Literature DB >> 21589167

N-Benzyl-2,3,4,5,6-penta-fluoro-benz-amide.

Arto Valkonen1, Tanja Lahtinen, Kari Rissanen.   

Abstract

In the title compound, C(14)H(8)F(5)NO, the dihedral angle between the planes of the penta-fluoro-phenyl and phenyl rings is 18.34 (5)°. An inter-molecular N-H⋯O hydrogen bond between the amide groups connects these mol-ecules to form an infinite chain through the crystal structure. One weak intermolecular C-H⋯O contact and one π-π interaction [centroid-centroid distance = 3.772 (3) Å] are also involved in crystal structure stabilization between the phenyl rings.

Entities:  

Year:  2010        PMID: 21589167      PMCID: PMC3009089          DOI: 10.1107/S1600536810043345

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: An & Rhee (2003 ▶); Cockroft et al. (2007 ▶); Forbes et al. (2001 ▶); Liu et al. (2007 ▶); Qadeer et al. (2007 ▶); Zhang & Zhang (2008 ▶). For anion⋯π inter­actions, see: Albrecht et al. (2010 ▶); Lahtinen & Rissanen (2007 ▶); Müller et al. (2010 ▶).

Experimental

Crystal data

C14H8F5NO M = 301.21 Monoclinic, a = 7.1649 (2) Å b = 22.9090 (5) Å c = 7.5363 (1) Å β = 99.205 (2)° V = 1221.08 (5) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 123 K 0.40 × 0.28 × 0.26 mm

Data collection

Bruker Nonius KappaCCD with APEXII detector diffractometer 4246 measured reflections 2152 independent reflections 1891 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.06 2152 reflections 193 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.18 e Å−3 Data collection: COLLECT (Bruker, 2008 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043345/bt5380sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043345/bt5380Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8F5NOF(000) = 608
Mr = 301.21Dx = 1.638 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 7.1649 (2) ÅCell parameters from 3094 reflections
b = 22.9090 (5) Åθ = 0.4–28.3°
c = 7.5363 (1) ŵ = 0.16 mm1
β = 99.205 (2)°T = 123 K
V = 1221.08 (5) Å3Block, colourless
Z = 40.40 × 0.28 × 0.26 mm
Bruker Nonius KappaCCD with APEXII detector diffractometer1891 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.016
graphiteθmax = 25.0°, θmin = 2.9°
Detector resolution: 9 pixels mm-1h = −8→8
φ and ω scansk = −27→27
4246 measured reflectionsl = −8→8
2152 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0393P)2 + 0.498P] where P = (Fo2 + 2Fc2)/3
2152 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.20 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.11992 (14)0.19154 (4)−0.04946 (11)0.0315 (2)
F20.17000 (14)0.07495 (4)−0.05119 (12)0.0350 (3)
F30.14683 (15)0.01169 (4)0.24882 (14)0.0379 (3)
F40.06766 (15)0.06526 (4)0.54949 (12)0.0363 (3)
F50.00325 (13)0.18090 (4)0.54897 (11)0.0277 (2)
O1−0.10620 (15)0.27306 (4)0.12572 (13)0.0260 (3)
N80.12659 (19)0.28716 (5)0.36339 (16)0.0232 (3)
H80.218 (2)0.2705 (7)0.437 (2)0.028*
C10.1073 (2)0.37470 (6)0.55552 (19)0.0207 (3)
C20.1399 (2)0.43426 (7)0.5826 (2)0.0240 (3)
H20.16520.45790.48560.029*
C30.1359 (2)0.45945 (7)0.7488 (2)0.0278 (4)
H30.15700.50020.76490.033*
C40.1011 (2)0.42535 (7)0.8916 (2)0.0277 (4)
H40.09830.44251.00590.033*
C50.0703 (2)0.36600 (7)0.8668 (2)0.0262 (4)
H50.04740.34240.96480.031*
C60.0729 (2)0.34078 (7)0.6995 (2)0.0226 (3)
H60.05090.30010.68350.027*
C70.1041 (2)0.35043 (6)0.3685 (2)0.0262 (4)
H7A−0.01740.36120.29350.031*
H7B0.20680.36890.31490.031*
C90.0197 (2)0.25426 (6)0.24216 (18)0.0197 (3)
C100.0625 (2)0.18984 (6)0.25080 (18)0.0197 (3)
C110.1035 (2)0.16115 (7)0.09949 (19)0.0224 (3)
C120.1315 (2)0.10168 (7)0.0975 (2)0.0249 (4)
C130.1202 (2)0.06950 (7)0.2499 (2)0.0258 (4)
C140.0806 (2)0.09667 (7)0.4021 (2)0.0253 (4)
C150.0511 (2)0.15619 (7)0.40118 (19)0.0215 (3)
U11U22U33U12U13U23
F10.0414 (6)0.0350 (5)0.0190 (5)−0.0003 (4)0.0075 (4)0.0023 (4)
F20.0382 (6)0.0351 (5)0.0326 (5)0.0004 (4)0.0089 (4)−0.0129 (4)
F30.0420 (6)0.0199 (5)0.0515 (6)0.0005 (4)0.0070 (5)−0.0003 (4)
F40.0463 (6)0.0303 (5)0.0315 (5)−0.0016 (4)0.0039 (4)0.0131 (4)
F50.0343 (5)0.0314 (5)0.0176 (4)−0.0017 (4)0.0050 (4)−0.0009 (4)
O10.0271 (6)0.0248 (6)0.0223 (5)−0.0011 (5)−0.0072 (5)0.0037 (4)
N80.0258 (7)0.0204 (7)0.0203 (6)0.0035 (5)−0.0057 (5)−0.0006 (5)
C10.0169 (7)0.0222 (8)0.0215 (7)0.0018 (6)−0.0015 (6)0.0001 (6)
C20.0239 (8)0.0241 (8)0.0232 (8)−0.0008 (6)0.0016 (6)0.0022 (6)
C30.0255 (8)0.0233 (8)0.0333 (9)−0.0014 (7)0.0006 (7)−0.0045 (7)
C40.0249 (9)0.0354 (9)0.0227 (8)0.0027 (7)0.0034 (6)−0.0067 (7)
C50.0217 (8)0.0350 (9)0.0222 (8)0.0016 (7)0.0046 (6)0.0041 (6)
C60.0209 (8)0.0201 (7)0.0256 (8)0.0005 (6)0.0001 (6)0.0019 (6)
C70.0345 (9)0.0212 (8)0.0212 (8)0.0008 (7)−0.0004 (6)0.0009 (6)
C90.0191 (8)0.0242 (8)0.0158 (7)−0.0019 (6)0.0025 (6)0.0024 (6)
C100.0148 (7)0.0243 (8)0.0186 (7)−0.0017 (6)−0.0020 (5)−0.0001 (6)
C110.0193 (8)0.0288 (8)0.0184 (7)−0.0028 (6)0.0006 (6)0.0028 (6)
C120.0188 (8)0.0291 (8)0.0262 (8)−0.0014 (6)0.0017 (6)−0.0074 (7)
C130.0212 (8)0.0192 (8)0.0355 (9)−0.0010 (6)0.0000 (7)−0.0002 (6)
C140.0229 (8)0.0260 (8)0.0256 (8)−0.0031 (6)−0.0002 (6)0.0074 (6)
C150.0183 (8)0.0269 (8)0.0183 (7)−0.0018 (6)−0.0008 (6)−0.0014 (6)
F1—C111.3419 (17)C3—H30.9500
F2—C121.3439 (18)C4—C51.385 (2)
F3—C131.3381 (18)C4—H40.9500
F4—C141.3393 (17)C5—C61.390 (2)
F5—C151.3418 (17)C5—H50.9500
O1—C91.2313 (17)C6—H60.9500
N8—C91.3287 (19)C7—H7A0.9900
N8—C71.4596 (19)C7—H7B0.9900
N8—H80.876 (14)C9—C101.507 (2)
C1—C61.388 (2)C10—C151.384 (2)
C1—C21.394 (2)C10—C111.388 (2)
C1—C71.512 (2)C11—C121.377 (2)
C2—C31.383 (2)C12—C131.378 (2)
C2—H20.9500C13—C141.374 (2)
C3—C41.385 (2)C14—C151.380 (2)
C9—N8—C7121.84 (13)N8—C7—H7B108.8
C9—N8—H8118.6 (11)C1—C7—H7B108.8
C7—N8—H8119.4 (11)H7A—C7—H7B107.7
C6—C1—C2118.69 (14)O1—C9—N8124.59 (14)
C6—C1—C7122.99 (13)O1—C9—C10119.63 (13)
C2—C1—C7118.28 (13)N8—C9—C10115.78 (12)
C3—C2—C1120.92 (14)C15—C10—C11117.21 (14)
C3—C2—H2119.5C15—C10—C9122.86 (13)
C1—C2—H2119.5C11—C10—C9119.79 (13)
C2—C3—C4120.05 (14)F1—C11—C12118.15 (13)
C2—C3—H3120.0F1—C11—C10120.00 (14)
C4—C3—H3120.0C12—C11—C10121.84 (14)
C3—C4—C5119.56 (14)F2—C12—C11120.61 (14)
C3—C4—H4120.2F2—C12—C13119.90 (14)
C5—C4—H4120.2C11—C12—C13119.49 (14)
C4—C5—C6120.37 (14)F3—C13—C14120.15 (14)
C4—C5—H5119.8F3—C13—C12119.81 (14)
C6—C5—H5119.8C14—C13—C12120.04 (14)
C1—C6—C5120.40 (14)F4—C14—C13119.99 (14)
C1—C6—H6119.8F4—C14—C15120.27 (14)
C5—C6—H6119.8C13—C14—C15119.73 (14)
N8—C7—C1113.87 (12)F5—C15—C14118.18 (13)
N8—C7—H7A108.8F5—C15—C10120.08 (13)
C1—C7—H7A108.8C14—C15—C10121.69 (14)
C6—C1—C2—C3−0.8 (2)F1—C11—C12—F2−1.4 (2)
C7—C1—C2—C3177.02 (14)C10—C11—C12—F2179.65 (13)
C1—C2—C3—C40.7 (2)F1—C11—C12—C13178.39 (13)
C2—C3—C4—C50.0 (2)C10—C11—C12—C13−0.6 (2)
C3—C4—C5—C6−0.5 (2)F2—C12—C13—F3−0.3 (2)
C2—C1—C6—C50.3 (2)C11—C12—C13—F3179.87 (14)
C7—C1—C6—C5−177.44 (14)F2—C12—C13—C14−179.91 (14)
C4—C5—C6—C10.4 (2)C11—C12—C13—C140.3 (2)
C9—N8—C7—C1135.84 (15)F3—C13—C14—F4−0.3 (2)
C6—C1—C7—N8−19.9 (2)C12—C13—C14—F4179.26 (13)
C2—C1—C7—N8162.42 (14)F3—C13—C14—C15−179.20 (14)
C7—N8—C9—O1−0.4 (2)C12—C13—C14—C150.4 (2)
C7—N8—C9—C10178.57 (13)F4—C14—C15—F5−2.2 (2)
O1—C9—C10—C15−121.13 (16)C13—C14—C15—F5176.69 (13)
N8—C9—C10—C1559.85 (19)F4—C14—C15—C10−179.71 (13)
O1—C9—C10—C1154.5 (2)C13—C14—C15—C10−0.8 (2)
N8—C9—C10—C11−124.55 (15)C11—C10—C15—F5−176.90 (12)
C15—C10—C11—F1−178.80 (13)C9—C10—C15—F5−1.2 (2)
C9—C10—C11—F15.4 (2)C11—C10—C15—C140.5 (2)
C15—C10—C11—C120.1 (2)C9—C10—C15—C14176.25 (14)
C9—C10—C11—C12−175.70 (14)
D—H···AD—HH···AD···AD—H···A
N8—H8···O1i0.88 (1)2.01 (1)2.875 (2)171 (2)
C5—H5···O1ii0.952.373.276 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N8—H8⋯O1i0.88 (1)2.01 (1)2.875 (2)171 (2)
C5—H5⋯O1ii0.952.373.276 (2)158

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Using pentafluorophenyl as a Lewis acid to stabilize a cis secondary amide conformation.

Authors:  C C Forbes; A M Beatty; B D Smith
Journal:  Org Lett       Date:  2001-11-01       Impact factor: 6.005

2.  Substituent effects on aromatic stacking interactions.

Authors:  Scott L Cockroft; Julie Perkins; Cristiano Zonta; Harry Adams; Sharon E Spey; Caroline M R Low; Jeremy G Vinter; Kevin R Lawson; Christopher J Urch; Christopher A Hunter
Journal:  Org Biomol Chem       Date:  2007-03-07       Impact factor: 3.876

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  CH-directed anion-pi interactions in the crystals of pentafluorobenzyl-substituted ammonium and pyridinium salts.

Authors:  Markus Albrecht; Michael Müller; Olga Mergel; Kari Rissanen; Arto Valkonen
Journal:  Chemistry       Date:  2010-05-03       Impact factor: 5.236

5.  Anion-π interactions in salts with polyhalide anions: trapping of I4(2-).

Authors:  Michael Müller; Markus Albrecht; Verena Gossen; Tanja Peters; Andreas Hoffmann; Gerhard Raabe; Arto Valkonen; Kari Rissanen
Journal:  Chemistry       Date:  2010-11-02       Impact factor: 5.236

6.  N-Benzyl-2-hydroxy-benzamide.

Authors:  Qiu-Xia Zhang; Bi-Song Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-23
  6 in total

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