Literature DB >> 21589102

9-(2,6-Dimethyl-phen-oxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Damian Trzybiński1, Karol Krzymiński, Jerzy Błażejowski.   

Abstract

In the crystal structure of the title compound, C(23)H(20)NO(2) (+)·CF(3)SO(3) (-), adjacent cations are linked through a network of C-H⋯π and π-π inter-actions, and neighboring cations and anions via C-H⋯O inter-actions. The acridine and benzene ring systems are oriented at a dihedral angle of 31.4 (1)°. The carboxyl group is twisted at an angle of 66.3 (1)° relative to the acridine skeleton. The mean planes of the adjacent acridine moieties are parallel in the crystal structure.

Entities:  

Year:  2010        PMID: 21589102      PMCID: PMC3009356          DOI: 10.1107/S1600536810041449

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemiluminogenic properties of 9-phen­oxy­carbonyl-10-methyl­acridinium trifluoro­meth­ane­sulfonates, see: Brown et al. (2009 ▶); Natrajan et al. (2010 ▶). For related structures, see: Krzymiński et al. (2009 ▶); Niziołek et al. (2009 ▶). For inter­molecular inter­actions, see: Dorn et al. (2005 ▶); Hunter et al. (2001 ▶); Novoa et al. (2006 ▶); Takahashi et al. (2001 ▶). For the synthesis, see: Sato (1996 ▶); Niziołek et al. (2009 ▶).

Experimental

Crystal data

C23H20NO2CF3SO3 M = 491.48 Triclinic, a = 9.5841 (4) Å b = 11.2491 (6) Å c = 12.1738 (3) Å α = 106.080 (3)° β = 101.890 (3)° γ = 110.755 (4)° V = 1109.66 (8) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 295 K 0.58 × 0.18 × 0.05 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer 9670 measured reflections 3922 independent reflections 3124 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.125 S = 1.09 3922 reflections 321 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041449/ng5042sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041449/ng5042Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20NO2+·CF3SO3Z = 2
Mr = 491.48F(000) = 508
Triclinic, P1Dx = 1.471 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.5841 (4) ÅCell parameters from 66666 reflections
b = 11.2491 (6) Åθ = 3.0–29.1°
c = 12.1738 (3) ŵ = 0.21 mm1
α = 106.080 (3)°T = 295 K
β = 101.890 (3)°Prism, light-yellow
γ = 110.755 (4)°0.58 × 0.18 × 0.05 mm
V = 1109.66 (8) Å3
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer3124 reflections with I > 2σ(I)
Radiation source: Enhanced (Mo) X-ray SourceRint = 0.016
graphiteθmax = 25.1°, θmin = 3.1°
Detector resolution: 10.4002 pixels mm-1h = −11→11
ω scansk = −13→10
9670 measured reflectionsl = −14→14
3922 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0673P)2 + 0.2264P] where P = (Fo2 + 2Fc2)/3
3922 reflections(Δ/σ)max = 0.001
321 parametersΔρmax = 0.33 e Å3
6 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.3818 (3)0.3638 (2)0.13066 (19)0.0649 (6)
H10.46540.35280.10910.078*
C20.2838 (3)0.3952 (3)0.0588 (2)0.0777 (7)
H20.29960.4048−0.01180.093*
C30.1595 (3)0.4130 (3)0.0913 (2)0.0787 (8)
H30.09320.43500.04190.094*
C40.1322 (3)0.3992 (2)0.1928 (2)0.0687 (6)
H40.04890.41300.21250.082*
C50.2865 (2)0.3196 (2)0.56175 (19)0.0545 (5)
H50.19910.32610.57970.065*
C60.3931 (3)0.3026 (2)0.6409 (2)0.0592 (5)
H60.37710.29750.71260.071*
C70.5267 (2)0.2924 (2)0.61744 (18)0.0557 (5)
H70.59870.28200.67370.067*
C80.5505 (2)0.29779 (19)0.51298 (17)0.0479 (4)
H80.63860.28980.49750.057*
C90.46128 (19)0.32004 (18)0.31651 (16)0.0424 (4)
N100.20515 (16)0.34795 (16)0.37176 (15)0.0499 (4)
C110.3594 (2)0.34746 (19)0.23794 (16)0.0474 (4)
C120.2299 (2)0.36386 (19)0.26929 (17)0.0505 (5)
C130.44292 (19)0.31544 (17)0.42602 (15)0.0411 (4)
C140.30806 (19)0.32732 (18)0.45257 (17)0.0448 (4)
C150.5963 (2)0.29831 (19)0.28346 (16)0.0436 (4)
O160.53926 (14)0.18238 (13)0.18486 (11)0.0503 (3)
O170.73309 (15)0.37184 (15)0.33881 (13)0.0625 (4)
C180.6473 (2)0.1321 (2)0.15004 (17)0.0514 (5)
C190.6730 (3)0.0416 (2)0.1981 (2)0.0641 (6)
C200.7664 (3)−0.0180 (3)0.1546 (3)0.0849 (8)
H200.7870−0.08000.18440.102*
C210.8276 (3)0.0133 (3)0.0693 (3)0.0922 (9)
H210.8888−0.02800.04120.111*
C220.8000 (3)0.1047 (3)0.0246 (2)0.0813 (8)
H220.84280.1245−0.03380.098*
C230.7089 (2)0.1689 (2)0.06460 (19)0.0631 (6)
C240.6045 (4)0.0075 (3)0.2916 (3)0.0923 (9)
H24A0.4922−0.02130.26270.138*
H24B0.65270.08740.36580.138*
H24C0.6248−0.06540.30610.138*
C250.6814 (3)0.2718 (3)0.0184 (2)0.0835 (8)
H25A0.56970.2402−0.01950.125*
H25B0.73380.2826−0.03990.125*
H25C0.72320.35860.08500.125*
C260.0613 (3)0.3550 (3)0.3959 (3)0.0779 (8)
H26A−0.027 (3)0.305 (3)0.3197 (17)0.113 (10)*
H26B0.034 (3)0.307 (3)0.448 (2)0.106 (11)*
H26C0.069 (5)0.4454 (19)0.431 (3)0.184 (19)*
S270.95913 (6)0.27457 (6)0.72251 (5)0.05989 (19)
O281.1219 (2)0.3034 (3)0.77069 (16)0.1008 (7)
O290.9225 (2)0.3134 (2)0.62202 (16)0.0875 (5)
O300.8851 (2)0.3042 (2)0.81008 (15)0.0879 (6)
C310.8618 (4)0.0892 (3)0.6536 (3)0.0856 (8)
F320.8764 (3)0.0335 (2)0.7353 (3)0.1501 (9)
F330.9169 (3)0.0417 (2)0.5713 (2)0.1554 (10)
F340.7072 (2)0.0441 (2)0.5986 (2)0.1331 (8)
U11U22U33U12U13U23
C10.0770 (14)0.0765 (15)0.0556 (12)0.0464 (13)0.0212 (10)0.0297 (11)
C20.1007 (19)0.0832 (18)0.0582 (13)0.0549 (16)0.0142 (13)0.0298 (12)
C30.0827 (17)0.0773 (17)0.0680 (15)0.0458 (14)−0.0039 (13)0.0235 (13)
C40.0540 (12)0.0665 (14)0.0776 (15)0.0362 (11)0.0030 (11)0.0176 (12)
C50.0524 (11)0.0474 (11)0.0663 (12)0.0206 (9)0.0297 (10)0.0199 (9)
C60.0715 (13)0.0539 (12)0.0596 (11)0.0266 (10)0.0331 (10)0.0252 (10)
C70.0611 (12)0.0542 (12)0.0549 (11)0.0254 (10)0.0182 (9)0.0261 (9)
C80.0437 (9)0.0490 (11)0.0550 (10)0.0226 (8)0.0171 (8)0.0220 (9)
C90.0369 (8)0.0385 (9)0.0483 (9)0.0161 (7)0.0119 (7)0.0140 (8)
N100.0350 (7)0.0455 (9)0.0609 (9)0.0192 (7)0.0114 (7)0.0099 (7)
C110.0448 (9)0.0433 (10)0.0497 (10)0.0214 (8)0.0091 (8)0.0139 (8)
C120.0421 (9)0.0422 (10)0.0541 (11)0.0186 (8)0.0046 (8)0.0084 (8)
C130.0355 (8)0.0346 (9)0.0484 (9)0.0134 (7)0.0128 (7)0.0130 (7)
C140.0373 (9)0.0344 (9)0.0546 (10)0.0125 (7)0.0149 (8)0.0105 (8)
C150.0425 (10)0.0471 (10)0.0475 (9)0.0223 (8)0.0170 (8)0.0222 (8)
O160.0422 (6)0.0538 (8)0.0512 (7)0.0208 (6)0.0188 (5)0.0130 (6)
O170.0392 (7)0.0589 (9)0.0731 (9)0.0175 (6)0.0162 (6)0.0095 (7)
C180.0414 (9)0.0491 (11)0.0562 (11)0.0166 (8)0.0223 (8)0.0097 (9)
C190.0627 (12)0.0548 (13)0.0801 (14)0.0277 (11)0.0356 (11)0.0225 (11)
C200.0797 (16)0.0653 (16)0.122 (2)0.0416 (14)0.0483 (16)0.0305 (15)
C210.0762 (16)0.0717 (17)0.129 (2)0.0345 (14)0.0622 (17)0.0164 (17)
C220.0696 (15)0.0780 (18)0.0849 (16)0.0207 (13)0.0505 (13)0.0128 (14)
C230.0526 (11)0.0643 (14)0.0577 (11)0.0143 (10)0.0260 (9)0.0121 (10)
C240.125 (2)0.0864 (19)0.118 (2)0.0658 (18)0.0734 (19)0.0631 (17)
C250.0869 (17)0.106 (2)0.0748 (15)0.0398 (16)0.0463 (13)0.0480 (15)
C260.0458 (12)0.101 (2)0.0848 (17)0.0402 (13)0.0235 (12)0.0217 (16)
S270.0655 (3)0.0737 (4)0.0501 (3)0.0355 (3)0.0266 (2)0.0255 (3)
O280.0647 (10)0.1509 (19)0.0711 (11)0.0372 (11)0.0187 (8)0.0367 (12)
O290.1033 (13)0.1112 (14)0.0781 (11)0.0551 (12)0.0399 (10)0.0610 (11)
O300.1185 (15)0.1062 (14)0.0730 (10)0.0705 (12)0.0590 (10)0.0348 (10)
C310.101 (2)0.091 (2)0.0888 (18)0.0516 (17)0.0548 (16)0.0386 (16)
F320.212 (3)0.1266 (17)0.191 (2)0.1025 (18)0.106 (2)0.1062 (17)
F330.187 (2)0.1174 (16)0.164 (2)0.0741 (16)0.1115 (18)0.0081 (14)
F340.0897 (13)0.1208 (16)0.1312 (15)0.0049 (11)0.0360 (11)0.0222 (12)
C1—C21.357 (3)O16—C181.426 (2)
C1—C111.417 (3)C18—C191.374 (3)
C1—H10.9300C18—C231.385 (3)
C2—C31.392 (4)C19—C201.398 (3)
C2—H20.9300C19—C241.498 (3)
C3—C41.352 (4)C20—C211.361 (4)
C3—H30.9300C20—H200.9300
C4—C121.419 (3)C21—C221.366 (4)
C4—H40.9300C21—H210.9300
C5—C61.357 (3)C22—C231.396 (3)
C5—C141.408 (3)C22—H220.9300
C5—H50.9300C23—C251.497 (4)
C6—C71.404 (3)C24—H24A0.9600
C6—H60.9300C24—H24B0.9600
C7—C81.351 (3)C24—H24C0.9600
C7—H70.9300C25—H25A0.9600
C8—C131.427 (3)C25—H25B0.9600
C8—H80.9300C25—H25C0.9600
C9—C131.393 (3)C26—H26A0.971 (16)
C9—C111.398 (3)C26—H26B0.966 (16)
C9—C151.510 (2)C26—H26C0.956 (17)
N10—C121.364 (3)S27—O301.4262 (17)
N10—C141.372 (2)S27—O291.4274 (17)
N10—C261.492 (3)S27—O281.4290 (19)
C11—C121.428 (3)S27—C311.803 (3)
C13—C141.436 (2)C31—F331.301 (3)
C15—O171.190 (2)C31—F321.323 (4)
C15—O161.341 (2)C31—F341.331 (3)
C2—C1—C11121.3 (2)C19—C18—O16116.51 (17)
C2—C1—H1119.3C23—C18—O16118.52 (19)
C11—C1—H1119.3C18—C19—C20116.4 (2)
C1—C2—C3119.5 (2)C18—C19—C24122.2 (2)
C1—C2—H2120.3C20—C19—C24121.5 (2)
C3—C2—H2120.3C21—C20—C19121.0 (3)
C4—C3—C2122.0 (2)C21—C20—H20119.5
C4—C3—H3119.0C19—C20—H20119.5
C2—C3—H3119.0C20—C21—C22120.7 (2)
C3—C4—C12120.4 (2)C20—C21—H21119.6
C3—C4—H4119.8C22—C21—H21119.6
C12—C4—H4119.8C21—C22—C23121.3 (2)
C6—C5—C14120.13 (18)C21—C22—H22119.3
C6—C5—H5119.9C23—C22—H22119.3
C14—C5—H5119.9C18—C23—C22115.8 (2)
C5—C6—C7121.8 (2)C18—C23—C25122.5 (2)
C5—C6—H6119.1C22—C23—C25121.7 (2)
C7—C6—H6119.1C19—C24—H24A109.5
C8—C7—C6119.85 (19)C19—C24—H24B109.5
C8—C7—H7120.1H24A—C24—H24B109.5
C6—C7—H7120.1C19—C24—H24C109.5
C7—C8—C13121.10 (18)H24A—C24—H24C109.5
C7—C8—H8119.4H24B—C24—H24C109.5
C13—C8—H8119.4C23—C25—H25A109.5
C13—C9—C11121.32 (16)C23—C25—H25B109.5
C13—C9—C15119.28 (15)H25A—C25—H25B109.5
C11—C9—C15119.39 (17)C23—C25—H25C109.5
C12—N10—C14122.34 (15)H25A—C25—H25C109.5
C12—N10—C26118.00 (18)H25B—C25—H25C109.5
C14—N10—C26119.65 (19)N10—C26—H26A108.1 (18)
C9—C11—C1122.93 (18)N10—C26—H26B109.5 (19)
C9—C11—C12118.46 (18)H26A—C26—H26B106.0 (18)
C1—C11—C12118.58 (18)N10—C26—H26C116 (3)
N10—C12—C4122.02 (19)H26A—C26—H26C109 (2)
N10—C12—C11119.78 (17)H26B—C26—H26C108 (2)
C4—C12—C11118.2 (2)O30—S27—O29115.49 (12)
C9—C13—C8123.28 (16)O30—S27—O28115.69 (11)
C9—C13—C14118.62 (16)O29—S27—O28114.61 (12)
C8—C13—C14118.10 (17)O30—S27—C31102.71 (12)
N10—C14—C5121.83 (17)O29—S27—C31102.86 (13)
N10—C14—C13119.14 (17)O28—S27—C31102.72 (15)
C5—C14—C13119.02 (17)F33—C31—F32108.6 (3)
O17—C15—O16125.17 (17)F33—C31—F34106.8 (3)
O17—C15—C9124.77 (17)F32—C31—F34106.9 (3)
O16—C15—C9110.03 (14)F33—C31—S27111.8 (2)
C15—O16—C18118.64 (14)F32—C31—S27111.7 (2)
C19—C18—C23124.78 (19)F34—C31—S27110.7 (2)
C11—C1—C2—C30.6 (4)C8—C13—C14—N10178.32 (15)
C1—C2—C3—C4−0.4 (4)C9—C13—C14—C5178.53 (16)
C2—C3—C4—C12−0.9 (4)C8—C13—C14—C5−0.7 (2)
C14—C5—C6—C70.1 (3)C13—C9—C15—O17−63.4 (3)
C5—C6—C7—C8−0.9 (3)C11—C9—C15—O17115.1 (2)
C6—C7—C8—C130.8 (3)C13—C9—C15—O16114.90 (17)
C13—C9—C11—C1174.81 (18)C11—C9—C15—O16−66.6 (2)
C15—C9—C11—C1−3.7 (3)O17—C15—O16—C187.9 (3)
C13—C9—C11—C12−3.2 (3)C9—C15—O16—C18−170.39 (16)
C15—C9—C11—C12178.28 (16)C15—O16—C18—C1990.5 (2)
C2—C1—C11—C9−177.6 (2)C15—O16—C18—C23−94.2 (2)
C2—C1—C11—C120.4 (3)C23—C18—C19—C20−1.1 (3)
C14—N10—C12—C4−173.36 (18)O16—C18—C19—C20173.85 (19)
C26—N10—C12—C46.0 (3)C23—C18—C19—C24179.2 (2)
C14—N10—C12—C115.4 (3)O16—C18—C19—C24−5.9 (3)
C26—N10—C12—C11−175.25 (19)C18—C19—C20—C210.0 (4)
C3—C4—C12—N10−179.4 (2)C24—C19—C20—C21179.8 (3)
C3—C4—C12—C111.8 (3)C19—C20—C21—C220.4 (4)
C9—C11—C12—N10−2.2 (3)C20—C21—C22—C230.1 (4)
C1—C11—C12—N10179.66 (17)C19—C18—C23—C221.5 (3)
C9—C11—C12—C4176.56 (17)O16—C18—C23—C22−173.29 (17)
C1—C11—C12—C4−1.5 (3)C19—C18—C23—C25−177.9 (2)
C11—C9—C13—C8−175.30 (17)O16—C18—C23—C257.3 (3)
C15—C9—C13—C83.2 (3)C21—C22—C23—C18−1.0 (4)
C11—C9—C13—C145.5 (3)C21—C22—C23—C25178.4 (2)
C15—C9—C13—C14−175.99 (15)O30—S27—C31—F33−178.7 (2)
C7—C8—C13—C9−179.25 (18)O29—S27—C31—F3361.1 (3)
C7—C8—C13—C140.0 (3)O28—S27—C31—F33−58.3 (3)
C12—N10—C14—C5175.98 (17)O30—S27—C31—F32−56.7 (2)
C26—N10—C14—C5−3.4 (3)O29—S27—C31—F32−177.0 (2)
C12—N10—C14—C13−3.0 (3)O28—S27—C31—F3263.7 (2)
C26—N10—C14—C13177.62 (19)O30—S27—C31—F3462.4 (2)
C6—C5—C14—N10−178.31 (18)O29—S27—C31—F34−57.9 (2)
C6—C5—C14—C130.7 (3)O28—S27—C31—F34−177.18 (19)
C9—C13—C14—N10−2.4 (2)
Cg4 is the centroid of the C18–C23 ring.
D—H···AD—HH···AD···AD—H···A
C2—H2···O28i0.932.513.224 (3)134
C25—H25B···O30ii0.962.573.525 (3)176
C26—H26A···Cg4iii0.96 (3)2.86 (2)3.774 (3)158 (3)
C26—H26B···O29iii0.96 (3)2.56 (3)3.369 (4)142 (2)
XIJI···JX···JXI···J
C31F32Cg1iv3.655 (3)4.490 (4)121.5 (2)
C31F32Cg3iv3.886 (3)3.974 (4)84.1 (2)
C31F33Cg3iv3.746 (3)3.974 (4)90.4 (2)
C31F34Cg3iv3.481 (2)3.974 (4)101.9 (2)
IJCgI···CgJDihedral angleCgI_PerpCgI_Offset
13v3.502 (2)2.71 (10)3.473 (1)0.445 (1)
23v3.977 (2)6.38 (11)3.286 (1)2.240 (1)
31v3.502 (2)2.71 (10)3.470 (1)0.480 (1)
32v3.977 (2)6.38 (11)3.503 (1)1.883 (1)
Table 1

Hydrogen-bond geometry (Å, °)

Cg4 is the centroid of the C18–C23 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O28i0.932.513.224 (3)134
C25—H25B⋯O30ii0.962.573.525 (3)176
C26—H26ACg4iii0.96 (3)2.86 (2)3.774 (3)158 (3)
C26—H26B⋯O29iii0.96 (3)2.56 (3)3.369 (4)142 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

π–π inter­actions (Å,°)

Cg1, Cg2 and Cg3 are the centroids of the C9/N10/C11–C14, C1–C4/C11/C12 and C5–C8/C13/C14 rings, respectively. CgI⋯CgJ is the distance between ring centroids. The dihedral angle is that between the planes of the rings I and J. CgI_Perp is the perpendicular distance of CgI from ring J. CgI_Offset is the distance between CgI and perpendicular projection of CgJ on ring I.

IJCgICgJDihedral angleCgI_PerpCgI_Offset
13v3.502 (2)2.71 (10)3.473 (1)0.445 (1)
23v3.977 (2)6.38 (11)3.286 (1)2.240 (1)
31v3.502 (2)2.71 (10)3.470 (1)0.480 (1)
32v3.977 (2)6.38 (11)3.503 (1)1.883 (1)

Symmetry code: (v) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Anand Natrajan; David Sharpe; Jim Costello; Qingping Jiang
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4.  Development and application of a novel acridinium ester for use as a chemiluminescent emitter in nucleic acid hybridisation assays using chemiluminescence quenching.

Authors:  Richard C Brown; Zhaoqiang Li; Andrew J Rutter; Xiaojing Mu; Owen H Weeks; Keith Smith; Ian Weeks
Journal:  Org Biomol Chem       Date:  2008-11-24       Impact factor: 3.876

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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