| Literature DB >> 21589232 |
Natalia V Tsaryk1, Anatolij V Dudko, Alexandra N Kozachkova, Vladimir V Bon, Vasily I Pekhnyo.
Abstract
In the title compound, [Cu(C(5)H(14)NO(6)P(2))(2)(H(2)O)(2)], the Cu(II) atom occupies a special position on an inversion centre. It exhibits a distorted octa-hedral coordination environment consisting of two O,O'-bidentate (1-ammonio-pentane-1,1-di-yl)diphospho-nate anions in the equatorial plane and two trans water mol-ecules located in axial positions. The ligand mol-ecules are coordinated to the Cu(II) atom in their zwitterionic form via two O atoms from different phospho-nate groups, creating two six-membered chelate rings with a screw-boat conformation. The CuO(6) coordination polyhedron is strongly elongated in the axial direction with 0.6 Å longer bonds than those in the equatorial plane. Intra-molecular N-H⋯O hydrogen bonding helps to stabilize the mol-ecular configuration. The presence of supra-molecular -PO(OH)⋯O(OH)P- units parallel to (100) and other O-H⋯O and N-H⋯O hydrogen bonds establish the three-dimensional set-up.Entities:
Year: 2010 PMID: 21589232 PMCID: PMC3011560 DOI: 10.1107/S1600536810045216
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C5H14NO6P2)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3621 reflections | |
| θ = 2.4–26.6° | |
| µ = 1.36 mm−1 | |
| α = 69.315 (1)° | |
| β = 86.666 (1)° | Rod, light blue |
| γ = 88.398 (1)° | 0.35 × 0.15 × 0.08 mm |
| Bruker APEXII CCD diffractometer | 2277 independent reflections |
| Radiation source: fine-focus sealed tube | 2104 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.7°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 5322 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2277 reflections | (Δ/σ)max < 0.001 |
| 168 parameters | Δρmax = 0.43 e Å−3 |
| 4 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cu1 | 1.0000 | 0.5000 | 0.5000 | 0.01029 (10) | |
| P1 | 0.98580 (8) | 0.44423 (5) | 0.21486 (4) | 0.00887 (11) | |
| P2 | 0.90052 (8) | 0.20736 (5) | 0.48297 (5) | 0.00893 (11) | |
| N1 | 0.5396 (3) | 0.34163 (17) | 0.32262 (17) | 0.0112 (3) | |
| H11N | 0.458 (4) | 0.367 (2) | 0.245 (3) | 0.017* | |
| H12N | 0.539 (4) | 0.416 (3) | 0.348 (2) | 0.017* | |
| H13N | 0.444 (4) | 0.274 (3) | 0.380 (2) | 0.017* | |
| O1 | 1.0859 (2) | 0.49686 (13) | 0.31854 (12) | 0.0116 (3) | |
| O2 | 0.8085 (2) | 0.55876 (14) | 0.12618 (14) | 0.0136 (3) | |
| H2O | 0.813 (5) | 0.573 (3) | 0.0476 (18) | 0.040 (8)* | |
| O3 | 1.1764 (2) | 0.40075 (14) | 0.12969 (13) | 0.0120 (3) | |
| O4 | 0.8517 (2) | 0.31422 (13) | 0.55360 (13) | 0.0114 (3) | |
| O5 | 1.1555 (2) | 0.15980 (13) | 0.46941 (13) | 0.0119 (3) | |
| O6 | 0.7259 (2) | 0.08082 (14) | 0.55649 (14) | 0.0131 (3) | |
| H6O | 0.767 (5) | 0.009 (2) | 0.546 (3) | 0.033 (8)* | |
| C1 | 0.7927 (3) | 0.28852 (18) | 0.31004 (18) | 0.0098 (3) | |
| C2 | 0.7970 (3) | 0.17564 (19) | 0.24218 (19) | 0.0136 (4) | |
| H2A | 0.9659 | 0.1442 | 0.2349 | 0.016* | |
| H2B | 0.7053 | 0.0919 | 0.3029 | 0.016* | |
| C3 | 0.6952 (4) | 0.2217 (2) | 0.10125 (19) | 0.0156 (4) | |
| H3A | 0.5172 | 0.2165 | 0.1103 | 0.019* | |
| H3B | 0.7404 | 0.3217 | 0.0488 | 0.019* | |
| C4 | 0.7925 (4) | 0.1255 (2) | 0.0260 (2) | 0.0231 (4) | |
| H4A | 0.7598 | 0.0250 | 0.0831 | 0.028* | |
| H4B | 0.9693 | 0.1369 | 0.0113 | 0.028* | |
| C5 | 0.6820 (5) | 0.1581 (3) | −0.1105 (2) | 0.0337 (6) | |
| H5A | 0.5063 | 0.1523 | −0.0973 | 0.050* | |
| H5B | 0.7410 | 0.0886 | −0.1515 | 0.050* | |
| H5C | 0.7275 | 0.2543 | −0.1709 | 0.050* | |
| O7 | 1.3880 (3) | 0.39603 (15) | 0.61934 (15) | 0.0182 (3) | |
| H71O | 1.511 (4) | 0.358 (3) | 0.610 (3) | 0.034 (8)* | |
| H72O | 1.335 (5) | 0.342 (3) | 0.689 (2) | 0.045 (9)* |
| Cu1 | 0.01286 (17) | 0.01044 (16) | 0.00899 (16) | −0.00195 (11) | 0.00097 (12) | −0.00526 (12) |
| P1 | 0.0090 (2) | 0.0103 (2) | 0.0078 (2) | −0.00018 (16) | −0.00004 (17) | −0.00388 (17) |
| P2 | 0.0094 (2) | 0.0088 (2) | 0.0089 (2) | −0.00008 (16) | −0.00038 (17) | −0.00345 (17) |
| N1 | 0.0092 (8) | 0.0124 (8) | 0.0121 (8) | −0.0011 (6) | −0.0007 (6) | −0.0045 (7) |
| O1 | 0.0125 (6) | 0.0135 (6) | 0.0099 (6) | −0.0031 (5) | 0.0013 (5) | −0.0055 (5) |
| O2 | 0.0160 (7) | 0.0145 (6) | 0.0094 (7) | 0.0037 (5) | −0.0007 (5) | −0.0035 (5) |
| O3 | 0.0106 (6) | 0.0161 (6) | 0.0098 (6) | 0.0010 (5) | 0.0003 (5) | −0.0057 (5) |
| O4 | 0.0140 (6) | 0.0109 (6) | 0.0104 (6) | −0.0023 (5) | 0.0013 (5) | −0.0050 (5) |
| O5 | 0.0105 (6) | 0.0105 (6) | 0.0151 (6) | 0.0001 (5) | −0.0013 (5) | −0.0050 (5) |
| O6 | 0.0140 (7) | 0.0097 (6) | 0.0160 (7) | −0.0013 (5) | 0.0030 (5) | −0.0053 (5) |
| C1 | 0.0082 (8) | 0.0114 (8) | 0.0109 (8) | 0.0000 (6) | 0.0000 (7) | −0.0051 (7) |
| C2 | 0.0167 (9) | 0.0122 (9) | 0.0138 (9) | −0.0007 (7) | −0.0015 (7) | −0.0069 (7) |
| C3 | 0.0182 (10) | 0.0168 (9) | 0.0138 (9) | 0.0000 (7) | −0.0043 (7) | −0.0075 (8) |
| C4 | 0.0331 (12) | 0.0222 (10) | 0.0175 (10) | 0.0016 (9) | −0.0021 (9) | −0.0117 (9) |
| C5 | 0.0554 (17) | 0.0308 (12) | 0.0196 (11) | −0.0073 (11) | −0.0052 (11) | −0.0137 (10) |
| O7 | 0.0157 (7) | 0.0187 (7) | 0.0184 (8) | 0.0027 (6) | 0.0016 (6) | −0.0050 (6) |
| Cu1—O4 | 1.9381 (12) | O2—H2O | 0.787 (17) |
| Cu1—O4i | 1.9381 (12) | O6—H6O | 0.791 (17) |
| Cu1—O1 | 1.9524 (12) | C1—C2 | 1.536 (2) |
| Cu1—O1i | 1.9524 (12) | C2—C3 | 1.527 (3) |
| Cu1—O7 | 2.5666 (15) | C2—H2A | 0.9900 |
| Cu1—O7i | 2.5666 (15) | C2—H2B | 0.9900 |
| P1—O3 | 1.5023 (13) | C3—C4 | 1.520 (3) |
| P1—O1 | 1.5075 (13) | C3—H3A | 0.9900 |
| P1—O2 | 1.5649 (13) | C3—H3B | 0.9900 |
| P1—C1 | 1.8594 (18) | C4—C5 | 1.520 (3) |
| P2—O5 | 1.4986 (13) | C4—H4A | 0.9900 |
| P2—O4 | 1.5153 (13) | C4—H4B | 0.9900 |
| P2—O6 | 1.5618 (14) | C5—H5A | 0.9800 |
| P2—C1 | 1.8404 (18) | C5—H5B | 0.9800 |
| N1—C1 | 1.507 (2) | C5—H5C | 0.9800 |
| N1—H11N | 0.91 (2) | O7—H71O | 0.791 (17) |
| N1—H12N | 0.88 (2) | O7—H72O | 0.786 (17) |
| N1—H13N | 0.89 (3) | ||
| O4—Cu1—O4i | 180.0 | N1—C1—P2 | 107.55 (12) |
| O4—Cu1—O1 | 91.21 (5) | C2—C1—P2 | 109.19 (12) |
| O4i—Cu1—O1 | 88.79 (5) | N1—C1—P1 | 108.41 (12) |
| O4—Cu1—O1i | 88.79 (5) | C2—C1—P1 | 112.60 (12) |
| O4i—Cu1—O1i | 91.21 (5) | P2—C1—P1 | 108.34 (9) |
| O1—Cu1—O1i | 180.0 | C3—C2—C1 | 116.32 (15) |
| O4—Cu1—O7 | 92.80 (5) | C3—C2—H2A | 108.2 |
| O4i—Cu1—O7 | 87.20 (5) | C1—C2—H2A | 108.2 |
| O1—Cu1—O7 | 99.95 (5) | C3—C2—H2B | 108.2 |
| O1i—Cu1—O7 | 80.05 (5) | C1—C2—H2B | 108.2 |
| O3—P1—O1 | 113.56 (7) | H2A—C2—H2B | 107.4 |
| O3—P1—O2 | 112.23 (7) | C4—C3—C2 | 110.18 (16) |
| O1—P1—O2 | 109.39 (7) | C4—C3—H3A | 109.6 |
| O3—P1—C1 | 109.48 (8) | C2—C3—H3A | 109.6 |
| O1—P1—C1 | 107.00 (8) | C4—C3—H3B | 109.6 |
| O2—P1—C1 | 104.67 (8) | C2—C3—H3B | 109.6 |
| O5—P2—O4 | 118.15 (7) | H3A—C3—H3B | 108.1 |
| O5—P2—O6 | 113.02 (7) | C3—C4—C5 | 112.75 (18) |
| O4—P2—O6 | 105.54 (7) | C3—C4—H4A | 109.0 |
| O5—P2—C1 | 107.25 (8) | C5—C4—H4A | 109.0 |
| O4—P2—C1 | 106.99 (8) | C3—C4—H4B | 109.0 |
| O6—P2—C1 | 105.01 (8) | C5—C4—H4B | 109.0 |
| C1—N1—H11N | 114.7 (14) | H4A—C4—H4B | 107.8 |
| C1—N1—H12N | 110.8 (15) | C4—C5—H5A | 109.5 |
| H11N—N1—H12N | 107 (2) | C4—C5—H5B | 109.5 |
| C1—N1—H13N | 112.7 (15) | H5A—C5—H5B | 109.5 |
| H11N—N1—H13N | 101 (2) | C4—C5—H5C | 109.5 |
| H12N—N1—H13N | 109 (2) | H5A—C5—H5C | 109.5 |
| P1—O1—Cu1 | 139.17 (8) | H5B—C5—H5C | 109.5 |
| P1—O2—H2O | 118 (2) | Cu1—O7—H71O | 142 (2) |
| P2—O4—Cu1 | 124.94 (8) | Cu1—O7—H72O | 101 (2) |
| P2—O6—H6O | 113 (2) | H71O—O7—H72O | 101 (3) |
| N1—C1—C2 | 110.60 (15) | ||
| O3—P1—O1—Cu1 | −148.54 (11) | O5—P2—C1—P1 | −60.90 (10) |
| O2—P1—O1—Cu1 | 85.23 (13) | O4—P2—C1—P1 | 66.79 (10) |
| C1—P1—O1—Cu1 | −27.63 (14) | O6—P2—C1—P1 | 178.62 (8) |
| O4—Cu1—O1—P1 | 35.20 (12) | O3—P1—C1—N1 | −146.05 (11) |
| O4i—Cu1—O1—P1 | −144.80 (12) | O1—P1—C1—N1 | 90.47 (12) |
| O7—Cu1—O1—P1 | 128.25 (12) | O2—P1—C1—N1 | −25.56 (13) |
| O5—P2—O4—Cu1 | 56.52 (11) | O3—P1—C1—C2 | −23.36 (14) |
| O6—P2—O4—Cu1 | −175.96 (8) | O1—P1—C1—C2 | −146.83 (12) |
| C1—P2—O4—Cu1 | −64.49 (11) | O2—P1—C1—C2 | 97.14 (13) |
| O1—Cu1—O4—P2 | 19.60 (9) | O3—P1—C1—P2 | 97.52 (9) |
| O1i—Cu1—O4—P2 | −160.40 (9) | O1—P1—C1—P2 | −25.95 (10) |
| O7—Cu1—O4—P2 | −80.42 (9) | O2—P1—C1—P2 | −141.98 (8) |
| O5—P2—C1—N1 | −177.89 (11) | N1—C1—C2—C3 | 57.4 (2) |
| O4—P2—C1—N1 | −50.20 (13) | P2—C1—C2—C3 | 175.60 (14) |
| O6—P2—C1—N1 | 61.64 (13) | P1—C1—C2—C3 | −64.01 (19) |
| O5—P2—C1—C2 | 62.07 (14) | C1—C2—C3—C4 | 158.78 (17) |
| O4—P2—C1—C2 | −170.25 (12) | C2—C3—C4—C5 | 175.28 (19) |
| O6—P2—C1—C2 | −58.41 (14) |
| H··· | ||||
| N1—H11N···O3ii | 0.91 (2) | 1.98 (3) | 2.849 (2) | 158 (2) |
| N1—H12N···O7i | 0.88 (2) | 2.08 (3) | 2.945 (2) | 167 (2) |
| N1—H13N···O5ii | 0.89 (3) | 1.99 (3) | 2.849 (2) | 162 (2) |
| O2—H2O···O3iii | 0.79 (2) | 1.79 (2) | 2.5741 (18) | 178 (3) |
| O6—H6O···O5iv | 0.79 (2) | 1.80 (2) | 2.5848 (18) | 176 (3) |
| O7—H71O···O4v | 0.79 (2) | 2.04 (2) | 2.8071 (19) | 165 (3) |
| O7—H72O···O2i | 0.79 (2) | 2.56 (3) | 3.010 (2) | 118 (3) |
Selected bond lengths (Å)
| Cu1—O4 | 1.9381 (12) |
| Cu1—O1 | 1.9524 (12) |
| Cu1—O7 | 2.5666 (15) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H11 | 0.91 (2) | 1.98 (3) | 2.849 (2) | 158 (2) |
| N1—H12 | 0.88 (2) | 2.08 (3) | 2.945 (2) | 167 (2) |
| N1—H13 | 0.89 (3) | 1.99 (3) | 2.849 (2) | 162 (2) |
| O2—H2 | 0.79 (2) | 1.79 (2) | 2.5741 (18) | 178 (3) |
| O6—H6 | 0.79 (2) | 1.80 (2) | 2.5848 (18) | 176 (3) |
| O7—H71 | 0.79 (2) | 2.04 (2) | 2.8071 (19) | 165 (3) |
| O7—H72 | 0.79 (2) | 2.56 (3) | 3.010 (2) | 118 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .