Literature DB >> 21589136

2-[2-(1,3-Dioxoisoindolin-2-yl)acetamido]-acetic acid.

Moazzam H Bhatti, Uzma Yunus, S Shams-Ul-Islam, Wai-Yeung Wong.   

Abstract

The title mol-ecule, C(12)H(10)N(2)O(5), is non-planar with dihedral angles of 89.08 (7) and 83.21 (7)° between the phthalimide and acetamide mean planes, and the acetamide and acetic acid mean planes, respectively. In the crystal, symmetry-related mol-ecules are linked via N-H⋯O and O-H⋯O hydrogen bonds, forming an undulating two-dimensional network. There are also a number of weak C-H⋯O inter-actions, leading to the formation of a three-dimensional arrangement.

Entities:  

Year:  2010        PMID: 21589136      PMCID: PMC3009347          DOI: 10.1107/S1600536810043047

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and biological properties of phthalimides and various derivatives, see: Antunes et al. (1998 ▶); Barooah & Baruah (2007 ▶); Barooah et al. (2006 ▶); Khan et al. (2002 ▶); Sharma et al. (2010 ▶); Yunus et al. (2008 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For bond lengths and angles in the phthalimide group, see: Feeder & Jones (1996 ▶); Ng (1992 ▶).

Experimental

Crystal data

C12H10N2O5 M = 262.22 Monoclinic, a = 4.8195 (5) Å b = 10.3415 (11) Å c = 22.629 (2) Å β = 90.17 (1)° V = 1127.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 173 K 0.34 × 0.24 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.939, T max = 1.000 6788 measured reflections 2731 independent reflections 2533 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.094 S = 1.07 2731 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810043047/su2220sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043047/su2220Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N2O5F(000) = 544
Mr = 262.22Dx = 1.544 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6788 reflections
a = 4.8195 (5) Åθ = 2.7–28.3°
b = 10.3415 (11) ŵ = 0.12 mm1
c = 22.629 (2) ÅT = 173 K
β = 90.17 (1)°Block, colorless
V = 1127.9 (2) Å30.34 × 0.24 × 0.20 mm
Z = 4
Bruker SMART CCD diffractometer2731 independent reflections
Radiation source: fine-focus sealed tube2533 reflections with I > 2σ(I)
graphiteRint = 0.015
ω and φ scansθmax = 28.3°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→6
Tmin = 0.939, Tmax = 1.000k = −6→13
6788 measured reflectionsl = −29→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.037P)2 + 0.579P] where P = (Fo2 + 2Fc2)/3
2731 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.42937 (19)0.17860 (9)0.07903 (4)0.0274 (3)
O20.7194 (2)0.46000 (10)0.04263 (4)0.0338 (3)
O31.11056 (19)0.36795 (9)0.23395 (4)0.0250 (3)
O40.8527 (2)0.07998 (11)0.31666 (4)0.0333 (3)
O51.05382 (19)0.04425 (9)0.22876 (4)0.0264 (3)
N11.0744 (2)0.32888 (10)0.07534 (4)0.0205 (3)
N20.8077 (2)0.25359 (10)0.18003 (4)0.0214 (3)
C11.1901 (3)0.10108 (14)−0.04587 (6)0.0285 (4)
C21.0418 (3)0.09730 (15)−0.09889 (6)0.0336 (4)
C30.8300 (3)0.18476 (15)−0.11078 (6)0.0329 (4)
C40.7551 (3)0.27995 (14)−0.06977 (6)0.0279 (4)
C50.9028 (2)0.28280 (12)−0.01754 (5)0.0223 (3)
C61.1163 (2)0.19590 (12)−0.00576 (5)0.0219 (3)
C71.2343 (2)0.22725 (12)0.05335 (5)0.0208 (3)
C80.8738 (2)0.37080 (12)0.03419 (5)0.0223 (3)
C91.1328 (2)0.39863 (11)0.12934 (5)0.0206 (3)
C101.0158 (2)0.33726 (11)0.18492 (5)0.0190 (3)
C110.6866 (2)0.19718 (13)0.23289 (6)0.0245 (3)
C120.8745 (2)0.10203 (12)0.26443 (5)0.0218 (3)
H1A1.334800.04130−0.037800.0340*
H20.743 (4)0.2331 (18)0.1435 (8)0.037 (5)*
H2A1.086900.03340−0.127500.0400*
H3A0.734300.17980−0.147400.0390*
H4A0.609700.33960−0.077500.0340*
H51.159 (4)−0.018 (2)0.2480 (8)0.043 (5)*
H9A1.056600.487200.125700.0250*
H9B1.336400.406300.133800.0250*
H11A0.512500.152400.221900.0290*
H11B0.637900.267700.260600.0290*
U11U22U33U12U13U23
O10.0269 (4)0.0280 (5)0.0271 (5)0.0052 (4)−0.0068 (4)−0.0024 (4)
O20.0349 (5)0.0362 (5)0.0302 (5)0.0138 (4)−0.0064 (4)−0.0023 (4)
O30.0277 (4)0.0293 (5)0.0180 (4)−0.0050 (4)−0.0041 (3)0.0004 (3)
O40.0375 (5)0.0401 (6)0.0224 (4)0.0032 (4)0.0029 (4)0.0082 (4)
O50.0292 (5)0.0281 (5)0.0218 (4)0.0061 (4)−0.0019 (3)0.0023 (4)
N10.0219 (5)0.0227 (5)0.0168 (4)0.0014 (4)−0.0018 (4)−0.0003 (4)
N20.0225 (5)0.0223 (5)0.0195 (5)−0.0013 (4)−0.0043 (4)0.0029 (4)
C10.0313 (6)0.0291 (7)0.0251 (6)−0.0009 (5)0.0007 (5)−0.0051 (5)
C20.0411 (7)0.0366 (7)0.0232 (6)−0.0061 (6)0.0011 (5)−0.0094 (5)
C30.0370 (7)0.0434 (8)0.0183 (6)−0.0096 (6)−0.0047 (5)−0.0007 (5)
C40.0281 (6)0.0352 (7)0.0205 (6)−0.0041 (5)−0.0039 (5)0.0045 (5)
C50.0235 (5)0.0254 (6)0.0181 (5)−0.0028 (5)0.0002 (4)0.0020 (4)
C60.0227 (5)0.0243 (6)0.0187 (5)−0.0036 (4)−0.0009 (4)0.0002 (4)
C70.0219 (5)0.0209 (5)0.0197 (5)−0.0021 (4)0.0001 (4)−0.0003 (4)
C80.0225 (5)0.0260 (6)0.0185 (5)0.0000 (4)−0.0014 (4)0.0033 (4)
C90.0235 (5)0.0210 (5)0.0173 (5)−0.0016 (4)−0.0013 (4)−0.0008 (4)
C100.0201 (5)0.0186 (5)0.0182 (5)0.0028 (4)−0.0020 (4)0.0003 (4)
C110.0200 (5)0.0275 (6)0.0259 (6)−0.0005 (5)0.0012 (4)0.0054 (5)
C120.0207 (5)0.0219 (6)0.0228 (6)−0.0051 (4)−0.0021 (4)0.0021 (4)
O1—C71.2130 (14)C3—C41.401 (2)
O2—C81.2008 (15)C4—C51.3782 (18)
O3—C101.2399 (14)C5—C81.4896 (17)
O4—C121.2086 (15)C5—C61.3913 (16)
O5—C121.3265 (14)C6—C71.4877 (16)
O5—H50.93 (2)C9—C101.5188 (16)
N1—C81.4087 (14)C11—C121.5146 (17)
N1—C91.4459 (15)C1—H1A0.9500
N1—C71.3959 (15)C2—H2A0.9500
N2—C101.3290 (14)C3—H3A0.9500
N2—C111.4546 (16)C4—H4A0.9500
N2—H20.908 (18)C9—H9A0.9900
C1—C21.395 (2)C9—H9B0.9900
C1—C61.3834 (18)C11—H11A0.9900
C2—C31.390 (2)C11—H11B0.9900
C12—O5—H5112.5 (11)O3—C10—N2121.14 (10)
C7—N1—C9124.79 (9)O3—C10—C9119.83 (10)
C8—N1—C9122.45 (10)N2—C11—C12114.03 (9)
C7—N1—C8112.00 (9)O4—C12—O5124.66 (11)
C10—N2—C11119.81 (10)O4—C12—C11121.99 (11)
C10—N2—H2119.0 (12)O5—C12—C11113.31 (10)
C11—N2—H2121.2 (12)C2—C1—H1A121.00
C2—C1—C6116.87 (13)C6—C1—H1A122.00
C1—C2—C3121.49 (13)C1—C2—H2A119.00
C2—C3—C4121.31 (13)C3—C2—H2A119.00
C3—C4—C5116.72 (13)C2—C3—H3A119.00
C4—C5—C8129.61 (11)C4—C3—H3A119.00
C4—C5—C6122.03 (11)C3—C4—H4A122.00
C6—C5—C8108.37 (9)C5—C4—H4A122.00
C1—C6—C5121.57 (11)N1—C9—H9A109.00
C1—C6—C7130.24 (11)N1—C9—H9B108.00
C5—C6—C7108.18 (10)C10—C9—H9A108.00
N1—C7—C6105.94 (9)C10—C9—H9B109.00
O1—C7—C6129.35 (11)H9A—C9—H9B108.00
O1—C7—N1124.71 (11)N2—C11—H11A109.00
O2—C8—N1123.76 (11)N2—C11—H11B109.00
O2—C8—C5130.84 (10)C12—C11—H11A109.00
N1—C8—C5105.41 (9)C12—C11—H11B109.00
N1—C9—C10114.81 (9)H11A—C11—H11B108.00
N2—C10—C9119.02 (10)
C9—N1—C7—C6−173.65 (10)C3—C4—C5—C8−179.94 (13)
C7—N1—C8—O2−177.27 (11)C3—C4—C5—C60.06 (19)
C9—N1—C8—O2−6.78 (17)C4—C5—C6—C1−0.53 (19)
C7—N1—C8—C52.75 (12)C6—C5—C8—N1−0.90 (12)
C8—N1—C7—O1176.11 (11)C8—C5—C6—C7−1.12 (12)
C9—N1—C7—O15.88 (18)C4—C5—C6—C7178.88 (11)
C8—N1—C7—C6−3.42 (12)C8—C5—C6—C1179.47 (11)
C8—N1—C9—C10104.76 (12)C6—C5—C8—O2179.13 (12)
C9—N1—C8—C5173.24 (9)C4—C5—C8—O2−0.9 (2)
C7—N1—C9—C10−85.99 (12)C4—C5—C8—N1179.11 (12)
C11—N2—C10—O30.39 (17)C1—C6—C7—O12.6 (2)
C11—N2—C10—C9−177.90 (10)C5—C6—C7—O1−176.76 (12)
C10—N2—C11—C12−70.18 (14)C5—C6—C7—N12.74 (12)
C2—C1—C6—C7−178.78 (12)C1—C6—C7—N1−177.93 (12)
C2—C1—C6—C50.48 (19)N1—C9—C10—O3161.21 (10)
C6—C1—C2—C30.0 (2)N1—C9—C10—N2−20.48 (14)
C1—C2—C3—C4−0.5 (2)N2—C11—C12—O4154.71 (12)
C2—C3—C4—C50.4 (2)N2—C11—C12—O5−27.42 (14)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.908 (18)2.172 (19)3.0208 (13)155.3 (17)
O5—H5···O3ii0.93 (2)1.67 (2)2.5777 (13)165.4 (17)
C2—H2A···O5iii0.952.523.3142 (17)141
C9—H9A···O4iv0.992.563.2407 (15)126
C9—H9B···O4v0.992.593.3378 (15)132
C11—H11A···O5i0.992.483.4364 (14)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.908 (18)2.172 (19)3.0208 (13)155.3 (17)
O5—H5⋯O3ii0.93 (2)1.67 (2)2.5777 (13)165.4 (17)
C2—H2A⋯O5iii0.952.523.3142 (17)141
C9—H9A⋯O4iv0.992.563.2407 (15)126
C9—H9B⋯O4v0.992.593.3378 (15)132
C11—H11A⋯O5i0.992.483.4364 (14)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Recent advances in the chemistry of phthalimide analogues and their therapeutic potential.

Authors:  U Sharma; P Kumar; N Kumar; B Singh
Journal:  Mini Rev Med Chem       Date:  2010-07       Impact factor: 3.862

3.  2-(4-Amino-5-thioxo-4,5-dihydro-1H-1,2,4-triazol-3-ylmeth-yl)isoindoline-1,3-dione.

Authors:  Uzma Yunus; Mohammad Kalim Tahir; Moazzam Hussain Bhatti; Naveeda Yousaf; Madeleine Helliwell
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-23

4.  New phthalimide derivatives with potent analgesic activity: II.

Authors:  R Antunes; H Batista; R M Srivastava; G Thomas; C C Araujo
Journal:  Bioorg Med Chem Lett       Date:  1998-11-03       Impact factor: 2.823

  4 in total
  1 in total

1.  Crystal structure of diethyl {2,2,2-tri-chloro-1-[2-(1,3-dioxo-2,3-di-hydro-1H-isoindol-2-yl)-4-methyl-pentanamido]-eth-yl}phospho-nate.

Authors:  V S Brovarets; O V Golovchenko; E B Rusanov; J A Rusanova
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-06-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.