Literature DB >> 21589255

Tetra-aqua-diazido-cobalt(II) 3,3'-dicarb-oxy-l-ato-1,1'-ethyl-enedipyridinium.

Yan-Qing Wen1, Chun-Yan Tian, En-Qing Gao.   

Abstract

The asymmetric unit of the title compound, [Co(N(3))(2)(H(2)O)(4)]·C(14)n class="Species">H(12)N(2)O(4), comprises half of the cobalt(II) complex mol-ecule and a half of the 3,3'-dicarboxyl-ato-1,1'-ethyl-enedipyridinium mol-ecule. The Co(II) atom is located on an inversion centre and hence the complex mol-ecule adopts a centrosymmetric trans-octa-hedral geometry. The zwitterionic organic mol-ecule is also centrosymmetric with the centre of the C-C bond of the ethyl-ene moiety coinciding with an inversion centre. The adduct of metal complex and organic mol-ecule is associated into a three-dimenional network through O-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21589255      PMCID: PMC3011402          DOI: 10.1107/S1600536810046143

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to hydrogen bonds, see: Braga & Grepioni (2000 ▶); Fabbiani et al. (2010 ▶); Salitros et al. (2010 ▶); Schultheis et al. (2010 ▶). For the synthesis of the ligand, see: Loeb et al. (2006 ▶). For n class="Chemical">hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter (1990 ▶).

Experimental

Crystal data

[Co(N3)2(H2O)4]·C14n class="Species">H12N2O4 M = 487.31 Triclinic, a = 7.4309 (6) Å b = 7.7507 (7) Å c = 8.5582 (7) Å α = 95.463 (2)° β = 90.586 (2)° γ = 95.011 (2)° V = 488.71 (7) Å3 Z = 1 Mo Kα radiation μ = 0.94 mm−1 T = 296 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.799, T max = 0.872 6091 measured reflections 1907 independent reflections 1889 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.074 S = 1.12 1907 reflections 154 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810046143/kp2284sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046143/kp2284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(N3)2(H2O)4]·C14H12N2O4Z = 1
Mr = 487.31F(000) = 251
Triclinic, P1Dx = 1.656 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4309 (6) ÅCell parameters from 15377 reflections
b = 7.7507 (7) Åθ = 3.4–27.5°
c = 8.5582 (7) ŵ = 0.94 mm1
α = 95.463 (2)°T = 296 K
β = 90.586 (2)°Block, red
γ = 95.011 (2)°0.25 × 0.20 × 0.15 mm
V = 488.71 (7) Å3
Bruker APEXII CCD area-detector diffractometer1907 independent reflections
Radiation source: fine-focus sealed tube1889 reflections with I > 2σ(I)
graphiteRint = 0.015
phi and ω scansθmax = 26.1°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.799, Tmax = 0.872k = −9→8
6091 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0411P)2 + 0.2239P] where P = (Fo2 + 2Fc2)/3
1907 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.28 e Å3
9 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.50000.02282 (12)
C10.3729 (2)0.5896 (2)0.3420 (2)0.0283 (3)
C20.5025 (2)0.4708 (2)0.26023 (19)0.0258 (3)
C30.6822 (2)0.5278 (2)0.2423 (2)0.0335 (4)
H3A0.72340.64240.27510.040*
C40.4437 (2)0.3011 (2)0.20731 (19)0.0255 (3)
H4A0.32280.26130.21530.031*
C50.8009 (2)0.4148 (3)0.1756 (3)0.0392 (4)
H5A0.92150.45300.16250.047*
C60.7382 (2)0.2466 (2)0.1293 (2)0.0339 (4)
H6A0.81730.16850.08750.041*
C70.5003 (2)0.0111 (2)0.08913 (19)0.0286 (3)
H7A0.3795−0.01770.12650.034*
H7B0.5803−0.06670.13030.034*
N10.56206 (18)0.19334 (17)0.14405 (16)0.0257 (3)
N20.0817 (2)−0.0222 (2)0.26583 (18)0.0399 (4)
N3−0.0146 (2)−0.1006 (2)0.16704 (17)0.0320 (3)
N4−0.1073 (3)−0.1740 (2)0.0672 (2)0.0461 (4)
O10.43867 (18)0.73681 (16)0.39597 (19)0.0435 (4)
O20.21281 (17)0.52889 (16)0.35044 (18)0.0405 (3)
O30.27781 (16)−0.00456 (16)0.56790 (15)0.0319 (3)
H3B0.347 (3)0.086 (2)0.569 (3)0.048*
H3C0.321 (3)−0.082 (2)0.508 (3)0.048*
O40.02796 (18)0.26995 (16)0.50991 (18)0.0379 (3)
H4B0.090 (3)0.323 (3)0.449 (3)0.057*
H4C−0.053 (3)0.334 (3)0.547 (3)0.057*
U11U22U33U12U13U23
Co10.02008 (17)0.02004 (17)0.02747 (17)−0.00003 (11)0.00302 (11)−0.00082 (11)
C10.0273 (8)0.0202 (7)0.0363 (8)0.0007 (6)0.0062 (7)−0.0031 (6)
C20.0247 (8)0.0210 (7)0.0305 (8)0.0009 (6)0.0035 (6)−0.0024 (6)
C30.0282 (9)0.0247 (8)0.0445 (10)−0.0047 (7)0.0040 (7)−0.0067 (7)
C40.0220 (7)0.0230 (8)0.0301 (8)0.0002 (6)0.0040 (6)−0.0026 (6)
C50.0231 (8)0.0348 (9)0.0565 (12)−0.0035 (7)0.0081 (8)−0.0077 (8)
C60.0247 (8)0.0311 (9)0.0447 (10)0.0045 (7)0.0068 (7)−0.0056 (7)
C70.0331 (8)0.0179 (7)0.0336 (9)0.0000 (6)0.0054 (7)−0.0030 (6)
N10.0256 (7)0.0203 (6)0.0297 (7)0.0006 (5)0.0035 (5)−0.0043 (5)
N20.0335 (8)0.0555 (10)0.0297 (8)−0.0006 (7)0.0064 (6)0.0028 (7)
N30.0314 (8)0.0343 (8)0.0318 (8)0.0069 (6)0.0117 (7)0.0059 (6)
N40.0475 (10)0.0485 (10)0.0398 (9)−0.0053 (8)0.0032 (8)−0.0011 (8)
O10.0330 (7)0.0226 (6)0.0701 (10)−0.0026 (5)0.0105 (6)−0.0159 (6)
O20.0282 (6)0.0241 (6)0.0665 (9)−0.0017 (5)0.0160 (6)−0.0082 (6)
O30.0230 (6)0.0274 (6)0.0434 (7)0.0016 (5)0.0014 (5)−0.0067 (5)
O40.0356 (7)0.0210 (6)0.0575 (8)0.0026 (5)0.0178 (6)0.0028 (5)
Co1—O42.0780 (12)C5—C61.366 (3)
Co1—O4i2.0780 (12)C5—H5A0.9300
Co1—N22.0958 (15)C6—N11.349 (2)
Co1—N2i2.0958 (15)C6—H6A0.9300
Co1—O3i2.1431 (12)C7—N11.478 (2)
Co1—O32.1431 (12)C7—C7ii1.519 (3)
C1—O11.245 (2)C7—H7A0.9700
C1—O21.246 (2)C7—H7B0.9700
C1—C21.521 (2)N2—N31.188 (2)
C2—C41.381 (2)N3—N41.164 (2)
C2—C31.384 (2)O3—H3B0.836 (15)
C3—C51.386 (3)O3—H3C0.839 (15)
C3—H3A0.9300O4—H4B0.813 (16)
C4—N11.348 (2)O4—H4C0.856 (16)
C4—H4A0.9300
O4—Co1—O4i180.0N1—C4—H4A120.1
O4—Co1—N291.41 (6)C2—C4—H4A120.1
O4i—Co1—N288.59 (6)C6—C5—C3119.02 (16)
O4—Co1—N2i88.59 (6)C6—C5—H5A120.5
O4i—Co1—N2i91.41 (6)C3—C5—H5A120.5
N2—Co1—N2i180.0N1—C6—C5120.23 (16)
O4—Co1—O3i88.83 (5)N1—C6—H6A119.9
O4i—Co1—O3i91.17 (5)C5—C6—H6A119.9
N2—Co1—O3i92.17 (6)N1—C7—C7ii109.09 (16)
N2i—Co1—O3i87.83 (6)N1—C7—H7A109.9
O4—Co1—O391.17 (5)C7ii—C7—H7A109.9
O4i—Co1—O388.83 (5)N1—C7—H7B109.9
N2—Co1—O387.83 (6)C7ii—C7—H7B109.9
N2i—Co1—O392.17 (6)H7A—C7—H7B108.3
O3i—Co1—O3180.0C4—N1—C6121.82 (14)
O1—C1—O2126.73 (15)C4—N1—C7120.05 (13)
O1—C1—C2116.50 (14)C6—N1—C7118.13 (14)
O2—C1—C2116.75 (14)N3—N2—Co1120.05 (12)
C4—C2—C3118.77 (14)N4—N3—N2178.01 (19)
C4—C2—C1120.22 (14)Co1—O3—H3B119.4 (17)
C3—C2—C1120.97 (14)Co1—O3—H3C107.1 (17)
C2—C3—C5120.26 (16)H3B—O3—H3C108.0 (19)
C2—C3—H3A119.9Co1—O4—H4B122.9 (18)
C5—C3—H3A119.9Co1—O4—H4C123.1 (17)
N1—C4—C2119.85 (14)H4B—O4—H4C109 (2)
O1—C1—C2—C4175.22 (17)C2—C4—N1—C6−0.5 (3)
O2—C1—C2—C4−3.6 (2)C2—C4—N1—C7179.21 (14)
O1—C1—C2—C3−2.5 (3)C5—C6—N1—C4−1.6 (3)
O2—C1—C2—C3178.67 (17)C5—C6—N1—C7178.70 (17)
C4—C2—C3—C5−1.5 (3)C7ii—C7—N1—C4108.4 (2)
C1—C2—C3—C5176.28 (18)C7ii—C7—N1—C6−71.9 (2)
C3—C2—C4—N12.0 (2)O4—Co1—N2—N3−122.40 (16)
C1—C2—C4—N1−175.75 (15)O4i—Co1—N2—N357.60 (16)
C2—C3—C5—C6−0.6 (3)O3i—Co1—N2—N3−33.51 (16)
C3—C5—C6—N12.1 (3)O3—Co1—N2—N3146.49 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3B···O1iii0.84 (2)2.01 (2)2.8180 (18)163 (2)
O3—H3C···O1iv0.84 (2)1.91 (2)2.7395 (17)172 (2)
O4—H4C···O2v0.86 (2)1.84 (2)2.6901 (18)173 (3)
O4—H4B···O20.81 (2)2.03 (2)2.8028 (18)159 (2)
Table 1

Selected bond lengths (Å)

Co1—O42.0780 (12)
Co1—N22.0958 (15)
Co1—O32.1431 (12)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3B⋯O1i0.84 (2)2.01 (2)2.8180 (18)163 (2)
O3—H3C⋯O1ii0.84 (2)1.91 (2)2.7395 (17)172 (2)
O4—H4C⋯O2iii0.86 (2)1.84 (2)2.6901 (18)173 (3)
O4—H4B⋯O20.81 (2)2.03 (2)2.8028 (18)159 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

Review 1.  Intermolecular interactions in nonorganic crystal engineering.

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Journal:  Acc Chem Res       Date:  2000-09       Impact factor: 22.384

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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  3 in total

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