| Literature DB >> 21589234 |
Abstract
The asymmetric unit of the title compound, [Ni(2)(C(8)H(6)O(8))(C(12)H(8)N(2))(2)(H(2)O)(6)]·6H(2)O, contains a half of the centrosymmetric dinuclear complex mol-ecule and three uncoordinated water mol-ecules. In the dinuclear mol-ecule, two Ni(II) cations are bridged by the butane-1,2,3,4-tetra-carboxyl-ate (BTC(4-)) anion. Each Ni(II) atom is coordinated by two N atoms from the 1,10-phenanthroline ligand, one O atom from the BTC(4-) anion and three aqua ligands in a distorted octa-hedral geometry. Inter-molecuar O-H⋯O hydrogen bonds and π-π stacking inter-ations [centroid-centroid distances = 3.646 (2), 3.781 (2) and 3.642 (2) Å] consolidate the crystal packing.Entities:
Year: 2010 PMID: 21589234 PMCID: PMC3011463 DOI: 10.1107/S1600536810045137
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni2(C8H6O8)(C12H8N2)2(H2O)6]·6H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 6619 reflections | |
| θ = 3.1–27.4° | |
| µ = 1.06 mm−1 | |
| α = 91.90 (3)° | |
| β = 97.14 (3)° | Block, green |
| γ = 111.54 (3)° | 0.43 × 0.39 × 0.32 mm |
| Rigaku R-AXIS RAPID diffractometer | 4195 independent reflections |
| Radiation source: fine-focus sealed tube | 3499 reflections with |
| graphite | |
| Detector resolution: 0 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7940 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4195 reflections | (Δ/σ)max = 0.001 |
| 262 parameters | Δρmax = 0.74 e Å−3 |
| 0 restraints | Δρmin = −0.48 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni | 0.68724 (4) | 0.80076 (4) | 0.76505 (3) | 0.02477 (12) | |
| N1 | 0.6678 (3) | 0.9786 (3) | 0.67867 (18) | 0.0276 (5) | |
| N2 | 0.7744 (3) | 0.7621 (3) | 0.62136 (19) | 0.0277 (5) | |
| O5 | 0.5825 (3) | 0.8507 (3) | 0.89489 (17) | 0.0423 (5) | |
| H5B | 0.4869 | 0.8552 | 0.8872 | 0.051* | |
| H5C | 0.6378 | 0.8539 | 0.9561 | 0.051* | |
| O6 | 0.4684 (2) | 0.6335 (2) | 0.69310 (17) | 0.0341 (5) | |
| H6B | 0.4833 | 0.5630 | 0.7195 | 0.041* | |
| H6C | 0.3783 | 0.6165 | 0.7092 | 0.041* | |
| O7 | 0.9146 (2) | 0.9445 (2) | 0.84282 (16) | 0.0293 (4) | |
| H7B | 0.9588 | 0.9008 | 0.8865 | 0.035* | |
| H7C | 0.9255 | 1.0310 | 0.8718 | 0.035* | |
| O1 | 0.7521 (2) | 0.6486 (2) | 0.84846 (17) | 0.0362 (5) | |
| O2 | 0.5423 (2) | 0.4320 (2) | 0.8157 (2) | 0.0425 (5) | |
| C1 | 0.6809 (3) | 0.5127 (3) | 0.8629 (2) | 0.0271 (6) | |
| C2 | 0.7714 (3) | 0.4396 (3) | 0.9396 (2) | 0.0290 (6) | |
| H2A | 0.7638 | 0.3446 | 0.9035 | 0.035* | |
| H2B | 0.7215 | 0.4176 | 1.0059 | 0.035* | |
| C3 | 0.9509 (3) | 0.5431 (3) | 0.9717 (2) | 0.0295 (6) | |
| H3A | 0.9948 | 0.5802 | 0.9044 | 0.035* | |
| C4 | 0.9715 (3) | 0.6820 (3) | 1.0517 (2) | 0.0309 (6) | |
| O3 | 0.9006 (3) | 0.6585 (2) | 1.13534 (18) | 0.0407 (5) | |
| O4 | 1.0589 (3) | 0.8098 (2) | 1.02824 (17) | 0.0347 (5) | |
| C5 | 0.6195 (4) | 1.0876 (4) | 0.7097 (3) | 0.0359 (7) | |
| H5A | 0.5862 | 1.0870 | 0.7786 | 0.043* | |
| C6 | 0.6166 (4) | 1.2032 (4) | 0.6433 (3) | 0.0434 (8) | |
| H6A | 0.5815 | 1.2773 | 0.6678 | 0.052* | |
| C7 | 0.6657 (4) | 1.2063 (4) | 0.5420 (3) | 0.0415 (8) | |
| H7A | 0.6635 | 1.2821 | 0.4967 | 0.050* | |
| C8 | 0.7197 (4) | 1.0935 (4) | 0.5066 (2) | 0.0347 (6) | |
| C9 | 0.7752 (4) | 1.0884 (4) | 0.4024 (3) | 0.0431 (8) | |
| H9A | 0.7787 | 1.1638 | 0.3554 | 0.052* | |
| C10 | 0.8223 (4) | 0.9765 (4) | 0.3714 (2) | 0.0427 (8) | |
| H10A | 0.8570 | 0.9755 | 0.3032 | 0.051* | |
| C11 | 0.8201 (4) | 0.8591 (4) | 0.4419 (2) | 0.0346 (7) | |
| C12 | 0.8641 (4) | 0.7363 (4) | 0.4137 (3) | 0.0432 (8) | |
| H12A | 0.8931 | 0.7258 | 0.3446 | 0.052* | |
| C13 | 0.8637 (4) | 0.6342 (4) | 0.4880 (3) | 0.0460 (8) | |
| H13A | 0.8919 | 0.5528 | 0.4698 | 0.055* | |
| C14 | 0.8207 (4) | 0.6510 (3) | 0.5925 (3) | 0.0361 (7) | |
| H14A | 0.8248 | 0.5817 | 0.6433 | 0.043* | |
| C15 | 0.7721 (3) | 0.8636 (3) | 0.5468 (2) | 0.0278 (6) | |
| C16 | 0.7193 (3) | 0.9821 (3) | 0.5787 (2) | 0.0265 (6) | |
| O8 | 0.1691 (3) | 0.5950 (3) | 0.74263 (19) | 0.0460 (6) | |
| H8A | 0.1488 | 0.5207 | 0.7791 | 0.055* | |
| H8B | 0.2014 | 0.6772 | 0.7847 | 0.055* | |
| O9 | 0.6790 (3) | 0.8105 (2) | 0.10898 (17) | 0.0368 (5) | |
| H9B | 0.6128 | 0.7421 | 0.1314 | 0.044* | |
| H9C | 0.7676 | 0.7992 | 0.1111 | 0.044* | |
| O10 | 0.7218 (3) | 0.1261 (3) | 0.11685 (18) | 0.0414 (5) | |
| H10B | 0.7796 | 0.1543 | 0.0685 | 0.050* | |
| H10C | 0.6930 | 0.0308 | 0.1270 | 0.050* |
| Ni | 0.02751 (19) | 0.0260 (2) | 0.02009 (18) | 0.00896 (15) | 0.00360 (12) | 0.00473 (13) |
| N1 | 0.0332 (12) | 0.0274 (12) | 0.0232 (11) | 0.0130 (10) | 0.0028 (9) | 0.0010 (9) |
| N2 | 0.0303 (12) | 0.0245 (12) | 0.0271 (11) | 0.0088 (10) | 0.0050 (9) | 0.0010 (9) |
| O5 | 0.0404 (12) | 0.0683 (16) | 0.0246 (10) | 0.0258 (12) | 0.0092 (9) | 0.0079 (10) |
| O6 | 0.0273 (10) | 0.0366 (12) | 0.0340 (11) | 0.0079 (9) | 0.0003 (8) | 0.0058 (9) |
| O7 | 0.0298 (10) | 0.0219 (9) | 0.0316 (10) | 0.0056 (8) | 0.0010 (8) | −0.0010 (8) |
| O1 | 0.0333 (11) | 0.0268 (11) | 0.0411 (12) | 0.0053 (9) | −0.0048 (9) | 0.0126 (9) |
| O2 | 0.0284 (11) | 0.0325 (12) | 0.0570 (14) | 0.0039 (10) | −0.0069 (10) | 0.0115 (10) |
| C1 | 0.0299 (14) | 0.0277 (14) | 0.0254 (13) | 0.0121 (12) | 0.0061 (10) | 0.0038 (11) |
| C2 | 0.0279 (14) | 0.0259 (14) | 0.0317 (14) | 0.0088 (12) | 0.0014 (11) | 0.0065 (11) |
| C3 | 0.0286 (14) | 0.0297 (15) | 0.0299 (14) | 0.0101 (12) | 0.0051 (11) | 0.0063 (11) |
| C4 | 0.0323 (14) | 0.0278 (15) | 0.0372 (15) | 0.0141 (13) | 0.0122 (12) | 0.0042 (12) |
| O3 | 0.0549 (14) | 0.0318 (11) | 0.0429 (12) | 0.0187 (11) | 0.0256 (10) | 0.0068 (9) |
| O4 | 0.0410 (12) | 0.0183 (10) | 0.0408 (12) | 0.0043 (9) | 0.0133 (9) | −0.0007 (8) |
| C5 | 0.0408 (17) | 0.0344 (16) | 0.0326 (15) | 0.0155 (14) | 0.0025 (12) | −0.0020 (12) |
| C6 | 0.052 (2) | 0.0318 (17) | 0.0468 (19) | 0.0198 (16) | −0.0031 (15) | −0.0022 (14) |
| C7 | 0.0484 (19) | 0.0286 (16) | 0.0433 (18) | 0.0126 (15) | −0.0047 (14) | 0.0088 (13) |
| C8 | 0.0374 (16) | 0.0332 (16) | 0.0275 (14) | 0.0081 (13) | −0.0024 (12) | 0.0074 (12) |
| C9 | 0.0454 (18) | 0.048 (2) | 0.0273 (15) | 0.0073 (16) | 0.0024 (13) | 0.0158 (14) |
| C10 | 0.0431 (18) | 0.056 (2) | 0.0204 (14) | 0.0082 (16) | 0.0061 (12) | 0.0070 (13) |
| C11 | 0.0298 (14) | 0.0429 (17) | 0.0242 (14) | 0.0065 (13) | 0.0027 (11) | −0.0031 (12) |
| C12 | 0.0417 (17) | 0.052 (2) | 0.0313 (16) | 0.0119 (16) | 0.0088 (13) | −0.0114 (15) |
| C13 | 0.0459 (19) | 0.047 (2) | 0.048 (2) | 0.0214 (17) | 0.0077 (15) | −0.0147 (16) |
| C14 | 0.0389 (16) | 0.0293 (15) | 0.0414 (17) | 0.0140 (13) | 0.0071 (13) | 0.0003 (13) |
| C15 | 0.0273 (13) | 0.0307 (15) | 0.0211 (12) | 0.0067 (12) | 0.0023 (10) | −0.0006 (10) |
| C16 | 0.0271 (13) | 0.0255 (14) | 0.0222 (13) | 0.0051 (11) | 0.0008 (10) | 0.0021 (10) |
| O8 | 0.0597 (15) | 0.0415 (13) | 0.0427 (13) | 0.0203 (12) | 0.0224 (11) | 0.0110 (10) |
| O9 | 0.0392 (12) | 0.0368 (12) | 0.0362 (11) | 0.0151 (10) | 0.0084 (9) | 0.0080 (9) |
| O10 | 0.0485 (13) | 0.0418 (13) | 0.0422 (12) | 0.0214 (11) | 0.0208 (10) | 0.0104 (10) |
| Ni—O1 | 2.017 (2) | C5—C6 | 1.397 (5) |
| Ni—O5 | 2.076 (2) | C5—H5A | 0.9300 |
| Ni—N1 | 2.078 (2) | C6—C7 | 1.367 (5) |
| Ni—O7 | 2.090 (2) | C6—H6A | 0.9300 |
| Ni—N2 | 2.091 (2) | C7—C8 | 1.410 (5) |
| Ni—O6 | 2.095 (2) | C7—H7A | 0.9300 |
| N1—C5 | 1.328 (4) | C8—C16 | 1.403 (4) |
| N1—C16 | 1.361 (3) | C8—C9 | 1.435 (4) |
| N2—C14 | 1.326 (4) | C9—C10 | 1.346 (5) |
| N2—C15 | 1.356 (4) | C9—H9A | 0.9300 |
| O5—H5B | 0.8747 | C10—C11 | 1.433 (5) |
| O5—H5C | 0.8409 | C10—H10A | 0.9300 |
| O6—H6B | 0.8032 | C11—C15 | 1.411 (4) |
| O6—H6C | 0.8211 | C11—C12 | 1.413 (5) |
| O7—H7B | 0.8391 | C12—C13 | 1.354 (5) |
| O7—H7C | 0.8530 | C12—H12A | 0.9300 |
| O1—C1 | 1.247 (3) | C13—C14 | 1.405 (5) |
| O2—C1 | 1.256 (3) | C13—H13A | 0.9300 |
| C1—C2 | 1.519 (4) | C14—H14A | 0.9300 |
| C2—C3 | 1.549 (4) | C15—C16 | 1.439 (4) |
| C2—H2A | 0.9700 | O8—H8A | 0.8255 |
| C2—H2B | 0.9700 | O8—H8B | 0.8567 |
| C3—C3i | 1.537 (5) | O9—H9B | 0.7902 |
| C3—C4 | 1.561 (4) | O9—H9C | 0.8441 |
| C3—H3A | 0.9800 | O10—H10B | 0.8251 |
| C4—O4 | 1.251 (4) | O10—H10C | 0.8664 |
| C4—O3 | 1.259 (4) | ||
| Cg1···Cg1ii | 3.646 (2) | Cg2···Cg3iii | 3.642 (2) |
| Cg1···Cg3ii | 3.781 (2) | ||
| O1—Ni—O5 | 92.22 (10) | C2—C3—H3A | 108.5 |
| O1—Ni—N1 | 168.90 (9) | C4—C3—H3A | 108.5 |
| O5—Ni—N1 | 93.36 (9) | O4—C4—O3 | 124.4 (3) |
| O1—Ni—O7 | 81.02 (8) | O4—C4—C3 | 117.3 (2) |
| O5—Ni—O7 | 90.53 (9) | O3—C4—C3 | 118.3 (3) |
| N1—Ni—O7 | 89.35 (9) | N1—C5—C6 | 122.8 (3) |
| O1—Ni—N2 | 94.72 (10) | N1—C5—H5A | 118.6 |
| O5—Ni—N2 | 172.60 (9) | C6—C5—H5A | 118.6 |
| N1—Ni—N2 | 80.24 (9) | C7—C6—C5 | 119.4 (3) |
| O7—Ni—N2 | 93.08 (9) | C7—C6—H6A | 120.3 |
| O1—Ni—O6 | 91.78 (9) | C5—C6—H6A | 120.3 |
| O5—Ni—O6 | 91.48 (9) | C6—C7—C8 | 119.4 (3) |
| N1—Ni—O6 | 97.65 (9) | C6—C7—H7A | 120.3 |
| O7—Ni—O6 | 172.59 (8) | C8—C7—H7A | 120.3 |
| N2—Ni—O6 | 85.75 (9) | C16—C8—C7 | 117.4 (3) |
| C5—N1—C16 | 118.2 (3) | C16—C8—C9 | 119.2 (3) |
| C5—N1—Ni | 129.1 (2) | C7—C8—C9 | 123.4 (3) |
| C16—N1—Ni | 112.61 (18) | C10—C9—C8 | 121.2 (3) |
| C14—N2—C15 | 117.9 (3) | C10—C9—H9A | 119.4 |
| C14—N2—Ni | 129.5 (2) | C8—C9—H9A | 119.4 |
| C15—N2—Ni | 112.43 (18) | C9—C10—C11 | 121.1 (3) |
| Ni—O5—H5B | 123.9 | C9—C10—H10A | 119.4 |
| Ni—O5—H5C | 111.3 | C11—C10—H10A | 119.4 |
| H5B—O5—H5C | 124.2 | C15—C11—C12 | 116.6 (3) |
| Ni—O6—H6B | 96.9 | C15—C11—C10 | 119.3 (3) |
| Ni—O6—H6C | 128.3 | C12—C11—C10 | 124.2 (3) |
| H6B—O6—H6C | 98.2 | C13—C12—C11 | 119.6 (3) |
| Ni—O7—H7B | 112.7 | C13—C12—H12A | 120.2 |
| Ni—O7—H7C | 118.6 | C11—C12—H12A | 120.2 |
| H7B—O7—H7C | 110.8 | C12—C13—C14 | 120.0 (3) |
| C1—O1—Ni | 133.77 (19) | C12—C13—H13A | 120.0 |
| O1—C1—O2 | 124.4 (3) | C14—C13—H13A | 120.0 |
| O1—C1—C2 | 117.3 (2) | N2—C14—C13 | 122.4 (3) |
| O2—C1—C2 | 118.3 (3) | N2—C14—H14A | 118.8 |
| C1—C2—C3 | 111.9 (2) | C13—C14—H14A | 118.8 |
| C1—C2—H2A | 109.2 | N2—C15—C11 | 123.4 (3) |
| C3—C2—H2A | 109.2 | N2—C15—C16 | 117.2 (2) |
| C1—C2—H2B | 109.2 | C11—C15—C16 | 119.3 (3) |
| C3—C2—H2B | 109.2 | N1—C16—C8 | 122.7 (3) |
| H2A—C2—H2B | 107.9 | N1—C16—C15 | 117.4 (2) |
| C3i—C3—C2 | 111.6 (3) | C8—C16—C15 | 119.9 (3) |
| C3i—C3—C4 | 108.1 (3) | H8A—O8—H8B | 111.0 |
| C2—C3—C4 | 111.4 (2) | H9B—O9—H9C | 112.7 |
| C3i—C3—H3A | 108.5 | H10B—O10—H10C | 114.8 |
| H··· | ||||
| O5—H5B···O10iv | 0.87 | 1.95 | 2.826 (4) | 175 |
| O5—H5C···O9v | 0.84 | 1.95 | 2.745 (3) | 157 |
| O6—H6B···O2 | 0.80 | 1.91 | 2.698 (3) | 165 |
| O6—H6C···O8 | 0.82 | 1.92 | 2.741 (4) | 175 |
| O7—H7B···O4 | 0.84 | 2.21 | 3.033 (3) | 168 |
| O7—H7C···O4vi | 0.85 | 1.87 | 2.700 (3) | 163 |
| O8—H8A···O3vii | 0.83 | 1.97 | 2.798 (3) | 179 |
| O8—H8B···O10iv | 0.86 | 2.03 | 2.891 (4) | 179 |
| O9—H9B···O2iv | 0.79 | 1.93 | 2.721 (3) | 177 |
| O9—H9C···O3viii | 0.84 | 2.11 | 2.867 (4) | 149 |
| O10—H10B···O4ix | 0.82 | 1.93 | 2.743 (3) | 166 |
| O10—H10C···O9x | 0.87 | 2.06 | 2.886 (3) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.87 | 1.95 | 2.826 (4) | 175 |
| O5—H5 | 0.84 | 1.95 | 2.745 (3) | 157 |
| O6—H6 | 0.80 | 1.91 | 2.698 (3) | 165 |
| O6—H6 | 0.82 | 1.92 | 2.741 (4) | 175 |
| O7—H7 | 0.84 | 2.21 | 3.033 (3) | 168 |
| O7—H7 | 0.85 | 1.87 | 2.700 (3) | 163 |
| O8—H8 | 0.83 | 1.97 | 2.798 (3) | 179 |
| O8—H8 | 0.86 | 2.03 | 2.891 (4) | 179 |
| O9—H9 | 0.79 | 1.93 | 2.721 (3) | 177 |
| O9—H9 | 0.84 | 2.11 | 2.867 (4) | 149 |
| O10—H10 | 0.82 | 1.93 | 2.743 (3) | 166 |
| O10—H10 | 0.87 | 2.06 | 2.886 (3) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .