Literature DB >> 21589104

rac-6-Hy-droxy-4-(4-nitro-phen-yl)-5-(2-thienyl-carbon-yl)-6-(trifluoro-meth-yl)-3,4,5,6-tetra-hydro-pyrimidin-2(1H)-one monohydrate.

Jian-Li Zhang1, Hong-Sheng Wang, Yu-Jiao Niu, Feng-Xiang Zhu.   

Abstract

The title compound, C(16)H(12)F(3)N(3)O(5)S·H(2)O, was prepared by reaction of 4-nitro-benzaldehyde, 4,4,4-trifluoro-1-(thio-phen-2-yl)butane-1,3-dione and urea. The asymmetric unit contains two independent mol-ecules, with essentially identical geom-etries and conformations. The dihydro-pyrimidine rings adopt a half-chair conformation. The dihedral angles between the benzene ring and the thio-phene ring are 54.82 (8) and 58.72 (8)° in the two mol-ecules. The mol-ecular conformation of one of the mol-ecules is stabilized by two intra-molecular O-H⋯O hydrogen bonds, generating an S(6) ring. The crystal structure is stabilized by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21589104      PMCID: PMC3009071          DOI: 10.1107/S1600536810041589

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bioactivity of dihydro­pyrimidines, see: Brier et al. (2004 ▶); Cochran et al. (2005 ▶); Moran et al. (2007 ▶); Zorkun et al. (2006 ▶). For the bioactivity of organofluorine compounds, see: Hermann et al. (2003 ▶); Ulrich (2004 ▶).

Experimental

Crystal data

C16H12F3N3O5S·H2O M = 433.36 Orthorhombic, a = 14.1640 (13) Å b = 9.136 (1) Å c = 27.459 (3) Å V = 3553.3 (6) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 113 K 0.24 × 0.20 × 0.18 mm

Data collection

Rigaku Saturn724 CCD diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009 ▶) T min = 0.941, T max = 0.956 34133 measured reflections 7861 independent reflections 7466 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.091 S = 1.05 7861 reflections 563 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 3539 Friedel pairs Flack parameter: −0.01 (5) Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalStructure (Rigaku, 2009 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041589/fj2348sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041589/fj2348Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12F3N3O5S·H2OF(000) = 1776
Mr = 433.36Dx = 1.620 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2c -2nCell parameters from 9674 reflections
a = 14.1640 (13) Åθ = 1.6–27.9°
b = 9.136 (1) ŵ = 0.26 mm1
c = 27.459 (3) ÅT = 113 K
V = 3553.3 (6) Å3Prism, colorless
Z = 80.24 × 0.20 × 0.18 mm
Rigaku Saturn724 CCD diffractometer7861 independent reflections
Radiation source: rotating anode7466 reflections with I > 2σ(I)
multilayerRint = 0.031
Detector resolution: 14.222 pixels mm-1θmax = 27.9°, θmin = 1.5°
ω scansh = −18→18
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009)k = −12→11
Tmin = 0.941, Tmax = 0.956l = −35→36
34133 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0567P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
7861 reflectionsΔρmax = 0.37 e Å3
563 parametersΔρmin = −0.27 e Å3
1 restraintAbsolute structure: Flack (1983), 3539 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.60772 (5)−0.35697 (6)0.08791 (3)0.03689 (15)
F10.37968 (10)−0.23469 (13)0.00751 (6)0.0331 (3)
F20.27429 (8)−0.07998 (14)−0.01598 (5)0.0274 (3)
F30.35284 (9)−0.04033 (14)0.04972 (5)0.0292 (3)
O10.45567 (10)−0.08713 (15)−0.06818 (5)0.0212 (3)
O20.43350 (10)0.36232 (14)−0.06593 (5)0.0211 (3)
O30.59480 (11)−0.23377 (16)−0.01125 (6)0.0282 (3)
O40.89623 (12)0.33821 (17)0.13355 (6)0.0335 (4)
O50.96906 (14)0.1399 (2)0.11251 (7)0.0467 (5)
N10.40188 (13)0.13684 (17)−0.03407 (6)0.0180 (3)
N20.55597 (13)0.2246 (2)−0.04098 (7)0.0203 (4)
N30.90201 (14)0.22519 (19)0.10965 (7)0.0249 (4)
C10.43619 (13)−0.01001 (19)−0.02507 (7)0.0165 (4)
C20.46358 (14)0.2445 (2)−0.04839 (7)0.0183 (4)
C30.60082 (14)0.0912 (2)−0.02294 (7)0.0173 (4)
H30.62490.0323−0.05100.021*
C40.52713 (14)0.00176 (19)0.00539 (7)0.0172 (4)
H4A0.51170.05640.03590.021*
C50.68228 (15)0.1286 (2)0.01111 (7)0.0182 (4)
C60.67296 (15)0.2434 (2)0.04432 (8)0.0216 (4)
H6A0.61690.30050.04450.026*
C70.74425 (16)0.2748 (2)0.07696 (7)0.0214 (4)
H70.73830.35350.09940.026*
C80.82467 (15)0.1886 (2)0.07617 (7)0.0205 (4)
C90.83640 (15)0.0731 (2)0.04422 (8)0.0226 (4)
H90.89220.01540.04470.027*
C100.76357 (14)0.0438 (2)0.01115 (7)0.0202 (4)
H100.7698−0.0346−0.01140.024*
C110.35973 (15)−0.0915 (2)0.00413 (7)0.0203 (4)
C120.56951 (15)−0.1468 (2)0.01993 (8)0.0206 (4)
C130.57782 (15)−0.1808 (2)0.07158 (8)0.0217 (4)
C140.56852 (15)−0.0877 (2)0.11324 (7)0.0241 (4)
H140.55430.01390.11240.029*
C150.58417 (19)−0.1726 (3)0.15664 (9)0.0361 (6)
H150.5803−0.13260.18850.043*
C160.60494 (19)−0.3148 (3)0.14778 (10)0.0407 (7)
H160.6168−0.38420.17280.049*
S20.87505 (5)0.87073 (6)0.23286 (2)0.03609 (15)
F40.62278 (9)0.54205 (14)0.26486 (4)0.0278 (3)
F50.64890 (10)0.73570 (13)0.30749 (6)0.0319 (3)
F60.54339 (9)0.57986 (14)0.33042 (5)0.0261 (3)
O60.72494 (11)0.58706 (15)0.38319 (5)0.0206 (3)
O70.70213 (11)0.13746 (14)0.38037 (5)0.0213 (3)
O80.86907 (11)0.72990 (16)0.32953 (6)0.0253 (3)
O91.16517 (13)0.15713 (17)0.18214 (6)0.0363 (4)
O101.23927 (14)0.3536 (2)0.20196 (8)0.0558 (6)
N40.67149 (13)0.36304 (16)0.34850 (6)0.0174 (3)
N50.82537 (13)0.27411 (19)0.35508 (7)0.0201 (4)
N61.17126 (14)0.2717 (2)0.20498 (7)0.0264 (4)
C170.70562 (14)0.5113 (2)0.34018 (7)0.0181 (4)
C180.73277 (14)0.2537 (2)0.36261 (7)0.0172 (4)
C190.87044 (14)0.4083 (2)0.33745 (7)0.0194 (4)
H190.89510.46580.36570.023*
C200.79665 (14)0.49985 (19)0.30975 (7)0.0173 (4)
H200.78140.44850.27860.021*
C210.62941 (15)0.5919 (2)0.31056 (8)0.0208 (4)
C220.95101 (14)0.37086 (19)0.30321 (7)0.0173 (4)
C230.94011 (15)0.2601 (2)0.26815 (8)0.0222 (4)
H230.88290.20600.26690.027*
C241.01085 (15)0.2290 (2)0.23565 (7)0.0218 (4)
H241.00340.15370.21210.026*
C251.09372 (15)0.3103 (2)0.23800 (7)0.0205 (4)
C261.10671 (16)0.4235 (2)0.27159 (8)0.0236 (4)
H261.16350.47890.27200.028*
C271.03457 (14)0.4527 (2)0.30426 (8)0.0211 (4)
H271.04190.52870.32750.025*
C280.83971 (14)0.6501 (2)0.29737 (7)0.0190 (4)
C290.84472 (15)0.6933 (2)0.24656 (8)0.0210 (4)
C300.82926 (16)0.6111 (2)0.20372 (8)0.0251 (4)
H300.81300.51020.20320.030*
C310.84114 (19)0.6988 (3)0.16187 (9)0.0356 (6)
H310.83400.66240.12970.043*
C320.8636 (2)0.8396 (3)0.17194 (10)0.0391 (6)
H320.87200.91280.14780.047*
O110.98547 (11)0.12871 (16)0.40001 (6)0.0222 (3)
O120.78322 (11)0.87168 (16)0.41523 (6)0.0219 (3)
H12A0.785 (2)0.818 (3)0.3900 (11)0.043 (8)*
H12B0.777 (2)0.950 (4)0.4040 (12)0.058 (10)*
H10.3382 (17)0.146 (2)−0.0483 (9)0.020 (6)*
H20.5907 (17)0.283 (3)−0.0528 (9)0.022 (6)*
H50.859 (2)0.209 (3)0.3656 (10)0.035 (7)*
H40.615 (2)0.362 (3)0.3582 (9)0.028 (7)*
H60.6766 (19)0.603 (3)0.3989 (10)0.029 (7)*
H1A0.399 (3)−0.106 (4)−0.0845 (14)0.073 (11)*
H11A0.9996 (19)0.051 (3)0.4119 (10)0.034 (8)*
H11B0.982 (2)0.188 (3)0.4227 (11)0.042 (8)*
U11U22U33U12U13U23
S10.0438 (4)0.0252 (3)0.0416 (4)0.0070 (2)−0.0030 (3)0.0096 (2)
F10.0316 (8)0.0147 (6)0.0531 (9)−0.0018 (5)0.0029 (7)0.0088 (6)
F20.0176 (6)0.0335 (7)0.0311 (7)−0.0052 (5)−0.0027 (5)0.0088 (5)
F30.0302 (7)0.0358 (7)0.0216 (6)−0.0038 (5)0.0023 (6)0.0011 (5)
O10.0194 (8)0.0232 (7)0.0210 (7)0.0013 (6)−0.0034 (6)−0.0063 (6)
O20.0199 (8)0.0173 (6)0.0261 (7)−0.0003 (5)−0.0042 (6)0.0053 (5)
O30.0308 (9)0.0224 (7)0.0313 (8)0.0083 (6)−0.0068 (7)−0.0071 (6)
O40.0384 (10)0.0298 (8)0.0322 (9)−0.0065 (7)−0.0105 (8)−0.0042 (7)
O50.0321 (11)0.0551 (11)0.0528 (12)0.0129 (8)−0.0214 (9)−0.0176 (10)
N10.0175 (9)0.0135 (8)0.0230 (8)0.0008 (6)−0.0030 (7)0.0024 (6)
N20.0158 (9)0.0194 (8)0.0256 (9)−0.0023 (7)−0.0031 (7)0.0076 (7)
N30.0253 (10)0.0276 (9)0.0219 (9)−0.0060 (7)−0.0058 (8)0.0032 (7)
C10.0171 (10)0.0132 (8)0.0192 (9)−0.0001 (7)−0.0034 (8)−0.0014 (7)
C20.0183 (10)0.0200 (9)0.0167 (9)−0.0010 (8)0.0011 (8)0.0017 (7)
C30.0160 (10)0.0163 (8)0.0196 (9)0.0014 (7)−0.0007 (8)0.0005 (7)
C40.0180 (10)0.0138 (8)0.0199 (9)0.0017 (7)−0.0020 (8)−0.0001 (7)
C50.0181 (10)0.0180 (9)0.0185 (9)−0.0018 (7)−0.0011 (8)0.0031 (7)
C60.0189 (11)0.0213 (9)0.0246 (10)0.0016 (8)−0.0020 (8)−0.0015 (8)
C70.0236 (11)0.0203 (9)0.0204 (10)−0.0017 (8)−0.0001 (8)−0.0035 (8)
C80.0198 (11)0.0237 (9)0.0180 (9)−0.0054 (8)−0.0038 (8)0.0039 (7)
C90.0201 (11)0.0214 (9)0.0265 (10)0.0001 (8)−0.0010 (8)−0.0006 (8)
C100.0199 (11)0.0184 (9)0.0222 (10)0.0010 (8)−0.0027 (8)−0.0009 (8)
C110.0209 (11)0.0185 (9)0.0216 (10)0.0010 (7)−0.0022 (8)0.0017 (7)
C120.0154 (10)0.0169 (9)0.0296 (11)−0.0006 (7)−0.0048 (9)0.0002 (8)
C130.0184 (11)0.0163 (9)0.0303 (10)−0.0008 (8)−0.0060 (9)0.0055 (7)
C140.0208 (11)0.0311 (10)0.0205 (10)0.0064 (8)−0.0012 (8)0.0112 (8)
C150.0361 (15)0.0453 (14)0.0269 (12)0.0058 (11)−0.0007 (11)0.0050 (10)
C160.0357 (15)0.0459 (16)0.0405 (15)0.0049 (12)−0.0027 (12)0.0243 (12)
S20.0525 (4)0.0218 (2)0.0340 (3)−0.0066 (2)0.0044 (3)0.0062 (2)
F40.0294 (7)0.0327 (7)0.0213 (6)0.0030 (5)−0.0034 (5)0.0000 (5)
F50.0323 (7)0.0156 (5)0.0478 (8)0.0023 (5)−0.0039 (7)0.0052 (6)
F60.0173 (6)0.0315 (6)0.0296 (6)0.0051 (5)0.0031 (5)0.0058 (5)
O60.0196 (8)0.0229 (7)0.0193 (7)−0.0004 (6)0.0025 (6)−0.0042 (6)
O70.0226 (8)0.0160 (7)0.0253 (7)0.0012 (5)0.0047 (6)0.0047 (5)
O80.0287 (9)0.0236 (7)0.0236 (7)−0.0073 (6)0.0028 (6)−0.0041 (6)
O90.0433 (11)0.0295 (8)0.0361 (9)0.0045 (7)0.0192 (8)−0.0046 (7)
O100.0339 (11)0.0690 (14)0.0646 (14)−0.0199 (10)0.0273 (10)−0.0271 (11)
N40.0145 (9)0.0147 (7)0.0231 (9)0.0011 (6)0.0033 (7)0.0030 (6)
N50.0184 (9)0.0171 (8)0.0247 (9)0.0038 (7)0.0033 (7)0.0054 (7)
N60.0239 (10)0.0317 (9)0.0238 (9)0.0025 (8)0.0045 (8)0.0008 (8)
C170.0184 (11)0.0150 (8)0.0210 (10)−0.0004 (7)0.0017 (8)−0.0002 (7)
C180.0185 (10)0.0163 (8)0.0167 (9)0.0006 (8)0.0032 (8)0.0000 (7)
C190.0202 (11)0.0184 (9)0.0196 (9)0.0012 (8)0.0037 (8)0.0016 (7)
C200.0181 (10)0.0153 (8)0.0185 (9)0.0002 (7)0.0015 (8)−0.0015 (7)
C210.0232 (11)0.0168 (9)0.0225 (10)0.0002 (7)0.0017 (8)0.0005 (7)
C220.0179 (10)0.0165 (9)0.0174 (9)0.0027 (7)0.0032 (8)0.0014 (7)
C230.0201 (11)0.0199 (9)0.0266 (11)−0.0033 (8)0.0001 (9)−0.0031 (8)
C240.0222 (11)0.0210 (9)0.0222 (10)0.0015 (8)−0.0004 (9)−0.0023 (8)
C250.0198 (11)0.0215 (9)0.0203 (9)0.0048 (8)0.0043 (8)0.0029 (8)
C260.0185 (11)0.0259 (10)0.0264 (11)−0.0031 (8)0.0033 (9)0.0021 (8)
C270.0220 (11)0.0198 (9)0.0215 (9)−0.0002 (8)−0.0009 (9)−0.0017 (8)
C280.0177 (10)0.0167 (9)0.0226 (10)0.0001 (7)0.0031 (8)0.0005 (7)
C290.0180 (11)0.0192 (9)0.0258 (10)−0.0012 (8)0.0022 (8)0.0009 (8)
C300.0264 (12)0.0282 (10)0.0208 (10)−0.0069 (8)0.0033 (9)−0.0006 (8)
C310.0333 (15)0.0496 (15)0.0238 (11)−0.0044 (11)0.0023 (10)0.0034 (10)
C320.0449 (16)0.0382 (13)0.0342 (13)−0.0031 (11)0.0040 (12)0.0150 (11)
O110.0262 (9)0.0159 (7)0.0245 (8)0.0022 (6)0.0001 (6)−0.0019 (6)
O120.0239 (8)0.0178 (7)0.0242 (8)0.0026 (6)0.0004 (6)−0.0026 (6)
S1—C161.689 (3)F4—C211.338 (2)
S1—C131.724 (2)F5—C211.345 (2)
F1—C111.341 (2)F6—C211.339 (2)
F2—C111.334 (2)O6—C171.396 (2)
F3—C111.340 (2)O6—H60.82 (3)
O1—C11.405 (2)O7—C181.247 (2)
O1—H1A0.93 (4)O8—C281.218 (2)
O2—C21.254 (2)O9—N61.224 (2)
O3—C121.222 (3)O10—N61.222 (3)
O4—N31.226 (2)N4—C181.379 (2)
O5—N31.231 (3)N4—C171.456 (2)
N1—C21.373 (2)N4—H40.84 (3)
N1—C11.448 (2)N5—C181.341 (3)
N1—H10.99 (2)N5—C191.465 (2)
N2—C21.337 (3)N5—H50.82 (3)
N2—C31.462 (2)N6—C251.467 (3)
N2—H20.80 (3)C17—C211.539 (3)
N3—C81.469 (3)C17—C201.540 (3)
C1—C41.540 (3)C19—C221.518 (3)
C1—C111.540 (3)C19—C201.539 (3)
C3—C51.524 (3)C19—H191.0000
C3—C41.537 (3)C20—C281.540 (3)
C3—H31.0000C20—H201.0000
C4—C121.537 (3)C22—C271.400 (3)
C4—H4A1.0000C22—C231.405 (3)
C5—C101.388 (3)C23—C241.372 (3)
C5—C61.396 (3)C23—H230.9500
C6—C71.380 (3)C24—C251.391 (3)
C6—H6A0.9500C24—H240.9500
C7—C81.385 (3)C25—C261.398 (3)
C7—H70.9500C26—C271.386 (3)
C8—C91.382 (3)C26—H260.9500
C9—C101.400 (3)C27—H270.9500
C9—H90.9500C28—C291.452 (3)
C10—H100.9500C29—C301.413 (3)
C12—C131.457 (3)C30—C311.411 (3)
C13—C141.432 (3)C30—H300.9500
C14—C151.439 (3)C31—C321.354 (4)
C14—H140.9500C31—H310.9500
C15—C161.355 (4)C32—H320.9500
C15—H150.9500O11—H11A0.81 (3)
C16—H160.9500O11—H11B0.83 (3)
S2—C321.705 (3)O12—H12A0.85 (3)
S2—C291.719 (2)O12—H12B0.79 (3)
C16—S1—C1391.98 (12)C17—O6—H6111.8 (18)
C1—O1—H1A109 (2)C18—N4—C17120.59 (17)
C2—N1—C1119.93 (17)C18—N4—H4120.1 (17)
C2—N1—H1114.3 (13)C17—N4—H4111.9 (16)
C1—N1—H1116.7 (13)C18—N5—C19126.40 (17)
C2—N2—C3126.19 (17)C18—N5—H5115 (2)
C2—N2—H2116.9 (18)C19—N5—H5118 (2)
C3—N2—H2115.4 (18)O10—N6—O9122.99 (19)
O4—N3—O5123.40 (19)O10—N6—C25118.99 (18)
O4—N3—C8118.49 (19)O9—N6—C25118.01 (18)
O5—N3—C8118.10 (18)O6—C17—N4113.17 (16)
O1—C1—N1112.75 (16)O6—C17—C21110.32 (15)
O1—C1—C4109.18 (15)N4—C17—C21107.17 (16)
N1—C1—C4107.98 (14)O6—C17—C20109.18 (16)
O1—C1—C11109.54 (15)N4—C17—C20107.44 (15)
N1—C1—C11107.52 (16)C21—C17—C20109.46 (16)
C4—C1—C11109.84 (16)O7—C18—N5121.27 (18)
O2—C2—N2120.51 (18)O7—C18—N4120.53 (18)
O2—C2—N1120.57 (18)N5—C18—N4118.16 (17)
N2—C2—N1118.82 (18)N5—C19—C22110.10 (16)
N2—C3—C5110.45 (16)N5—C19—C20108.79 (16)
N2—C3—C4108.65 (16)C22—C19—C20109.09 (16)
C5—C3—C4108.86 (16)N5—C19—H19109.6
N2—C3—H3109.6C22—C19—H19109.6
C5—C3—H3109.6C20—C19—H19109.6
C4—C3—H3109.6C19—C20—C28108.92 (16)
C3—C4—C12109.60 (16)C19—C20—C17109.72 (15)
C3—C4—C1109.30 (15)C28—C20—C17113.00 (15)
C12—C4—C1113.97 (15)C19—C20—H20108.4
C3—C4—H4A107.9C28—C20—H20108.4
C12—C4—H4A107.9C17—C20—H20108.4
C1—C4—H4A107.9F4—C21—F6106.85 (17)
C10—C5—C6119.84 (19)F4—C21—F5106.75 (16)
C10—C5—C3120.19 (17)F6—C21—F5107.02 (16)
C6—C5—C3119.87 (18)F4—C21—C17112.44 (16)
C7—C6—C5120.74 (19)F6—C21—C17112.55 (16)
C7—C6—H6A119.6F5—C21—C17110.88 (16)
C5—C6—H6A119.6C27—C22—C23119.43 (18)
C6—C7—C8118.24 (18)C27—C22—C19120.17 (17)
C6—C7—H7120.9C23—C22—C19120.28 (18)
C8—C7—H7120.9C24—C23—C22120.99 (19)
C9—C8—C7122.89 (19)C24—C23—H23119.5
C9—C8—N3118.78 (19)C22—C23—H23119.5
C7—C8—N3118.29 (18)C23—C24—C25118.40 (19)
C8—C9—C10117.99 (19)C23—C24—H24120.8
C8—C9—H9121.0C25—C24—H24120.8
C10—C9—H9121.0C24—C25—C26122.47 (19)
C5—C10—C9120.30 (18)C24—C25—N6118.35 (18)
C5—C10—H10119.9C26—C25—N6119.15 (19)
C9—C10—H10119.9C27—C26—C25118.2 (2)
F2—C11—F3107.04 (16)C27—C26—H26120.9
F2—C11—F1107.27 (16)C25—C26—H26120.9
F3—C11—F1106.93 (16)C26—C27—C22120.49 (19)
F2—C11—C1112.58 (16)C26—C27—H27119.8
F3—C11—C1111.65 (16)C22—C27—H27119.8
F1—C11—C1111.06 (16)O8—C28—C29121.14 (18)
O3—C12—C13121.33 (19)O8—C28—C20120.58 (18)
O3—C12—C4120.45 (19)C29—C28—C20118.28 (17)
C13—C12—C4118.22 (18)C30—C29—C28130.41 (18)
C14—C13—C12130.08 (18)C30—C29—S2110.97 (16)
C14—C13—S1111.70 (15)C28—C29—S2118.61 (15)
C12—C13—S1118.18 (16)C31—C30—C29110.97 (19)
C13—C14—C15109.10 (19)C31—C30—H30124.5
C13—C14—H14125.4C29—C30—H30124.5
C15—C14—H14125.4C32—C31—C30113.7 (2)
C16—C15—C14113.7 (2)C32—C31—H31123.2
C16—C15—H15123.2C30—C31—H31123.2
C14—C15—H15123.2C31—C32—S2112.42 (19)
C15—C16—S1113.50 (19)C31—C32—H32123.8
C15—C16—H16123.3S2—C32—H32123.8
S1—C16—H16123.3H11A—O11—H11B107 (3)
C32—S2—C2991.93 (12)H12A—O12—H12B102 (3)
C2—N1—C1—O1−75.5 (2)C18—N4—C17—O6−75.2 (2)
C2—N1—C1—C445.2 (2)C18—N4—C17—C21162.97 (17)
C2—N1—C1—C11163.65 (17)C18—N4—C17—C2045.4 (2)
C3—N2—C2—O2−177.07 (18)C19—N5—C18—O7−175.88 (19)
C3—N2—C2—N16.4 (3)C19—N5—C18—N46.5 (3)
C1—N1—C2—O2165.12 (18)C17—N4—C18—O7163.48 (18)
C1—N1—C2—N2−18.3 (3)C17—N4—C18—N5−18.9 (3)
C2—N2—C3—C5−142.2 (2)C18—N5—C19—C22−142.0 (2)
C2—N2—C3—C4−22.9 (3)C18—N5—C19—C20−22.5 (3)
N2—C3—C4—C12173.84 (16)N5—C19—C20—C28172.20 (16)
C5—C3—C4—C12−65.8 (2)C22—C19—C20—C28−67.68 (19)
N2—C3—C4—C148.3 (2)N5—C19—C20—C1748.0 (2)
C5—C3—C4—C1168.61 (15)C22—C19—C20—C17168.15 (15)
O1—C1—C4—C363.20 (18)O6—C17—C20—C1963.79 (19)
N1—C1—C4—C3−59.71 (19)N4—C17—C20—C19−59.30 (19)
C11—C1—C4—C3−176.67 (15)C21—C17—C20—C19−175.35 (15)
O1—C1—C4—C12−59.8 (2)O6—C17—C20—C28−58.0 (2)
N1—C1—C4—C12177.29 (17)N4—C17—C20—C28178.94 (16)
C11—C1—C4—C1260.3 (2)C21—C17—C20—C2862.9 (2)
N2—C3—C5—C10−143.50 (19)O6—C17—C21—F4166.64 (15)
C4—C3—C5—C1097.3 (2)N4—C17—C21—F4−69.8 (2)
N2—C3—C5—C640.2 (2)C20—C17—C21—F446.5 (2)
C4—C3—C5—C6−79.0 (2)O6—C17—C21—F6−72.6 (2)
C10—C5—C6—C70.8 (3)N4—C17—C21—F651.0 (2)
C3—C5—C6—C7177.05 (18)C20—C17—C21—F6167.20 (15)
C5—C6—C7—C8−0.6 (3)O6—C17—C21—F547.2 (2)
C6—C7—C8—C90.0 (3)N4—C17—C21—F5170.82 (16)
C6—C7—C8—N3177.81 (18)C20—C17—C21—F5−73.0 (2)
O4—N3—C8—C9170.99 (19)N5—C19—C22—C27−141.55 (19)
O5—N3—C8—C9−9.6 (3)C20—C19—C22—C2799.1 (2)
O4—N3—C8—C7−6.9 (3)N5—C19—C22—C2342.6 (2)
O5—N3—C8—C7172.6 (2)C20—C19—C22—C23−76.8 (2)
C7—C8—C9—C100.4 (3)C27—C22—C23—C241.4 (3)
N3—C8—C9—C10−177.31 (18)C19—C22—C23—C24177.32 (18)
C6—C5—C10—C9−0.2 (3)C22—C23—C24—C25−0.4 (3)
C3—C5—C10—C9−176.53 (18)C23—C24—C25—C26−1.1 (3)
C8—C9—C10—C5−0.3 (3)C23—C24—C25—N6176.76 (18)
O1—C1—C11—F2−72.7 (2)O10—N6—C25—C24170.3 (2)
N1—C1—C11—F250.2 (2)O9—N6—C25—C24−10.7 (3)
C4—C1—C11—F2167.44 (15)O10—N6—C25—C26−11.8 (3)
O1—C1—C11—F3166.91 (15)O9—N6—C25—C26167.2 (2)
N1—C1—C11—F3−70.3 (2)C24—C25—C26—C271.4 (3)
C4—C1—C11—F347.0 (2)N6—C25—C26—C27−176.41 (19)
O1—C1—C11—F147.7 (2)C25—C26—C27—C22−0.3 (3)
N1—C1—C11—F1170.49 (16)C23—C22—C27—C26−1.1 (3)
C4—C1—C11—F1−72.3 (2)C19—C22—C27—C26−176.98 (19)
C3—C4—C12—O3−62.2 (2)C19—C20—C28—O8−58.2 (2)
C1—C4—C12—O360.6 (3)C17—C20—C28—O864.0 (2)
C3—C4—C12—C13118.2 (2)C19—C20—C28—C29121.5 (2)
C1—C4—C12—C13−118.9 (2)C17—C20—C28—C29−116.3 (2)
O3—C12—C13—C14167.7 (2)O8—C28—C29—C30168.8 (2)
C4—C12—C13—C14−12.8 (3)C20—C28—C29—C30−10.9 (3)
O3—C12—C13—S1−9.5 (3)O8—C28—C29—S2−10.4 (3)
C4—C12—C13—S1170.01 (15)C20—C28—C29—S2169.89 (14)
C16—S1—C13—C141.81 (19)C32—S2—C29—C301.98 (19)
C16—S1—C13—C12179.52 (18)C32—S2—C29—C28−178.64 (19)
C12—C13—C14—C15−179.3 (2)C28—C29—C30—C31179.5 (2)
S1—C13—C14—C15−1.9 (2)S2—C29—C30—C31−1.3 (2)
C13—C14—C15—C161.1 (3)C29—C30—C31—C32−0.4 (3)
C14—C15—C16—S10.2 (3)C30—C31—C32—S21.9 (3)
C13—S1—C16—C15−1.2 (2)C29—S2—C32—C31−2.3 (2)
D—H···AD—HH···AD···AD—H···A
O12—H12A···O60.85 (3)2.28 (3)2.867 (2)126 (2)
O12—H12A···O80.85 (3)2.20 (3)2.949 (2)147 (3)
O12—H12B···O7i0.79 (3)2.11 (3)2.852 (2)156 (3)
N1—H1···O12ii0.99 (2)2.00 (2)2.969 (2)168.5 (19)
N2—H2···O12iii0.80 (3)2.15 (3)2.905 (2)159 (2)
N5—H5···O110.82 (3)2.15 (3)2.903 (2)153 (3)
N4—H4···O11iv0.84 (3)2.17 (3)2.991 (2)166 (2)
O6—H6···O2v0.82 (3)1.86 (3)2.684 (2)179 (3)
O1—H1A···O7vi0.93 (4)1.76 (4)2.684 (2)175 (4)
O11—H11A···O2vii0.81 (3)2.06 (3)2.849 (2)166 (3)
O11—H11B···O3viii0.83 (3)2.23 (3)2.968 (2)148 (3)
O11—H11B···O1viii0.83 (3)2.25 (3)2.863 (2)131 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O12—H12A⋯O60.85 (3)2.28 (3)2.867 (2)126 (2)
O12—H12A⋯O80.85 (3)2.20 (3)2.949 (2)147 (3)
O12—H12B⋯O7i0.79 (3)2.11 (3)2.852 (2)156 (3)
N1—H1⋯O12ii0.99 (2)2.00 (2)2.969 (2)168.5 (19)
N2—H2⋯O12iii0.80 (3)2.15 (3)2.905 (2)159 (2)
N5—H5⋯O110.82 (3)2.15 (3)2.903 (2)153 (3)
N4—H4⋯O11iv0.84 (3)2.17 (3)2.991 (2)166 (2)
O6—H6⋯O2v0.82 (3)1.86 (3)2.684 (2)179 (3)
O1—H1A⋯O7vi0.93 (4)1.76 (4)2.684 (2)175 (4)
O11—H11A⋯O2vii0.81 (3)2.06 (3)2.849 (2)166 (3)
O11—H11B⋯O3viii0.83 (3)2.23 (3)2.968 (2)148 (3)
O11—H11B⋯O1viii0.83 (3)2.25 (3)2.863 (2)131 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  4 in total

1.  Synthesis of 4-aryl-3,4-dihydropyrimidin-2(1H)-thione derivatives as potential calcium channel blockers.

Authors:  Inci Selin Zorkun; Selma Saraç; Semra Celebi; Kevser Erol
Journal:  Bioorg Med Chem       Date:  2006-09-12       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Monastrol inhibition of the mitotic kinesin Eg5.

Authors:  Jared C Cochran; Joseph E Gatial; Tarun M Kapoor; Susan P Gilbert
Journal:  J Biol Chem       Date:  2005-01-23       Impact factor: 5.157

4.  Identification of the protein binding region of S-trityl-L-cysteine, a new potent inhibitor of the mitotic kinesin Eg5.

Authors:  Sébastien Brier; David Lemaire; Salvatore Debonis; Eric Forest; Frank Kozielski
Journal:  Biochemistry       Date:  2004-10-19       Impact factor: 3.162

  4 in total
  1 in total

1.  Synthesis and crystal structure of ebastinium hydrogen fumarate.

Authors:  Prabhakar Priyanka; Bidarur K Jayanna; Haruvegowda Kiran Kumar; Thayamma R Divakara; Hemmige S Yathirajan; Sean Parkin
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-08-18
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.