Literature DB >> 21589225

Diaqua-bis-{2-hy-droxy-5-[(pyridin-2-yl)methyl-idene-amino]-benzoato-κN,N'}zinc(II) dihydrate.

Yue Bing1, Xing Li, Meiqin Zha, Yue Lu.   

Abstract

The complex mol-ecule of the title compound, [Zn(C(13)H(9)N(2)O(3))(2)(H(2)O)(2)]·2H(2)O, has 2 symmetry with the Zn(II) cation located on a twofold rotation axis. The Zn cation is N,N'-chelated by two 5-[(pyridin-2-yl)methyl-idene-amino]-2-hy-droxy-benzoate anions and coordinated by two water mol-ecules in a distorted octa-hedral geometry. Within the anionic ligand, the pyridine ring is oriented at a dihedral angle of 49.54 (10)° with respect to the benzene ring. The carboxyl-ate group of the anionic ligand is not involved in coordination but is O-H⋯O hydrogen bonded to the coordinated and uncoordinated water mol-ecules. Weak inter-molecular C-H⋯O hydrogen bonding is also present in the crystal structure.

Entities:  

Year:  2010        PMID: 21589225      PMCID: PMC3011778          DOI: 10.1107/S160053681004496X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is a Schiff base complex; for potential applications of Schiff base compounds, see: Bourque et al. (2005 ▶); Donald & Osit (2010 ▶); Feng et al. (2007 ▶); Gang et al. (2007 ▶); Shanta et al. (2003 ▶).

Experimental

Crystal data

[Zn(C13H9N2O3)2(H2O)2]·2H2O M = 619.90 Orthorhombic, a = 15.812 (2) Å b = 10.6962 (15) Å c = 15.636 (2) Å V = 2644.5 (6) Å3 Z = 4 Mo Kα radiation μ = 1.00 mm−1 T = 296 K 0.43 × 0.32 × 0.27 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.689, T max = 0.764 21797 measured reflections 3041 independent reflections 2291 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.083 S = 1.03 3041 reflections 206 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.29 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004496X/xu5074sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004496X/xu5074Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C13H9N2O3)2(H2O)2]·2H2OF(000) = 1280
Mr = 619.90Dx = 1.557 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 5445 reflections
a = 15.812 (2) Åθ = 2.3–26.5°
b = 10.6962 (15) ŵ = 1.00 mm1
c = 15.636 (2) ÅT = 296 K
V = 2644.5 (6) Å3Block, yellow
Z = 40.43 × 0.32 × 0.27 mm
Bruker SMART APEX CCD area-detector diffractometer3041 independent reflections
Radiation source: fine-focus sealed tube2291 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 27.5°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −20→20
Tmin = 0.689, Tmax = 0.764k = −13→13
21797 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0389P)2 + 0.7619P] where P = (Fo2 + 2Fc2)/3
3041 reflections(Δ/σ)max < 0.001
206 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.29 e Å3
Experimental. IR (KBr, cm-1): 3455(versus), 3088(w), 2924(w), 2361(w), 1919(w), 1668(s), 1602(m), 1578(m), 1489(versus), 1447(m), 1364(versus), 1299(m), 1245(s), 1161(m), 1084(m), 1054(s), 959(w), 893(m), 839(s), 792(versus), 655(m), 572(m), 512(m).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50000.40959 (2)0.25000.03779 (10)
O10.49550 (12)0.53276 (14)0.14990 (11)0.0590 (4)
O20.70387 (10)−0.06373 (16)−0.00402 (11)0.0623 (4)
O30.62843 (10)−0.24718 (13)0.05467 (11)0.0670 (4)
O40.51579 (10)−0.22474 (13)0.13984 (11)0.0615 (4)
O50.37521 (14)0.47962 (17)0.02876 (13)0.0709 (5)
N10.36496 (10)0.39448 (14)0.24957 (9)0.0414 (4)
N20.47286 (10)0.24704 (13)0.16032 (9)0.0364 (3)
C10.31145 (14)0.4780 (2)0.28233 (14)0.0525 (5)
H1A0.33290.54400.31440.063*
C20.22455 (15)0.4697 (2)0.27010 (15)0.0625 (6)
H2A0.18890.53110.29190.075*
C30.19182 (15)0.3703 (2)0.22564 (16)0.0643 (6)
H3A0.13370.36150.21900.077*
C40.24669 (13)0.2838 (2)0.19101 (14)0.0537 (5)
H4A0.22620.21580.16030.064*
C50.33299 (12)0.30015 (17)0.20284 (12)0.0416 (4)
C60.39452 (12)0.21815 (16)0.16127 (12)0.0415 (4)
H6A0.37650.14450.13540.050*
C70.53077 (12)0.16496 (16)0.11906 (11)0.0363 (4)
C80.59723 (12)0.21657 (17)0.07233 (12)0.0458 (4)
H8A0.60340.30290.06950.055*
C90.65391 (13)0.14022 (19)0.03025 (13)0.0507 (5)
H9A0.69770.1753−0.00140.061*
C100.64583 (12)0.01035 (18)0.03502 (13)0.0444 (4)
C110.57989 (11)−0.04244 (16)0.08294 (12)0.0386 (4)
C120.52303 (11)0.03585 (16)0.12417 (11)0.0374 (4)
H12A0.47900.00130.15580.045*
C130.57306 (13)−0.18215 (17)0.09375 (13)0.0470 (5)
H10.5058 (16)0.606 (3)0.152 (2)0.081 (10)*
H20.4595 (18)0.517 (3)0.1115 (18)0.083 (9)*
H30.3812 (19)0.417 (3)−0.005 (2)0.084 (9)*
H40.326 (2)0.507 (3)0.025 (2)0.124 (14)*
H50.685 (2)−0.146 (3)0.009 (2)0.117 (11)*
U11U22U33U12U13U23
Zn10.04294 (17)0.02329 (15)0.04715 (18)0.000−0.00043 (13)0.000
O10.0828 (11)0.0317 (8)0.0625 (9)−0.0157 (8)−0.0203 (9)0.0127 (7)
O20.0562 (9)0.0523 (9)0.0785 (11)−0.0026 (7)0.0186 (8)−0.0231 (8)
O30.0642 (9)0.0356 (8)0.1011 (12)0.0057 (7)0.0064 (9)−0.0178 (8)
O40.0744 (11)0.0280 (7)0.0820 (11)−0.0052 (7)0.0102 (8)0.0028 (7)
O50.0746 (12)0.0529 (10)0.0851 (12)0.0051 (9)−0.0225 (10)−0.0171 (9)
N10.0442 (8)0.0357 (8)0.0443 (8)0.0064 (6)0.0028 (7)0.0041 (7)
N20.0446 (8)0.0241 (7)0.0406 (8)0.0009 (6)0.0000 (6)0.0006 (6)
C10.0608 (13)0.0453 (12)0.0514 (11)0.0133 (10)0.0115 (10)0.0046 (9)
C20.0562 (13)0.0630 (15)0.0684 (15)0.0221 (11)0.0210 (11)0.0172 (12)
C30.0452 (12)0.0712 (16)0.0764 (15)0.0103 (11)0.0067 (11)0.0232 (13)
C40.0462 (11)0.0533 (12)0.0616 (13)−0.0023 (9)−0.0050 (10)0.0108 (10)
C50.0427 (10)0.0356 (9)0.0466 (10)0.0005 (8)−0.0012 (8)0.0081 (8)
C60.0466 (11)0.0302 (9)0.0477 (10)−0.0031 (8)−0.0059 (8)−0.0008 (8)
C70.0402 (9)0.0283 (9)0.0404 (9)−0.0013 (7)−0.0009 (8)−0.0014 (7)
C80.0593 (12)0.0284 (9)0.0497 (10)−0.0078 (8)0.0067 (9)−0.0001 (8)
C90.0572 (12)0.0423 (11)0.0525 (11)−0.0125 (9)0.0166 (10)−0.0025 (9)
C100.0457 (10)0.0416 (10)0.0459 (10)−0.0015 (8)0.0015 (9)−0.0118 (8)
C110.0429 (10)0.0285 (8)0.0443 (10)−0.0031 (7)−0.0054 (8)−0.0039 (7)
C120.0394 (9)0.0290 (9)0.0438 (10)−0.0047 (7)−0.0017 (7)0.0000 (7)
C130.0533 (12)0.0284 (9)0.0593 (12)0.0014 (8)−0.0092 (10)−0.0067 (9)
Zn1—O1i2.0471 (15)C1—H1A0.9300
Zn1—O12.0471 (15)C2—C31.372 (4)
Zn1—N1i2.1414 (17)C2—H2A0.9300
Zn1—N12.1414 (17)C3—C41.379 (3)
Zn1—N22.2746 (14)C3—H3A0.9300
Zn1—N2i2.2746 (14)C4—C51.388 (3)
O1—H10.81 (3)C4—H4A0.9300
O1—H20.84 (3)C5—C61.462 (3)
O2—C101.357 (2)C6—H6A0.9300
O2—H50.95 (3)C7—C121.389 (2)
O3—C131.274 (2)C7—C81.394 (3)
O4—C131.244 (2)C8—C91.380 (3)
O5—H30.86 (3)C8—H8A0.9300
O5—H40.84 (4)C9—C101.397 (3)
N1—C11.333 (2)C9—H9A0.9300
N1—C51.344 (2)C10—C111.403 (3)
N2—C61.277 (2)C11—C121.388 (2)
N2—C71.423 (2)C11—C131.508 (2)
C1—C21.390 (3)C12—H12A0.9300
O1i—Zn1—O199.88 (10)C2—C3—H3A120.6
O1i—Zn1—N1i90.66 (6)C4—C3—H3A120.6
O1—Zn1—N1i94.92 (7)C3—C4—C5118.8 (2)
O1i—Zn1—N194.92 (7)C3—C4—H4A120.6
O1—Zn1—N190.66 (6)C5—C4—H4A120.6
N1i—Zn1—N1171.34 (8)N1—C5—C4122.45 (18)
O1i—Zn1—N2165.91 (6)N1—C5—C6116.20 (16)
O1—Zn1—N290.80 (6)C4—C5—C6121.29 (18)
N1i—Zn1—N297.61 (5)N2—C6—C5120.37 (16)
N1—Zn1—N275.65 (6)N2—C6—H6A119.8
O1i—Zn1—N2i90.80 (6)C5—C6—H6A119.8
O1—Zn1—N2i165.91 (6)C12—C7—C8119.37 (17)
N1i—Zn1—N2i75.65 (6)C12—C7—N2122.05 (16)
N1—Zn1—N2i97.61 (5)C8—C7—N2118.58 (15)
N2—Zn1—N2i80.29 (7)C9—C8—C7120.36 (17)
Zn1—O1—H1126 (2)C9—C8—H8A119.8
Zn1—O1—H2115.9 (19)C7—C8—H8A119.8
H1—O1—H2111 (3)C8—C9—C10120.25 (17)
C10—O2—H5103 (2)C8—C9—H9A119.9
H3—O5—H4109 (3)C10—C9—H9A119.9
C1—N1—C5118.25 (18)O2—C10—C9119.64 (18)
C1—N1—Zn1125.53 (15)O2—C10—C11120.52 (18)
C5—N1—Zn1115.68 (12)C9—C10—C11119.79 (17)
C6—N2—C7118.70 (15)C12—C11—C10119.14 (16)
C6—N2—Zn1111.15 (12)C12—C11—C13119.98 (17)
C7—N2—Zn1129.02 (12)C10—C11—C13120.80 (17)
N1—C1—C2122.1 (2)C11—C12—C7121.09 (17)
N1—C1—H1A118.9C11—C12—H12A119.5
C2—C1—H1A118.9C7—C12—H12A119.5
C3—C2—C1119.5 (2)O4—C13—O3125.32 (18)
C3—C2—H2A120.3O4—C13—C11118.69 (17)
C1—C2—H2A120.3O3—C13—C11115.98 (18)
C2—C3—C4118.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4ii0.80 (3)1.83 (3)2.618 (2)169 (3)
O1—H2···O50.84 (3)1.90 (3)2.744 (3)178 (3)
O5—H3···O3iii0.86 (3)1.98 (3)2.808 (2)161 (3)
O5—H4···O2iv0.83 (3)2.05 (3)2.881 (3)174 (3)
O2—H5···O30.95 (3)1.58 (3)2.473 (2)156 (3)
C6—H6A···O2iii0.932.573.346 (3)142
Table 1

Selected bond lengths (Å)

Zn1—O12.0471 (15)
Zn1—N12.1414 (17)
Zn1—N22.2746 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.80 (3)1.83 (3)2.618 (2)169 (3)
O1—H2⋯O50.84 (3)1.90 (3)2.744 (3)178 (3)
O5—H3⋯O3ii0.86 (3)1.98 (3)2.808 (2)161 (3)
O5—H4⋯O2iii0.83 (3)2.05 (3)2.881 (3)174 (3)
O2—H5⋯O30.95 (3)1.58 (3)2.473 (2)156 (3)
C6—H6A⋯O2ii0.932.573.346 (3)142

Symmetry codes: (i) ; (ii) ; (iii) .

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