Literature DB >> 21589234

(μ-Butane-1,2,3,4-tetra-carboxyl-ato)bis-[triaqua-(1,10-phenanthroline)nickel(II)] hexa-hydrate.

Hong-Lin Zhu1.   

Abstract

The asymmetric unit of the title compound, [Ni(2)(C(8)H(6)O(8))(C(12)H(8)N(2))(2)(H(2)O)(6)]·6H(2)O, contains a half of the centrosymmetric dinuclear complex mol-ecule and three uncoordinated water mol-ecules. In the dinuclear mol-ecule, two Ni(II) cations are bridged by the butane-1,2,3,4-tetra-carboxyl-ate (BTC(4-)) anion. Each Ni(II) atom is coordinated by two N atoms from the 1,10-phenanthroline ligand, one O atom from the BTC(4-) anion and three aqua ligands in a distorted octa-hedral geometry. Inter-molecuar O-H⋯O hydrogen bonds and π-π stacking inter-ations [centroid-centroid distances = 3.646 (2), 3.781 (2) and 3.642 (2) Å] consolidate the crystal packing.

Entities:  

Year:  2010        PMID: 21589234      PMCID: PMC3011463          DOI: 10.1107/S1600536810045137

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chen et al. (2008 ▶); Ghosh et al. (2004 ▶); Fabelo et al. (2008 ▶); Zhu & Zheng (2010 ▶).

Experimental

Crystal data

[Ni2(C8H6O8)(C12H8N2)2(H2O)6]·6H2O M = 924.15 Triclinic, a = 9.0382 (18) Å b = 9.5342 (19) Å c = 12.253 (3) Å α = 91.90 (3)° β = 97.14 (3)° γ = 111.54 (3)° V = 971.0 (3) Å3 Z = 1 Mo Kα radiation μ = 1.06 mm−1 T = 293 K 0.43 × 0.39 × 0.32 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.641, T max = 0.713 7940 measured reflections 4195 independent reflections 3499 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.108 S = 1.17 4195 reflections 262 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.48 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045137/cv2791sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045137/cv2791Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni2(C8H6O8)(C12H8N2)2(H2O)6]·6H2OZ = 1
Mr = 924.15F(000) = 482
Triclinic, P1Dx = 1.580 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0382 (18) ÅCell parameters from 6619 reflections
b = 9.5342 (19) Åθ = 3.1–27.4°
c = 12.253 (3) ŵ = 1.06 mm1
α = 91.90 (3)°T = 293 K
β = 97.14 (3)°Block, green
γ = 111.54 (3)°0.43 × 0.39 × 0.32 mm
V = 971.0 (3) Å3
Rigaku R-AXIS RAPID diffractometer4195 independent reflections
Radiation source: fine-focus sealed tube3499 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 0 pixels mm-1θmax = 27.4°, θmin = 3.1°
ω scansh = −11→11
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −12→10
Tmin = 0.641, Tmax = 0.713l = −15→15
7940 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0364P)2 + 1.1101P] where P = (Fo2 + 2Fc2)/3
4195 reflections(Δ/σ)max = 0.001
262 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.68724 (4)0.80076 (4)0.76505 (3)0.02477 (12)
N10.6678 (3)0.9786 (3)0.67867 (18)0.0276 (5)
N20.7744 (3)0.7621 (3)0.62136 (19)0.0277 (5)
O50.5825 (3)0.8507 (3)0.89489 (17)0.0423 (5)
H5B0.48690.85520.88720.051*
H5C0.63780.85390.95610.051*
O60.4684 (2)0.6335 (2)0.69310 (17)0.0341 (5)
H6B0.48330.56300.71950.041*
H6C0.37830.61650.70920.041*
O70.9146 (2)0.9445 (2)0.84282 (16)0.0293 (4)
H7B0.95880.90080.88650.035*
H7C0.92551.03100.87180.035*
O10.7521 (2)0.6486 (2)0.84846 (17)0.0362 (5)
O20.5423 (2)0.4320 (2)0.8157 (2)0.0425 (5)
C10.6809 (3)0.5127 (3)0.8629 (2)0.0271 (6)
C20.7714 (3)0.4396 (3)0.9396 (2)0.0290 (6)
H2A0.76380.34460.90350.035*
H2B0.72150.41761.00590.035*
C30.9509 (3)0.5431 (3)0.9717 (2)0.0295 (6)
H3A0.99480.58020.90440.035*
C40.9715 (3)0.6820 (3)1.0517 (2)0.0309 (6)
O30.9006 (3)0.6585 (2)1.13534 (18)0.0407 (5)
O41.0589 (3)0.8098 (2)1.02824 (17)0.0347 (5)
C50.6195 (4)1.0876 (4)0.7097 (3)0.0359 (7)
H5A0.58621.08700.77860.043*
C60.6166 (4)1.2032 (4)0.6433 (3)0.0434 (8)
H6A0.58151.27730.66780.052*
C70.6657 (4)1.2063 (4)0.5420 (3)0.0415 (8)
H7A0.66351.28210.49670.050*
C80.7197 (4)1.0935 (4)0.5066 (2)0.0347 (6)
C90.7752 (4)1.0884 (4)0.4024 (3)0.0431 (8)
H9A0.77871.16380.35540.052*
C100.8223 (4)0.9765 (4)0.3714 (2)0.0427 (8)
H10A0.85700.97550.30320.051*
C110.8201 (4)0.8591 (4)0.4419 (2)0.0346 (7)
C120.8641 (4)0.7363 (4)0.4137 (3)0.0432 (8)
H12A0.89310.72580.34460.052*
C130.8637 (4)0.6342 (4)0.4880 (3)0.0460 (8)
H13A0.89190.55280.46980.055*
C140.8207 (4)0.6510 (3)0.5925 (3)0.0361 (7)
H14A0.82480.58170.64330.043*
C150.7721 (3)0.8636 (3)0.5468 (2)0.0278 (6)
C160.7193 (3)0.9821 (3)0.5787 (2)0.0265 (6)
O80.1691 (3)0.5950 (3)0.74263 (19)0.0460 (6)
H8A0.14880.52070.77910.055*
H8B0.20140.67720.78470.055*
O90.6790 (3)0.8105 (2)0.10898 (17)0.0368 (5)
H9B0.61280.74210.13140.044*
H9C0.76760.79920.11110.044*
O100.7218 (3)0.1261 (3)0.11685 (18)0.0414 (5)
H10B0.77960.15430.06850.050*
H10C0.69300.03080.12700.050*
U11U22U33U12U13U23
Ni0.02751 (19)0.0260 (2)0.02009 (18)0.00896 (15)0.00360 (12)0.00473 (13)
N10.0332 (12)0.0274 (12)0.0232 (11)0.0130 (10)0.0028 (9)0.0010 (9)
N20.0303 (12)0.0245 (12)0.0271 (11)0.0088 (10)0.0050 (9)0.0010 (9)
O50.0404 (12)0.0683 (16)0.0246 (10)0.0258 (12)0.0092 (9)0.0079 (10)
O60.0273 (10)0.0366 (12)0.0340 (11)0.0079 (9)0.0003 (8)0.0058 (9)
O70.0298 (10)0.0219 (9)0.0316 (10)0.0056 (8)0.0010 (8)−0.0010 (8)
O10.0333 (11)0.0268 (11)0.0411 (12)0.0053 (9)−0.0048 (9)0.0126 (9)
O20.0284 (11)0.0325 (12)0.0570 (14)0.0039 (10)−0.0069 (10)0.0115 (10)
C10.0299 (14)0.0277 (14)0.0254 (13)0.0121 (12)0.0061 (10)0.0038 (11)
C20.0279 (14)0.0259 (14)0.0317 (14)0.0088 (12)0.0014 (11)0.0065 (11)
C30.0286 (14)0.0297 (15)0.0299 (14)0.0101 (12)0.0051 (11)0.0063 (11)
C40.0323 (14)0.0278 (15)0.0372 (15)0.0141 (13)0.0122 (12)0.0042 (12)
O30.0549 (14)0.0318 (11)0.0429 (12)0.0187 (11)0.0256 (10)0.0068 (9)
O40.0410 (12)0.0183 (10)0.0408 (12)0.0043 (9)0.0133 (9)−0.0007 (8)
C50.0408 (17)0.0344 (16)0.0326 (15)0.0155 (14)0.0025 (12)−0.0020 (12)
C60.052 (2)0.0318 (17)0.0468 (19)0.0198 (16)−0.0031 (15)−0.0022 (14)
C70.0484 (19)0.0286 (16)0.0433 (18)0.0126 (15)−0.0047 (14)0.0088 (13)
C80.0374 (16)0.0332 (16)0.0275 (14)0.0081 (13)−0.0024 (12)0.0074 (12)
C90.0454 (18)0.048 (2)0.0273 (15)0.0073 (16)0.0024 (13)0.0158 (14)
C100.0431 (18)0.056 (2)0.0204 (14)0.0082 (16)0.0061 (12)0.0070 (13)
C110.0298 (14)0.0429 (17)0.0242 (14)0.0065 (13)0.0027 (11)−0.0031 (12)
C120.0417 (17)0.052 (2)0.0313 (16)0.0119 (16)0.0088 (13)−0.0114 (15)
C130.0459 (19)0.047 (2)0.048 (2)0.0214 (17)0.0077 (15)−0.0147 (16)
C140.0389 (16)0.0293 (15)0.0414 (17)0.0140 (13)0.0071 (13)0.0003 (13)
C150.0273 (13)0.0307 (15)0.0211 (12)0.0067 (12)0.0023 (10)−0.0006 (10)
C160.0271 (13)0.0255 (14)0.0222 (13)0.0051 (11)0.0008 (10)0.0021 (10)
O80.0597 (15)0.0415 (13)0.0427 (13)0.0203 (12)0.0224 (11)0.0110 (10)
O90.0392 (12)0.0368 (12)0.0362 (11)0.0151 (10)0.0084 (9)0.0080 (9)
O100.0485 (13)0.0418 (13)0.0422 (12)0.0214 (11)0.0208 (10)0.0104 (10)
Ni—O12.017 (2)C5—C61.397 (5)
Ni—O52.076 (2)C5—H5A0.9300
Ni—N12.078 (2)C6—C71.367 (5)
Ni—O72.090 (2)C6—H6A0.9300
Ni—N22.091 (2)C7—C81.410 (5)
Ni—O62.095 (2)C7—H7A0.9300
N1—C51.328 (4)C8—C161.403 (4)
N1—C161.361 (3)C8—C91.435 (4)
N2—C141.326 (4)C9—C101.346 (5)
N2—C151.356 (4)C9—H9A0.9300
O5—H5B0.8747C10—C111.433 (5)
O5—H5C0.8409C10—H10A0.9300
O6—H6B0.8032C11—C151.411 (4)
O6—H6C0.8211C11—C121.413 (5)
O7—H7B0.8391C12—C131.354 (5)
O7—H7C0.8530C12—H12A0.9300
O1—C11.247 (3)C13—C141.405 (5)
O2—C11.256 (3)C13—H13A0.9300
C1—C21.519 (4)C14—H14A0.9300
C2—C31.549 (4)C15—C161.439 (4)
C2—H2A0.9700O8—H8A0.8255
C2—H2B0.9700O8—H8B0.8567
C3—C3i1.537 (5)O9—H9B0.7902
C3—C41.561 (4)O9—H9C0.8441
C3—H3A0.9800O10—H10B0.8251
C4—O41.251 (4)O10—H10C0.8664
C4—O31.259 (4)
Cg1···Cg1ii3.646 (2)Cg2···Cg3iii3.642 (2)
Cg1···Cg3ii3.781 (2)
O1—Ni—O592.22 (10)C2—C3—H3A108.5
O1—Ni—N1168.90 (9)C4—C3—H3A108.5
O5—Ni—N193.36 (9)O4—C4—O3124.4 (3)
O1—Ni—O781.02 (8)O4—C4—C3117.3 (2)
O5—Ni—O790.53 (9)O3—C4—C3118.3 (3)
N1—Ni—O789.35 (9)N1—C5—C6122.8 (3)
O1—Ni—N294.72 (10)N1—C5—H5A118.6
O5—Ni—N2172.60 (9)C6—C5—H5A118.6
N1—Ni—N280.24 (9)C7—C6—C5119.4 (3)
O7—Ni—N293.08 (9)C7—C6—H6A120.3
O1—Ni—O691.78 (9)C5—C6—H6A120.3
O5—Ni—O691.48 (9)C6—C7—C8119.4 (3)
N1—Ni—O697.65 (9)C6—C7—H7A120.3
O7—Ni—O6172.59 (8)C8—C7—H7A120.3
N2—Ni—O685.75 (9)C16—C8—C7117.4 (3)
C5—N1—C16118.2 (3)C16—C8—C9119.2 (3)
C5—N1—Ni129.1 (2)C7—C8—C9123.4 (3)
C16—N1—Ni112.61 (18)C10—C9—C8121.2 (3)
C14—N2—C15117.9 (3)C10—C9—H9A119.4
C14—N2—Ni129.5 (2)C8—C9—H9A119.4
C15—N2—Ni112.43 (18)C9—C10—C11121.1 (3)
Ni—O5—H5B123.9C9—C10—H10A119.4
Ni—O5—H5C111.3C11—C10—H10A119.4
H5B—O5—H5C124.2C15—C11—C12116.6 (3)
Ni—O6—H6B96.9C15—C11—C10119.3 (3)
Ni—O6—H6C128.3C12—C11—C10124.2 (3)
H6B—O6—H6C98.2C13—C12—C11119.6 (3)
Ni—O7—H7B112.7C13—C12—H12A120.2
Ni—O7—H7C118.6C11—C12—H12A120.2
H7B—O7—H7C110.8C12—C13—C14120.0 (3)
C1—O1—Ni133.77 (19)C12—C13—H13A120.0
O1—C1—O2124.4 (3)C14—C13—H13A120.0
O1—C1—C2117.3 (2)N2—C14—C13122.4 (3)
O2—C1—C2118.3 (3)N2—C14—H14A118.8
C1—C2—C3111.9 (2)C13—C14—H14A118.8
C1—C2—H2A109.2N2—C15—C11123.4 (3)
C3—C2—H2A109.2N2—C15—C16117.2 (2)
C1—C2—H2B109.2C11—C15—C16119.3 (3)
C3—C2—H2B109.2N1—C16—C8122.7 (3)
H2A—C2—H2B107.9N1—C16—C15117.4 (2)
C3i—C3—C2111.6 (3)C8—C16—C15119.9 (3)
C3i—C3—C4108.1 (3)H8A—O8—H8B111.0
C2—C3—C4111.4 (2)H9B—O9—H9C112.7
C3i—C3—H3A108.5H10B—O10—H10C114.8
D—H···AD—HH···AD···AD—H···A
O5—H5B···O10iv0.871.952.826 (4)175
O5—H5C···O9v0.841.952.745 (3)157
O6—H6B···O20.801.912.698 (3)165
O6—H6C···O80.821.922.741 (4)175
O7—H7B···O40.842.213.033 (3)168
O7—H7C···O4vi0.851.872.700 (3)163
O8—H8A···O3vii0.831.972.798 (3)179
O8—H8B···O10iv0.862.032.891 (4)179
O9—H9B···O2iv0.791.932.721 (3)177
O9—H9C···O3viii0.842.112.867 (4)149
O10—H10B···O4ix0.821.932.743 (3)166
O10—H10C···O9x0.872.062.886 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5B⋯O10i0.871.952.826 (4)175
O5—H5C⋯O9ii0.841.952.745 (3)157
O6—H6B⋯O20.801.912.698 (3)165
O6—H6C⋯O80.821.922.741 (4)175
O7—H7B⋯O40.842.213.033 (3)168
O7—H7C⋯O4iii0.851.872.700 (3)163
O8—H8A⋯O3iv0.831.972.798 (3)179
O8—H8B⋯O10i0.862.032.891 (4)179
O9—H9B⋯O2i0.791.932.721 (3)177
O9—H9C⋯O3v0.842.112.867 (4)149
O10—H10B⋯O4vi0.821.932.743 (3)166
O10—H10C⋯O9vii0.872.062.886 (3)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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