Literature DB >> 21589153

(-)-(S)-N,N'-Bis[1-(1-naphth-yl)eth-yl]-oxalamide.

Sylvain Bernès, Guadalupe Hernández, Jaime Vázquez, Alejandra Tovar, René Gutiérrez.   

Abstract

The title mol-ecule, C(26)H(24)N(2)O(2), displays C(2) symmetry, with the mol-ecule located on a twofold axis perpendicular to the plane of the oxalamide unit -NH-CO-CO-NH-. The oxalamide core deviates from planarity, as reflected by the O=C-C=O and N-C-C-N torsion angles of 164.3 (5) and 163.2 (5)°, respectively. The naphthyl groups are oriented toward the same face of the oxalamide mean plane and make a dihedral angle of 43.76 (8)°. This conformation is suitable for the formation of inter-molecular N-H⋯O hydrogen bonds, giving noncentrosymmetric dimers incorporating R(2) (2)(10) ring motifs. These nonbonding inter-actions propagate along the 6(1) screw axis normal to the mol-ecular twofold axis, resulting in a single-stranded right-handed helix parallel to [001]. In the crystal, Δ helices are arranged side-by-side and inter-act through π-π contacts between naphthyl groups. The shortest centroid-centroid separation between inter-acting benzene rings is 3.623 (4) Å.

Entities:  

Year:  2010        PMID: 21589153      PMCID: PMC3009003          DOI: 10.1107/S1600536810043424

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of closely related oxalamides, see: Štefanić et al. (2003 ▶); Zhang et al. (2006 ▶); Lee & Wang (2007 ▶); Lee (2010 ▶). For general references on dicarboxamides and oxalamides, and their synthesis under solvent-free conditions, see: Bernès et al. (2008 ▶); Montero-Vázquez et al. (2008 ▶); Jeon et al. (2005 ▶); Noyori (2005 ▶). For helicity assignment in enanti­omorphic space groups, see: Ha & Allewell (1997 ▶).

Experimental

Crystal data

C26H24N2O2 M = 396.47 Hexagonal, a = 11.4489 (11) Å c = 28.350 (4) Å V = 3218.2 (7) Å3 Z = 6 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.40 × 0.22 × 0.20 mm

Data collection

Siemens P4 diffractometer 5314 measured reflections 1208 independent reflections 730 reflections with I > 2σ(I) R int = 0.057 3 standard reflections every 97 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.138 S = 1.11 1208 reflections 141 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.14 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810043424/jh2225sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043424/jh2225Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H24N2O2Dx = 1.227 Mg m3
Mr = 396.47Melting point: 513 K
Hexagonal, P6122Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 61 2 (0 0 -1)Cell parameters from 67 reflections
a = 11.4489 (11) Åθ = 4.1–11.9°
c = 28.350 (4) ŵ = 0.08 mm1
V = 3218.2 (7) Å3T = 298 K
Z = 6Prism, colourless
F(000) = 12600.40 × 0.22 × 0.20 mm
Siemens P4 diffractometerRint = 0.057
Radiation source: fine-focus sealed tubeθmax = 25.1°, θmin = 2.1°
graphiteh = −13→2
ω scansk = −1→13
5314 measured reflectionsl = −33→1
1208 independent reflections3 standard reflections every 97 reflections
730 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0649P)2 + 0.2213P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1208 reflectionsΔρmax = 0.12 e Å3
141 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.011 (2)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O10.1760 (3)0.1496 (2)0.53227 (7)0.0718 (8)
C10.1517 (3)0.0760 (3)0.49767 (11)0.0539 (8)
N20.1898 (3)0.1213 (3)0.45411 (9)0.0594 (8)
H20.168 (3)0.058 (3)0.4311 (9)0.071*
C30.2678 (3)0.2653 (3)0.44315 (11)0.0589 (9)
H3A0.32490.31100.47050.071*
C40.3604 (4)0.2880 (4)0.40144 (13)0.0852 (13)
H4B0.41940.25350.40880.128*
H4C0.41310.38280.39490.128*
H4D0.30720.24200.37430.128*
C50.1787 (4)0.3254 (4)0.43491 (11)0.0632 (10)
C60.0662 (4)0.2582 (5)0.40749 (15)0.0878 (12)
H6A0.04360.17360.39570.105*
C7−0.0158 (6)0.3123 (7)0.39661 (18)0.1117 (17)
H7A−0.09070.26510.37730.134*
C80.0142 (6)0.4343 (7)0.4144 (2)0.1100 (17)
H8B−0.04200.46920.40790.132*
C90.1289 (6)0.5082 (5)0.44246 (16)0.0855 (13)
C100.1624 (8)0.6363 (6)0.4601 (2)0.119 (2)
H10B0.10740.67210.45290.143*
C110.2721 (8)0.7080 (6)0.4873 (2)0.126 (2)
H11D0.29110.79130.49930.151*
C120.3575 (6)0.6564 (5)0.49739 (19)0.1110 (17)
H12B0.43430.70680.51560.133*
C130.3293 (5)0.5332 (4)0.48084 (13)0.0781 (12)
H13B0.38680.50030.48810.094*
C140.2145 (4)0.4552 (4)0.45291 (12)0.0660 (10)
U11U22U33U12U13U23
O10.0854 (19)0.0634 (16)0.0510 (13)0.0256 (14)0.0089 (12)−0.0117 (12)
C10.055 (2)0.0567 (19)0.0495 (17)0.0279 (17)0.0013 (16)−0.0044 (19)
N20.071 (2)0.0555 (19)0.0477 (15)0.0284 (16)0.0035 (15)−0.0042 (13)
C30.063 (2)0.056 (2)0.0540 (18)0.0272 (19)0.0031 (17)−0.0023 (16)
C40.088 (3)0.084 (3)0.081 (2)0.041 (3)0.032 (2)0.011 (2)
C50.068 (3)0.068 (3)0.0532 (18)0.033 (2)0.0073 (19)0.0067 (19)
C60.087 (3)0.093 (3)0.087 (3)0.048 (3)−0.015 (3)−0.001 (3)
C70.097 (4)0.136 (5)0.113 (4)0.067 (4)−0.017 (3)0.014 (4)
C80.108 (4)0.136 (5)0.120 (4)0.087 (4)0.018 (4)0.035 (4)
C90.104 (4)0.087 (3)0.081 (3)0.060 (3)0.034 (3)0.026 (3)
C100.175 (7)0.104 (4)0.116 (4)0.098 (5)0.066 (4)0.037 (4)
C110.178 (7)0.073 (4)0.128 (5)0.065 (4)0.061 (5)0.013 (3)
C120.129 (5)0.065 (3)0.110 (3)0.027 (3)0.030 (4)−0.003 (3)
C130.089 (3)0.058 (3)0.075 (2)0.028 (2)0.015 (2)−0.002 (2)
C140.078 (3)0.063 (2)0.0587 (19)0.036 (2)0.025 (2)0.014 (2)
O1—C11.231 (4)C7—C81.358 (7)
C1—N21.326 (4)C7—H7A0.9300
C1—C1i1.512 (7)C8—C91.400 (7)
N2—C31.463 (4)C8—H8B0.9300
N2—H20.911 (10)C9—C101.409 (7)
C3—C51.506 (5)C9—C141.418 (6)
C3—C41.522 (5)C10—C111.348 (8)
C3—H3A0.9800C10—H10B0.9300
C4—H4B0.9600C11—C121.401 (7)
C4—H4C0.9600C11—H11D0.9300
C4—H4D0.9600C12—C131.363 (6)
C5—C61.366 (5)C12—H12B0.9300
C5—C141.424 (5)C13—C141.406 (6)
C6—C71.394 (6)C13—H13B0.9300
C6—H6A0.9300
O1—C1—N2123.8 (3)C8—C7—C6119.6 (5)
O1—C1—C1i121.4 (4)C8—C7—H7A120.2
N2—C1—C1i114.8 (3)C6—C7—H7A120.2
C1—N2—C3122.3 (3)C7—C8—C9120.8 (5)
C1—N2—H2117 (2)C7—C8—H8B119.6
C3—N2—H2121 (2)C9—C8—H8B119.6
N2—C3—C5112.1 (3)C8—C9—C10121.0 (6)
N2—C3—C4109.8 (3)C8—C9—C14120.0 (4)
C5—C3—C4112.0 (3)C10—C9—C14119.0 (5)
N2—C3—H3A107.6C11—C10—C9121.5 (6)
C5—C3—H3A107.6C11—C10—H10B119.2
C4—C3—H3A107.6C9—C10—H10B119.2
C3—C4—H4B109.5C10—C11—C12119.6 (6)
C3—C4—H4C109.5C10—C11—H11D120.2
H4B—C4—H4C109.5C12—C11—H11D120.2
C3—C4—H4D109.5C13—C12—C11120.8 (6)
H4B—C4—H4D109.5C13—C12—H12B119.6
H4C—C4—H4D109.5C11—C12—H12B119.6
C6—C5—C14119.4 (4)C12—C13—C14120.9 (5)
C6—C5—C3119.6 (3)C12—C13—H13B119.6
C14—C5—C3120.9 (3)C14—C13—H13B119.6
C5—C6—C7122.0 (5)C13—C14—C9118.2 (4)
C5—C6—H6A119.0C13—C14—C5123.7 (4)
C7—C6—H6A119.0C9—C14—C5118.1 (4)
O1—C1—N2—C31.3 (5)C8—C9—C10—C11179.7 (5)
O1—C1—C1i—O1i164.3 (5)C14—C9—C10—C11−1.2 (7)
C1i—C1—N2—C3−178.1 (2)C9—C10—C11—C121.7 (8)
C1—N2—C3—C5−86.9 (4)C10—C11—C12—C13−1.4 (8)
C1—N2—C3—C4148.0 (3)C11—C12—C13—C140.5 (7)
N2—C3—C5—C6−44.7 (4)C12—C13—C14—C90.0 (5)
N2—C1—C1i—N2i163.2 (5)C12—C13—C14—C5−179.4 (4)
C4—C3—C5—C679.2 (4)C8—C9—C14—C13179.4 (4)
N2—C3—C5—C14139.2 (3)C10—C9—C14—C130.3 (5)
C4—C3—C5—C14−96.9 (4)C8—C9—C14—C5−1.2 (5)
C14—C5—C6—C7−0.3 (6)C10—C9—C14—C5179.8 (4)
C3—C5—C6—C7−176.5 (4)C6—C5—C14—C13−179.0 (3)
C5—C6—C7—C8−1.5 (8)C3—C5—C14—C13−2.9 (5)
C6—C7—C8—C91.9 (8)C6—C5—C14—C91.6 (5)
C7—C8—C9—C10178.5 (5)C3—C5—C14—C9177.7 (3)
C7—C8—C9—C14−0.6 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1ii0.91 (1)2.06 (2)2.931 (3)161 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.91 (1)2.06 (2)2.931 (3)161 (3)

Symmetry code: (i) .

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2.  Pursuing practical elegance in chemical synthesis.

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5.  Hydrogen bonding in N,N'-bis[(1S)-2-azido-1-(2-methylpropyl)ethyl]oxalamide: twofold symmetry of R(2)(2)(10) hydrogen-bonded dimers connected into an alpha-network.

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