.   

Abstract

In the title compound, [Co(C(13)H(9)ClN(3)O)(2)]NO(3)·1.5H(2)O, the central Co(3+) atom in the cation is coordinated by four N and two O atoms from the two tridentate ligands in a distorted octa-hedral fashion. In the crystal, the cobalt complex cations are linked to the half-occupied and the fully occupied water mol-ecules, and the nitrate anion via classical inter-molecular O-H⋯O and O-H⋯N hydrogen bonds and weak C-H⋯O contacts.

Entities:  

Year:  2010        PMID: 21589256      PMCID: PMC3011380          DOI: 10.1107/S160053681004612X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of bis­{4-chloro-N′-[phen­yl(2-pyrid­yl)methyl­idene]benzohydrazidato}cobalt(III) nitrate methanol disolvate, see: Wu et al. (2010 ▶). For a related mononuclear cobalt compound, see: Herchel & Boca (2005 ▶) and for a bimetallic dicobalt(II) complex, see: Gavrilova et al. (2002 ▶). For related structures containing hydrazide groups, see: Liu et al. (2006 ▶); Cao et al. (2009 ▶).

Experimental

Crystal data

[Co(C13H9ClN3O)2]NO3·1.5H2O M = 665.33 Monoclinic, a = 14.198 (10) Å b = 10.876 (7) Å c = 18.553 (13) Å β = 94.196 (12)° V = 2857 (3) Å3 Z = 4 Mo Kα radiation μ = 0.84 mm−1 T = 293 K 0.32 × 0.22 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: ψ scan (SADABS; Bruker, 1997 ▶) T min = 0.765, T max = 0.862 13702 measured reflections 5019 independent reflections 3527 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.163 S = 1.05 5019 reflections 388 parameters 5 restraints H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004612X/si2290sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004612X/si2290Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C13H9ClN3O)2]NO3·1.5H2OF(000) = 1356
Mr = 665.33Dx = 1.547 Mg m3
Monoclinic, P2/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yacCell parameters from 5210 reflections
a = 14.198 (10) Åθ = 2.5–50.3°
b = 10.876 (7) ŵ = 0.84 mm1
c = 18.553 (13) ÅT = 293 K
β = 94.196 (12)°Block, dark-red
V = 2857 (3) Å30.32 × 0.22 × 0.18 mm
Z = 4
Bruker SMART CCD area-detector diffractometer5019 independent reflections
Radiation source: fine-focus sealed tube3527 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: ψ scan (SADABS; Bruker, 1997)h = −16→16
Tmin = 0.765, Tmax = 0.862k = −12→10
13702 measured reflectionsl = −22→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0924P)2 + 0.4119P] where P = (Fo2 + 2Fc2)/3
5019 reflections(Δ/σ)max < 0.001
388 parametersΔρmax = 0.70 e Å3
5 restraintsΔρmin = −0.45 e Å3
Experimental. The water oxygen atom O7 showed an approximate double value of the isotropic displacement parameter of water oxygen O6 (0.347 vs. 0.158). Therefore we set the site occupancy of O7 to 1/2 and refined the solvent water and the nitrate anion with anisotropic displacement parameters.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.62443 (4)0.72407 (5)0.45042 (3)0.0370 (2)
C10.6243 (3)0.7598 (4)0.2917 (2)0.0483 (11)
H1A0.62350.84440.29890.058*
C20.6240 (3)0.7152 (4)0.2223 (2)0.0570 (12)
H2A0.62310.76970.18360.068*
C30.6250 (3)0.5917 (5)0.2099 (2)0.0564 (12)
H3A0.62520.56100.16310.068*
C40.6257 (3)0.5138 (4)0.2681 (2)0.0512 (11)
H4A0.62680.42920.26100.061*
C50.6249 (3)0.5610 (4)0.3374 (2)0.0418 (9)
C60.6225 (3)0.4894 (4)0.4023 (2)0.0415 (10)
H6A0.62200.40390.40270.050*
C70.6191 (3)0.6008 (4)0.5726 (2)0.0390 (9)
C80.6173 (3)0.5700 (4)0.6503 (2)0.0384 (9)
C90.6228 (3)0.4484 (4)0.6718 (2)0.0490 (11)
H9A0.62660.38700.63730.059*
C100.6229 (3)0.4173 (4)0.7431 (2)0.0526 (11)
H10A0.62710.33520.75700.063*
C110.6168 (3)0.5066 (4)0.7938 (2)0.0479 (11)
C120.6086 (3)0.6291 (4)0.7744 (2)0.0579 (12)
H12A0.60290.68950.80930.069*
C130.6090 (3)0.6601 (4)0.7025 (2)0.0530 (11)
H13A0.60360.74210.68870.064*
C140.8270 (3)0.6589 (4)0.4748 (2)0.0476 (10)
H14A0.80980.57660.47750.057*
C150.9209 (3)0.6903 (5)0.4849 (2)0.0561 (12)
H15A0.96590.62950.49520.067*
C160.9482 (3)0.8086 (5)0.4799 (3)0.0600 (12)
H16A1.01180.82960.48600.072*
C170.8803 (3)0.8982 (4)0.4656 (2)0.0565 (12)
H17A0.89770.98030.46210.068*
C180.7860 (3)0.8647 (4)0.4565 (2)0.0440 (10)
C190.7070 (3)0.9470 (4)0.4422 (2)0.0483 (10)
H19A0.71401.03110.43550.058*
C200.4752 (3)0.8648 (4)0.4255 (2)0.0424 (10)
C210.3756 (3)0.9004 (4)0.4079 (2)0.0441 (10)
C220.3531 (4)1.0132 (4)0.3757 (3)0.0670 (14)
H22A0.40101.06880.36770.080*
C230.2620 (4)1.0433 (5)0.3557 (3)0.0745 (16)
H23A0.24801.11850.33350.089*
C240.1905 (3)0.9620 (5)0.3684 (3)0.0631 (13)
C250.2097 (3)0.8526 (4)0.4026 (3)0.0611 (13)
H25A0.16080.79970.41260.073*
C260.3019 (3)0.8217 (4)0.4219 (2)0.0520 (11)
H26A0.31520.74690.44480.062*
N20.6211 (2)0.5548 (3)0.45984 (16)0.0360 (7)
N30.6194 (2)0.5074 (3)0.52737 (16)0.0398 (8)
N40.7595 (2)0.7441 (3)0.46134 (16)0.0396 (8)
N50.6262 (2)0.8936 (3)0.43946 (16)0.0397 (8)
N60.5418 (2)0.9507 (3)0.42431 (19)0.0464 (9)
N10.6257 (2)0.6854 (3)0.34889 (17)0.0398 (8)
O20.4919 (2)0.7504 (2)0.43905 (15)0.0430 (7)
O10.6200 (2)0.7154 (2)0.55317 (14)0.0421 (7)
Cl20.07430 (10)0.99916 (16)0.34145 (10)0.0988 (6)
Cl10.61734 (11)0.46595 (13)0.88446 (6)0.0751 (4)
N70.6640 (3)0.2922 (4)0.0902 (3)0.0703 (12)
O30.6977 (6)0.3291 (6)0.1463 (4)0.199 (3)
O40.6469 (4)0.3662 (5)0.0448 (3)0.134 (2)
O50.6521 (4)0.1837 (4)0.0843 (3)0.1204 (17)
O60.6525 (4)0.0520 (6)0.2242 (4)0.216 (4)
H610.65560.06300.17910.259*
H620.65620.11310.25290.259*
O70.5975 (6)0.1822 (9)0.3446 (9)0.193 (7)0.50
H720.59560.13600.38140.231*0.50
H710.54650.17450.31800.231*0.50
U11U22U33U12U13U23
Co10.0475 (4)0.0276 (3)0.0361 (3)−0.0045 (2)0.0047 (2)0.0015 (2)
C10.056 (3)0.046 (3)0.043 (2)0.000 (2)0.005 (2)0.010 (2)
C20.069 (3)0.060 (3)0.041 (3)−0.002 (2)0.000 (2)0.012 (2)
C30.069 (3)0.064 (3)0.036 (2)−0.001 (2)0.002 (2)−0.003 (2)
C40.061 (3)0.051 (3)0.041 (2)−0.002 (2)0.005 (2)−0.008 (2)
C50.046 (2)0.038 (2)0.041 (2)−0.0017 (18)0.0039 (18)0.0005 (18)
C60.050 (3)0.028 (2)0.046 (2)−0.0014 (17)0.0017 (19)−0.0037 (18)
C70.037 (2)0.041 (2)0.040 (2)−0.0072 (17)0.0034 (17)0.0026 (18)
C80.041 (2)0.036 (2)0.037 (2)−0.0077 (17)−0.0002 (17)−0.0015 (17)
C90.072 (3)0.038 (2)0.037 (2)0.003 (2)0.005 (2)−0.0026 (19)
C100.080 (3)0.037 (2)0.042 (2)0.006 (2)0.008 (2)0.0050 (19)
C110.055 (3)0.051 (3)0.037 (2)−0.003 (2)−0.0004 (19)0.004 (2)
C120.081 (3)0.050 (3)0.044 (3)−0.001 (2)0.010 (2)−0.010 (2)
C130.074 (3)0.042 (3)0.043 (3)−0.005 (2)0.006 (2)−0.001 (2)
C140.058 (3)0.041 (3)0.043 (2)0.002 (2)0.003 (2)0.0096 (19)
C150.048 (3)0.065 (3)0.055 (3)0.000 (2)−0.001 (2)0.008 (2)
C160.049 (3)0.068 (3)0.062 (3)−0.009 (2)−0.002 (2)0.001 (3)
C170.060 (3)0.051 (3)0.059 (3)−0.020 (2)0.004 (2)−0.005 (2)
C180.056 (3)0.036 (2)0.040 (2)−0.009 (2)0.0058 (19)−0.0025 (18)
C190.063 (3)0.034 (2)0.049 (3)−0.010 (2)0.008 (2)−0.0012 (19)
C200.055 (3)0.031 (2)0.042 (2)0.0000 (19)0.0076 (19)0.0006 (18)
C210.051 (3)0.031 (2)0.051 (3)−0.0004 (18)0.0085 (19)−0.0012 (19)
C220.056 (3)0.048 (3)0.097 (4)0.002 (2)0.001 (3)0.017 (3)
C230.060 (3)0.059 (3)0.103 (4)0.009 (3)−0.001 (3)0.027 (3)
C240.051 (3)0.062 (3)0.075 (3)0.009 (2)0.002 (2)0.000 (3)
C250.053 (3)0.050 (3)0.082 (4)−0.007 (2)0.016 (2)−0.005 (3)
C260.058 (3)0.038 (2)0.061 (3)0.007 (2)0.012 (2)−0.001 (2)
N20.0427 (19)0.0295 (17)0.0358 (18)−0.0042 (14)0.0018 (14)0.0020 (14)
N30.054 (2)0.0321 (18)0.0338 (18)−0.0053 (15)0.0054 (15)0.0006 (14)
N40.052 (2)0.0350 (19)0.0312 (17)−0.0071 (15)−0.0004 (15)0.0032 (14)
N50.047 (2)0.0315 (18)0.0403 (19)−0.0031 (16)0.0040 (15)0.0002 (14)
N60.054 (2)0.0316 (19)0.054 (2)−0.0037 (17)0.0091 (17)0.0000 (16)
N10.045 (2)0.0368 (19)0.0374 (18)−0.0040 (15)0.0019 (14)0.0046 (15)
O20.0511 (17)0.0291 (15)0.0494 (17)−0.0049 (12)0.0083 (13)0.0005 (12)
O10.0580 (18)0.0281 (15)0.0407 (15)−0.0045 (12)0.0066 (13)−0.0002 (12)
Cl20.0549 (9)0.1056 (13)0.1344 (15)0.0108 (8)−0.0029 (9)0.0189 (10)
Cl10.1181 (12)0.0727 (9)0.0344 (6)0.0010 (8)0.0045 (6)0.0036 (6)
N70.097 (4)0.053 (3)0.058 (3)−0.008 (2)−0.013 (2)−0.015 (2)
O30.321 (10)0.144 (6)0.126 (5)−0.035 (6)−0.016 (6)−0.042 (4)
O40.151 (5)0.097 (4)0.147 (5)−0.023 (3)−0.030 (3)0.062 (4)
O50.156 (5)0.063 (3)0.136 (4)−0.002 (3)−0.031 (3)−0.022 (3)
O60.194 (6)0.222 (8)0.216 (7)−0.131 (6)−0.096 (5)0.133 (6)
O70.077 (6)0.087 (7)0.41 (2)−0.015 (5)−0.043 (9)0.138 (10)
Co1—N21.850 (3)C14—H14A0.9300
Co1—N51.855 (3)C15—C161.349 (7)
Co1—O21.899 (3)C15—H15A0.9300
Co1—O11.914 (3)C16—C171.384 (7)
Co1—N41.926 (4)C16—H16A0.9300
Co1—N11.931 (3)C17—C181.385 (6)
C1—N11.334 (5)C17—H17A0.9300
C1—C21.375 (6)C18—N41.369 (5)
C1—H1A0.9300C18—C191.444 (6)
C2—C31.363 (6)C19—N51.283 (5)
C2—H2A0.9300C19—H19A0.9300
C3—C41.372 (6)C20—O21.287 (4)
C3—H3A0.9300C20—N61.331 (5)
C4—C51.385 (6)C20—C211.479 (6)
C4—H4A0.9300C21—C221.392 (6)
C5—N11.369 (5)C21—C261.392 (6)
C5—C61.438 (6)C22—C231.359 (7)
C6—N21.284 (5)C22—H22A0.9300
C6—H6A0.9300C23—C241.380 (7)
C7—O11.297 (5)C23—H23A0.9300
C7—N31.318 (5)C24—C251.367 (7)
C7—C81.483 (5)C24—Cl21.736 (5)
C8—C91.381 (6)C25—C261.374 (6)
C8—C131.388 (6)C25—H25A0.9300
C9—C101.366 (6)C26—H26A0.9300
C9—H9A0.9300N2—N31.357 (4)
C10—C111.359 (6)N5—N61.362 (5)
C10—H10A0.9300N7—O41.176 (6)
C11—C121.383 (6)N7—O31.185 (7)
C11—Cl11.738 (4)N7—O51.197 (6)
C12—C131.376 (6)O6—H610.8498
C12—H12A0.9300O6—H620.8501
C13—H13A0.9300O7—H720.8501
C14—N41.344 (5)O7—H710.8499
C14—C151.376 (6)
N2—Co1—N5178.95 (14)C16—C15—C14120.5 (5)
N2—Co1—O297.39 (12)C16—C15—H15A119.7
N5—Co1—O281.92 (13)C14—C15—H15A119.7
N2—Co1—O181.59 (12)C15—C16—C17119.1 (4)
N5—Co1—O199.20 (12)C15—C16—H16A120.5
O2—Co1—O190.78 (12)C17—C16—H16A120.5
N2—Co1—N497.76 (13)C16—C17—C18119.4 (4)
N5—Co1—N482.94 (14)C16—C17—H17A120.3
O2—Co1—N4164.81 (13)C18—C17—H17A120.3
O1—Co1—N490.33 (13)N4—C18—C17120.8 (4)
N2—Co1—N182.97 (13)N4—C18—C19113.1 (4)
N5—Co1—N196.22 (13)C17—C18—C19126.1 (4)
O2—Co1—N190.24 (13)N5—C19—C18114.0 (4)
O1—Co1—N1164.53 (13)N5—C19—H19A123.0
N4—Co1—N192.71 (13)C18—C19—H19A123.0
N1—C1—C2122.0 (4)O2—C20—N6124.1 (4)
N1—C1—H1A119.0O2—C20—C21117.1 (3)
C2—C1—H1A119.0N6—C20—C21118.7 (4)
C3—C2—C1120.4 (4)C22—C21—C26118.1 (4)
C3—C2—H2A119.8C22—C21—C20120.8 (4)
C1—C2—H2A119.8C26—C21—C20121.1 (4)
C2—C3—C4118.4 (4)C23—C22—C21120.9 (5)
C2—C3—H3A120.8C23—C22—H22A119.5
C4—C3—H3A120.8C21—C22—H22A119.5
C3—C4—C5120.1 (4)C22—C23—C24119.8 (5)
C3—C4—H4A119.9C22—C23—H23A120.1
C5—C4—H4A119.9C24—C23—H23A120.1
N1—C5—C4120.7 (4)C25—C24—C23120.9 (5)
N1—C5—C6113.9 (3)C25—C24—Cl2119.3 (4)
C4—C5—C6125.4 (4)C23—C24—Cl2119.8 (4)
N2—C6—C5113.5 (4)C24—C25—C26119.2 (4)
N2—C6—H6A123.2C24—C25—H25A120.4
C5—C6—H6A123.2C26—C25—H25A120.4
O1—C7—N3124.3 (3)C25—C26—C21121.1 (4)
O1—C7—C8119.3 (3)C25—C26—H26A119.5
N3—C7—C8116.5 (3)C21—C26—H26A119.5
C9—C8—C13118.7 (4)C6—N2—N3124.0 (3)
C9—C8—C7119.5 (4)C6—N2—Co1118.1 (3)
C13—C8—C7121.8 (4)N3—N2—Co1117.9 (2)
C10—C9—C8120.8 (4)C7—N3—N2107.2 (3)
C10—C9—H9A119.6C14—N4—C18118.5 (4)
C8—C9—H9A119.6C14—N4—Co1129.2 (3)
C11—C10—C9119.9 (4)C18—N4—Co1112.2 (3)
C11—C10—H10A120.1C19—N5—N6124.9 (4)
C9—C10—H10A120.1C19—N5—Co1117.7 (3)
C10—C11—C12121.1 (4)N6—N5—Co1117.2 (2)
C10—C11—Cl1119.5 (3)C20—N6—N5107.0 (3)
C12—C11—Cl1119.4 (3)C1—N1—C5118.4 (4)
C13—C12—C11118.8 (4)C1—N1—Co1130.1 (3)
C13—C12—H12A120.6C5—N1—Co1111.5 (2)
C11—C12—H12A120.6C20—O2—Co1109.6 (2)
C12—C13—C8120.6 (4)C7—O1—Co1109.0 (2)
C12—C13—H13A119.7O4—N7—O3116.5 (6)
C8—C13—H13A119.7O4—N7—O5126.2 (5)
N4—C14—C15121.7 (4)O3—N7—O5117.3 (6)
N4—C14—H14A119.2H61—O6—H62120.0
C15—C14—H14A119.2H72—O7—H71109.5
D—H···AD—HH···AD···AD—H···A
O6—H61···O50.852.192.964 (8)151
O6—H62···O70.852.092.804 (16)141
O7—H72···N6i0.852.323.053 (12)145
C14—H14A···O4ii0.932.413.229 (7)146
C17—H17A···O5iii0.932.463.263 (7)145
Table 1

Selected bond lengths (Å)

Co1—N21.850 (3)
Co1—N51.855 (3)
Co1—O21.899 (3)
Co1—O11.914 (3)
Co1—N41.926 (4)
Co1—N11.931 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H61⋯O50.852.192.964 (8)151
O6—H62⋯O70.852.092.804 (16)141
O7—H72⋯N6i0.852.323.053 (12)145
C14—H14A⋯O4ii0.932.413.229 (7)146
C17—H17A⋯O5iii0.932.463.263 (7)145

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Magnetic ordering in a mononuclear cobalt(II) complex containing a Schiff-base pentadentate ligand.

Authors:  Radovan Herchel; Roman Boca
Journal:  Dalton Trans       Date:  2005-03-08       Impact factor: 4.390

3.  Bimetallic reactivity. One-site addition two-metal oxidation reaction of dioxygen with a bimetallic dicobalt(II) complex bearing five- and six-coordinate sites.

Authors:  Anna L Gavrilova; C Jin Qin; Roger D Sommer; Arnold L Rheingold; B Bosnich
Journal:  J Am Chem Soc       Date:  2002-02-27       Impact factor: 15.419

4.  (E)-3-Bromo-N'-(4-hydr-oxy-3-nitro-benzyl-idene)benzohydrazide.

Authors:  Guo-Biao Cao; Xiao-Ya Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-01

5.  Bis{4-chloro-N'-[phen-yl(2-pyrid-yl)methyl-idene]benzohydrazidato-κN',O}cobalt(III) nitrate methanol disolvate.

Authors:  Genhua Wu; Hui Ye; Dayu Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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