| Literature DB >> 21589153 |
Sylvain Bernès, Guadalupe Hernández, Jaime Vázquez, Alejandra Tovar, René Gutiérrez.
Abstract
The title mol-ecule, C(26)H(24)N(2)O(2), displays C(2) symmetry, with the mol-ecule located on a twofold axis perpendicular to the plane of the oxalamide unit -NH-CO-CO-NH-. The oxalamide core deviates from planarity, as reflected by the O=C-C=O and N-C-C-N torsion angles of 164.3 (5) and 163.2 (5)°, respectively. The naphthyl groups are oriented toward the same face of the oxalamide mean plane and make a dihedral angle of 43.76 (8)°. This conformation is suitable for the formation of inter-molecular N-H⋯O hydrogen bonds, giving noncentrosymmetric dimers incorporating R(2) (2)(10) ring motifs. These nonbonding inter-actions propagate along the 6(1) screw axis normal to the mol-ecular twofold axis, resulting in a single-stranded right-handed helix parallel to [001]. In the crystal, Δ helices are arranged side-by-side and inter-act through π-π contacts between naphthyl groups. The shortest centroid-centroid separation between inter-acting benzene rings is 3.623 (4) Å.Entities:
Year: 2010 PMID: 21589153 PMCID: PMC3009003 DOI: 10.1107/S1600536810043424
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C26H24N2O2 | |
| Melting point: 513 K | |
| Hexagonal, | Mo |
| Hall symbol: P 61 2 (0 0 -1) | Cell parameters from 67 reflections |
| θ = 4.1–11.9° | |
| µ = 0.08 mm−1 | |
| Prism, colourless | |
| 0.40 × 0.22 × 0.20 mm |
| Siemens P4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 25.1°, θmin = 2.1° |
| graphite | |
| ω scans | |
| 5314 measured reflections | |
| 1208 independent reflections | 3 standard reflections every 97 reflections |
| 730 reflections with | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1208 reflections | Δρmax = 0.12 e Å−3 |
| 141 parameters | Δρmin = −0.14 e Å−3 |
| 1 restraint | Extinction correction: |
| 0 constraints | Extinction coefficient: 0.011 (2) |
| Primary atom site location: structure-invariant direct methods |
| O1 | 0.1760 (3) | 0.1496 (2) | 0.53227 (7) | 0.0718 (8) | |
| C1 | 0.1517 (3) | 0.0760 (3) | 0.49767 (11) | 0.0539 (8) | |
| N2 | 0.1898 (3) | 0.1213 (3) | 0.45411 (9) | 0.0594 (8) | |
| H2 | 0.168 (3) | 0.058 (3) | 0.4311 (9) | 0.071* | |
| C3 | 0.2678 (3) | 0.2653 (3) | 0.44315 (11) | 0.0589 (9) | |
| H3A | 0.3249 | 0.3110 | 0.4705 | 0.071* | |
| C4 | 0.3604 (4) | 0.2880 (4) | 0.40144 (13) | 0.0852 (13) | |
| H4B | 0.4194 | 0.2535 | 0.4088 | 0.128* | |
| H4C | 0.4131 | 0.3828 | 0.3949 | 0.128* | |
| H4D | 0.3072 | 0.2420 | 0.3743 | 0.128* | |
| C5 | 0.1787 (4) | 0.3254 (4) | 0.43491 (11) | 0.0632 (10) | |
| C6 | 0.0662 (4) | 0.2582 (5) | 0.40749 (15) | 0.0878 (12) | |
| H6A | 0.0436 | 0.1736 | 0.3957 | 0.105* | |
| C7 | −0.0158 (6) | 0.3123 (7) | 0.39661 (18) | 0.1117 (17) | |
| H7A | −0.0907 | 0.2651 | 0.3773 | 0.134* | |
| C8 | 0.0142 (6) | 0.4343 (7) | 0.4144 (2) | 0.1100 (17) | |
| H8B | −0.0420 | 0.4692 | 0.4079 | 0.132* | |
| C9 | 0.1289 (6) | 0.5082 (5) | 0.44246 (16) | 0.0855 (13) | |
| C10 | 0.1624 (8) | 0.6363 (6) | 0.4601 (2) | 0.119 (2) | |
| H10B | 0.1074 | 0.6721 | 0.4529 | 0.143* | |
| C11 | 0.2721 (8) | 0.7080 (6) | 0.4873 (2) | 0.126 (2) | |
| H11D | 0.2911 | 0.7913 | 0.4993 | 0.151* | |
| C12 | 0.3575 (6) | 0.6564 (5) | 0.49739 (19) | 0.1110 (17) | |
| H12B | 0.4343 | 0.7068 | 0.5156 | 0.133* | |
| C13 | 0.3293 (5) | 0.5332 (4) | 0.48084 (13) | 0.0781 (12) | |
| H13B | 0.3868 | 0.5003 | 0.4881 | 0.094* | |
| C14 | 0.2145 (4) | 0.4552 (4) | 0.45291 (12) | 0.0660 (10) |
| O1 | 0.0854 (19) | 0.0634 (16) | 0.0510 (13) | 0.0256 (14) | 0.0089 (12) | −0.0117 (12) |
| C1 | 0.055 (2) | 0.0567 (19) | 0.0495 (17) | 0.0279 (17) | 0.0013 (16) | −0.0044 (19) |
| N2 | 0.071 (2) | 0.0555 (19) | 0.0477 (15) | 0.0284 (16) | 0.0035 (15) | −0.0042 (13) |
| C3 | 0.063 (2) | 0.056 (2) | 0.0540 (18) | 0.0272 (19) | 0.0031 (17) | −0.0023 (16) |
| C4 | 0.088 (3) | 0.084 (3) | 0.081 (2) | 0.041 (3) | 0.032 (2) | 0.011 (2) |
| C5 | 0.068 (3) | 0.068 (3) | 0.0532 (18) | 0.033 (2) | 0.0073 (19) | 0.0067 (19) |
| C6 | 0.087 (3) | 0.093 (3) | 0.087 (3) | 0.048 (3) | −0.015 (3) | −0.001 (3) |
| C7 | 0.097 (4) | 0.136 (5) | 0.113 (4) | 0.067 (4) | −0.017 (3) | 0.014 (4) |
| C8 | 0.108 (4) | 0.136 (5) | 0.120 (4) | 0.087 (4) | 0.018 (4) | 0.035 (4) |
| C9 | 0.104 (4) | 0.087 (3) | 0.081 (3) | 0.060 (3) | 0.034 (3) | 0.026 (3) |
| C10 | 0.175 (7) | 0.104 (4) | 0.116 (4) | 0.098 (5) | 0.066 (4) | 0.037 (4) |
| C11 | 0.178 (7) | 0.073 (4) | 0.128 (5) | 0.065 (4) | 0.061 (5) | 0.013 (3) |
| C12 | 0.129 (5) | 0.065 (3) | 0.110 (3) | 0.027 (3) | 0.030 (4) | −0.003 (3) |
| C13 | 0.089 (3) | 0.058 (3) | 0.075 (2) | 0.028 (2) | 0.015 (2) | −0.002 (2) |
| C14 | 0.078 (3) | 0.063 (2) | 0.0587 (19) | 0.036 (2) | 0.025 (2) | 0.014 (2) |
| O1—C1 | 1.231 (4) | C7—C8 | 1.358 (7) |
| C1—N2 | 1.326 (4) | C7—H7A | 0.9300 |
| C1—C1i | 1.512 (7) | C8—C9 | 1.400 (7) |
| N2—C3 | 1.463 (4) | C8—H8B | 0.9300 |
| N2—H2 | 0.911 (10) | C9—C10 | 1.409 (7) |
| C3—C5 | 1.506 (5) | C9—C14 | 1.418 (6) |
| C3—C4 | 1.522 (5) | C10—C11 | 1.348 (8) |
| C3—H3A | 0.9800 | C10—H10B | 0.9300 |
| C4—H4B | 0.9600 | C11—C12 | 1.401 (7) |
| C4—H4C | 0.9600 | C11—H11D | 0.9300 |
| C4—H4D | 0.9600 | C12—C13 | 1.363 (6) |
| C5—C6 | 1.366 (5) | C12—H12B | 0.9300 |
| C5—C14 | 1.424 (5) | C13—C14 | 1.406 (6) |
| C6—C7 | 1.394 (6) | C13—H13B | 0.9300 |
| C6—H6A | 0.9300 | ||
| O1—C1—N2 | 123.8 (3) | C8—C7—C6 | 119.6 (5) |
| O1—C1—C1i | 121.4 (4) | C8—C7—H7A | 120.2 |
| N2—C1—C1i | 114.8 (3) | C6—C7—H7A | 120.2 |
| C1—N2—C3 | 122.3 (3) | C7—C8—C9 | 120.8 (5) |
| C1—N2—H2 | 117 (2) | C7—C8—H8B | 119.6 |
| C3—N2—H2 | 121 (2) | C9—C8—H8B | 119.6 |
| N2—C3—C5 | 112.1 (3) | C8—C9—C10 | 121.0 (6) |
| N2—C3—C4 | 109.8 (3) | C8—C9—C14 | 120.0 (4) |
| C5—C3—C4 | 112.0 (3) | C10—C9—C14 | 119.0 (5) |
| N2—C3—H3A | 107.6 | C11—C10—C9 | 121.5 (6) |
| C5—C3—H3A | 107.6 | C11—C10—H10B | 119.2 |
| C4—C3—H3A | 107.6 | C9—C10—H10B | 119.2 |
| C3—C4—H4B | 109.5 | C10—C11—C12 | 119.6 (6) |
| C3—C4—H4C | 109.5 | C10—C11—H11D | 120.2 |
| H4B—C4—H4C | 109.5 | C12—C11—H11D | 120.2 |
| C3—C4—H4D | 109.5 | C13—C12—C11 | 120.8 (6) |
| H4B—C4—H4D | 109.5 | C13—C12—H12B | 119.6 |
| H4C—C4—H4D | 109.5 | C11—C12—H12B | 119.6 |
| C6—C5—C14 | 119.4 (4) | C12—C13—C14 | 120.9 (5) |
| C6—C5—C3 | 119.6 (3) | C12—C13—H13B | 119.6 |
| C14—C5—C3 | 120.9 (3) | C14—C13—H13B | 119.6 |
| C5—C6—C7 | 122.0 (5) | C13—C14—C9 | 118.2 (4) |
| C5—C6—H6A | 119.0 | C13—C14—C5 | 123.7 (4) |
| C7—C6—H6A | 119.0 | C9—C14—C5 | 118.1 (4) |
| O1—C1—N2—C3 | 1.3 (5) | C8—C9—C10—C11 | 179.7 (5) |
| O1—C1—C1i—O1i | 164.3 (5) | C14—C9—C10—C11 | −1.2 (7) |
| C1i—C1—N2—C3 | −178.1 (2) | C9—C10—C11—C12 | 1.7 (8) |
| C1—N2—C3—C5 | −86.9 (4) | C10—C11—C12—C13 | −1.4 (8) |
| C1—N2—C3—C4 | 148.0 (3) | C11—C12—C13—C14 | 0.5 (7) |
| N2—C3—C5—C6 | −44.7 (4) | C12—C13—C14—C9 | 0.0 (5) |
| N2—C1—C1i—N2i | 163.2 (5) | C12—C13—C14—C5 | −179.4 (4) |
| C4—C3—C5—C6 | 79.2 (4) | C8—C9—C14—C13 | 179.4 (4) |
| N2—C3—C5—C14 | 139.2 (3) | C10—C9—C14—C13 | 0.3 (5) |
| C4—C3—C5—C14 | −96.9 (4) | C8—C9—C14—C5 | −1.2 (5) |
| C14—C5—C6—C7 | −0.3 (6) | C10—C9—C14—C5 | 179.8 (4) |
| C3—C5—C6—C7 | −176.5 (4) | C6—C5—C14—C13 | −179.0 (3) |
| C5—C6—C7—C8 | −1.5 (8) | C3—C5—C14—C13 | −2.9 (5) |
| C6—C7—C8—C9 | 1.9 (8) | C6—C5—C14—C9 | 1.6 (5) |
| C7—C8—C9—C10 | 178.5 (5) | C3—C5—C14—C9 | 177.7 (3) |
| C7—C8—C9—C14 | −0.6 (7) |
| H··· | ||||
| N2—H2···O1ii | 0.91 (1) | 2.06 (2) | 2.931 (3) | 161 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1i | 0.91 (1) | 2.06 (2) | 2.931 (3) | 161 (3) |
Symmetry code: (i) .