Literature DB >> 21589072

17β-Hy-droxy-17α-(hy-droxy-meth-yl)estr-4-en-3-one.

Sammer Yousuf, Salman Zafar, Muhammed Iqbal Choudhary, Seik Weng Ng.   

Abstract

The title compound, C(19)H(28)O(3), the fungal-transformed metabolite of the steroid methyl-oestrenol contains four fused rings A, B, C and D. Ring A adopts a half-chair and the trans-fused rings B and C adopt chair confirmations; the five-membered D ring is folded like an envelope. In the crystal, adjacent mol-ecules are linked by O-H⋯O(carbon-yl) and O-H⋯O(hy-droxy) hydrogen bonds into a layer structure.

Entities:  

Year:  2010        PMID: 21589072      PMCID: PMC3009298          DOI: 10.1107/S160053681004033X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Hübner & Ponsold (1983 ▶); Ponsold et al. (1978a ▶,b ▶); Szilagyi et al. (1984 ▶). For the crystal structures of three modified17b-hy­droxy-3-oxo-17a-(halogen/pseudo­halogenometh­yl)-estra-4-ene progestagens, see: Beck et al. (1986a ▶,b ▶,c ▶).

Experimental

Crystal data

C19H28O3 M = 304.41 Orthorhombic, a = 9.9696 (6) Å b = 12.5858 (8) Å c = 13.3968 (8) Å V = 1680.97 (18) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.35 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX CCD diffractometer 11685 measured reflections 2203 independent reflections 1799 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.119 S = 1.11 2203 reflections 207 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681004033X/hb5675sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004033X/hb5675Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H28O3F(000) = 664
Mr = 304.41Dx = 1.203 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2043 reflections
a = 9.9696 (6) Åθ = 2.5–21.3°
b = 12.5858 (8) ŵ = 0.08 mm1
c = 13.3968 (8) ÅT = 295 K
V = 1680.97 (18) Å3Prism, colorless
Z = 40.35 × 0.20 × 0.10 mm
Bruker SMART APEX CCD diffractometer1799 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.047
graphiteθmax = 27.5°, θmin = 2.2°
ω scansh = −12→12
11685 measured reflectionsk = −15→16
2203 independent reflectionsl = −17→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + (0.0591P)2 + 0.0486P] where P = (Fo2 + 2Fc2)/3
2203 reflections(Δ/σ)max = 0.001
207 parametersΔρmax = 0.19 e Å3
2 restraintsΔρmin = −0.28 e Å3
xyzUiso*/Ueq
O10.5961 (3)1.11961 (17)1.13914 (18)0.0682 (7)
O20.39264 (19)0.32100 (16)1.04677 (15)0.0492 (5)
O30.6378 (2)0.26561 (14)0.97416 (16)0.0462 (5)
C10.6147 (3)0.8388 (2)1.17666 (19)0.0464 (7)
H1A0.51760.83851.17220.056*
H1B0.64080.79061.22970.056*
C20.6631 (3)0.9507 (2)1.2017 (2)0.0506 (7)
H2A0.62350.97341.26430.061*
H2B0.75980.95031.20970.061*
C30.6256 (3)1.0271 (2)1.1211 (2)0.0451 (6)
C40.6340 (3)0.9862 (2)1.0191 (2)0.0420 (6)
H40.61851.03280.96660.050*
C50.6628 (2)0.88515 (19)0.99789 (19)0.0356 (6)
C60.6928 (3)0.8510 (2)0.89256 (19)0.0438 (7)
H6A0.78930.84800.88390.053*
H6B0.65840.90440.84710.053*
C70.6336 (3)0.74360 (19)0.86388 (19)0.0445 (7)
H7A0.66890.72200.79950.053*
H7B0.53700.74990.85790.053*
C80.6673 (3)0.65901 (18)0.94171 (18)0.0333 (5)
H80.76510.65320.94680.040*
C90.6117 (3)0.69403 (18)1.04371 (16)0.0310 (5)
H90.51530.70641.03500.037*
C100.6743 (3)0.80063 (18)1.07782 (17)0.0329 (5)
H100.77010.78791.08900.040*
C110.6269 (3)0.60786 (18)1.12419 (19)0.0393 (6)
H11A0.72090.60151.14180.047*
H11B0.57850.62981.18350.047*
C120.5748 (3)0.49914 (18)1.09091 (16)0.0342 (6)
H12A0.59400.44701.14230.041*
H12B0.47820.50261.08260.041*
C130.6389 (2)0.46399 (18)0.99316 (17)0.0306 (5)
C140.6106 (3)0.55026 (19)0.91475 (17)0.0336 (5)
H140.51290.55840.91160.040*
C150.6536 (4)0.4988 (2)0.8161 (2)0.0542 (8)
H15A0.74880.50870.80440.065*
H15B0.60400.52850.76040.065*
C160.6199 (3)0.3807 (2)0.8303 (2)0.0525 (7)
H16A0.69730.33730.81400.063*
H16B0.54660.36050.78670.063*
C170.5796 (2)0.36350 (19)0.94063 (18)0.0343 (5)
C180.7903 (3)0.4452 (2)1.0088 (2)0.0494 (7)
H18B0.82910.50601.04120.074*
H18C0.83290.43450.94540.074*
H18D0.80330.38351.04980.074*
C190.4282 (3)0.3522 (2)0.9490 (2)0.0419 (6)
H19A0.38570.41950.93310.050*
H19B0.39680.29960.90160.050*
H20.3200 (19)0.288 (2)1.041 (2)0.065 (10)*
H30.595 (4)0.242 (3)1.023 (2)0.098 (16)*
U11U22U33U12U13U23
O10.0825 (17)0.0374 (11)0.0847 (16)0.0077 (11)0.0139 (13)−0.0098 (11)
O20.0399 (11)0.0470 (11)0.0606 (13)−0.0140 (9)0.0059 (9)0.0023 (9)
O30.0407 (11)0.0276 (9)0.0702 (15)0.0056 (8)0.0070 (10)0.0029 (9)
C10.0666 (19)0.0341 (14)0.0384 (14)−0.0083 (13)0.0058 (13)−0.0056 (11)
C20.064 (2)0.0374 (14)0.0500 (17)−0.0081 (14)0.0078 (15)−0.0113 (12)
C30.0394 (14)0.0333 (14)0.0627 (17)−0.0052 (12)0.0067 (13)−0.0055 (12)
C40.0438 (15)0.0303 (13)0.0520 (15)−0.0035 (11)−0.0025 (13)0.0058 (11)
C50.0342 (13)0.0307 (12)0.0418 (14)−0.0074 (10)0.0000 (11)0.0038 (10)
C60.0580 (17)0.0341 (14)0.0395 (14)−0.0086 (13)0.0047 (12)0.0086 (11)
C70.0672 (19)0.0362 (14)0.0300 (13)−0.0089 (14)−0.0019 (13)0.0038 (10)
C80.0377 (12)0.0302 (12)0.0319 (12)−0.0034 (10)0.0021 (10)0.0003 (9)
C90.0335 (12)0.0270 (11)0.0326 (12)−0.0035 (10)0.0008 (10)0.0013 (9)
C100.0375 (13)0.0287 (12)0.0325 (13)−0.0033 (10)−0.0022 (10)−0.0002 (9)
C110.0582 (17)0.0310 (12)0.0288 (12)−0.0027 (12)−0.0022 (12)0.0035 (9)
C120.0461 (15)0.0276 (12)0.0291 (12)−0.0033 (11)0.0013 (10)0.0052 (9)
C130.0276 (12)0.0288 (11)0.0354 (13)−0.0004 (10)0.0002 (10)−0.0006 (9)
C140.0392 (13)0.0312 (12)0.0305 (12)−0.0036 (11)0.0015 (10)−0.0007 (9)
C150.085 (2)0.0407 (15)0.0373 (15)−0.0107 (16)0.0157 (15)−0.0060 (12)
C160.071 (2)0.0397 (15)0.0470 (16)−0.0072 (15)0.0116 (15)−0.0112 (13)
C170.0348 (12)0.0263 (12)0.0417 (13)0.0010 (10)0.0006 (11)−0.0003 (10)
C180.0350 (15)0.0390 (15)0.074 (2)0.0006 (12)−0.0044 (14)−0.0035 (14)
C190.0380 (13)0.0345 (14)0.0532 (15)−0.0042 (11)−0.0071 (12)0.0012 (12)
O1—C31.225 (3)C9—C101.549 (3)
O2—C191.413 (3)C9—H90.9800
O2—H20.84 (3)C10—H100.9800
O3—C171.434 (3)C11—C121.530 (3)
O3—H30.84 (3)C11—H11A0.9700
C1—C21.526 (4)C11—H11B0.9700
C1—C101.529 (3)C12—C131.523 (3)
C1—H1A0.9700C12—H12A0.9700
C1—H1B0.9700C12—H12B0.9700
C2—C31.493 (4)C13—C141.537 (3)
C2—H2A0.9700C13—C181.543 (3)
C2—H2B0.9700C13—C171.563 (3)
C3—C41.463 (4)C14—C151.533 (3)
C4—C51.334 (4)C14—H140.9800
C4—H40.9300C15—C161.536 (4)
C5—C61.505 (4)C15—H15A0.9700
C5—C101.514 (3)C15—H15B0.9700
C6—C71.524 (3)C16—C171.546 (4)
C6—H6A0.9700C16—H16A0.9700
C6—H6B0.9700C16—H16B0.9700
C7—C81.527 (3)C17—C191.520 (3)
C7—H7A0.9700C18—H18B0.9600
C7—H7B0.9700C18—H18C0.9600
C8—C141.524 (3)C18—H18D0.9600
C8—C91.539 (3)C19—H19A0.9700
C8—H80.9800C19—H19B0.9700
C9—C111.537 (3)
C19—O2—H2106 (2)C12—C11—H11A108.9
C17—O3—H3110 (3)C9—C11—H11A108.9
C2—C1—C10111.0 (2)C12—C11—H11B108.9
C2—C1—H1A109.4C9—C11—H11B108.9
C10—C1—H1A109.4H11A—C11—H11B107.8
C2—C1—H1B109.4C13—C12—C11111.6 (2)
C10—C1—H1B109.4C13—C12—H12A109.3
H1A—C1—H1B108.0C11—C12—H12A109.3
C3—C2—C1110.9 (2)C13—C12—H12B109.3
C3—C2—H2A109.5C11—C12—H12B109.3
C1—C2—H2A109.5H12A—C12—H12B108.0
C3—C2—H2B109.5C12—C13—C14107.80 (19)
C1—C2—H2B109.5C12—C13—C18109.8 (2)
H2A—C2—H2B108.1C14—C13—C18112.4 (2)
O1—C3—C4122.2 (3)C12—C13—C17117.6 (2)
O1—C3—C2122.0 (3)C14—C13—C17101.23 (18)
C4—C3—C2115.7 (2)C18—C13—C17107.9 (2)
C5—C4—C3123.2 (3)C8—C14—C15118.7 (2)
C5—C4—H4118.4C8—C14—C13113.9 (2)
C3—C4—H4118.4C15—C14—C13103.9 (2)
C4—C5—C6121.0 (2)C8—C14—H14106.5
C4—C5—C10122.3 (2)C15—C14—H14106.5
C6—C5—C10116.6 (2)C13—C14—H14106.5
C5—C6—C7114.4 (2)C14—C15—C16103.9 (2)
C5—C6—H6A108.7C14—C15—H15A111.0
C7—C6—H6A108.7C16—C15—H15A111.0
C5—C6—H6B108.7C14—C15—H15B111.0
C7—C6—H6B108.7C16—C15—H15B111.0
H6A—C6—H6B107.6H15A—C15—H15B109.0
C6—C7—C8111.2 (2)C15—C16—C17108.1 (2)
C6—C7—H7A109.4C15—C16—H16A110.1
C8—C7—H7A109.4C17—C16—H16A110.1
C6—C7—H7B109.4C15—C16—H16B110.1
C8—C7—H7B109.4C17—C16—H16B110.1
H7A—C7—H7B108.0H16A—C16—H16B108.4
C14—C8—C7112.5 (2)O3—C17—C19107.4 (2)
C14—C8—C9109.51 (19)O3—C17—C16108.3 (2)
C7—C8—C9109.1 (2)C19—C17—C16110.0 (2)
C14—C8—H8108.5O3—C17—C13113.66 (19)
C7—C8—H8108.5C19—C17—C13114.7 (2)
C9—C8—H8108.5C16—C17—C13102.65 (19)
C11—C9—C8112.66 (19)C13—C18—H18B109.5
C11—C9—C10111.39 (19)C13—C18—H18C109.5
C8—C9—C10111.39 (19)H18B—C18—H18C109.5
C11—C9—H9107.0C13—C18—H18D109.5
C8—C9—H9107.0H18B—C18—H18D109.5
C10—C9—H9107.0H18C—C18—H18D109.5
C5—C10—C1111.2 (2)O2—C19—C17110.1 (2)
C5—C10—C9111.69 (19)O2—C19—H19A109.6
C1—C10—C9111.8 (2)C17—C19—H19A109.6
C5—C10—H10107.3O2—C19—H19B109.6
C1—C10—H10107.3C17—C19—H19B109.6
C9—C10—H10107.3H19A—C19—H19B108.2
C12—C11—C9113.1 (2)
C10—C1—C2—C358.7 (3)C11—C12—C13—C1865.7 (3)
C1—C2—C3—O1145.9 (3)C11—C12—C13—C17−170.4 (2)
C1—C2—C3—C4−37.6 (4)C7—C8—C14—C1559.1 (3)
O1—C3—C4—C5−178.4 (3)C9—C8—C14—C15−179.4 (2)
C2—C3—C4—C55.1 (4)C7—C8—C14—C13−178.2 (2)
C3—C4—C5—C6−169.7 (3)C9—C8—C14—C13−56.7 (3)
C3—C4—C5—C107.0 (4)C12—C13—C14—C860.2 (3)
C4—C5—C6—C7−140.6 (3)C18—C13—C14—C8−60.9 (3)
C10—C5—C6—C742.5 (3)C17—C13—C14—C8−175.7 (2)
C5—C6—C7—C8−50.0 (3)C12—C13—C14—C15−169.2 (2)
C6—C7—C8—C14−179.5 (2)C18—C13—C14—C1569.7 (3)
C6—C7—C8—C958.8 (3)C17—C13—C14—C15−45.2 (2)
C14—C8—C9—C1150.0 (3)C8—C14—C15—C16161.0 (2)
C7—C8—C9—C11173.5 (2)C13—C14—C15—C1633.4 (3)
C14—C8—C9—C10175.97 (19)C14—C15—C16—C17−8.6 (3)
C7—C8—C9—C10−60.5 (3)C15—C16—C17—O3−139.3 (3)
C4—C5—C10—C114.6 (4)C15—C16—C17—C19103.6 (3)
C6—C5—C10—C1−168.6 (2)C15—C16—C17—C13−18.8 (3)
C4—C5—C10—C9140.3 (2)C12—C13—C17—O3−87.4 (3)
C6—C5—C10—C9−42.9 (3)C14—C13—C17—O3155.4 (2)
C2—C1—C10—C5−46.5 (3)C18—C13—C17—O337.3 (3)
C2—C1—C10—C9−172.2 (2)C12—C13—C17—C1936.6 (3)
C11—C9—C10—C5178.6 (2)C14—C13—C17—C19−80.5 (2)
C8—C9—C10—C551.9 (3)C18—C13—C17—C19161.3 (2)
C11—C9—C10—C1−56.0 (3)C12—C13—C17—C16155.8 (2)
C8—C9—C10—C1177.2 (2)C14—C13—C17—C1638.7 (2)
C8—C9—C11—C12−50.1 (3)C18—C13—C17—C16−79.5 (3)
C10—C9—C11—C12−176.1 (2)O3—C17—C19—O253.7 (3)
C9—C11—C12—C1354.1 (3)C16—C17—C19—O2171.4 (2)
C11—C12—C13—C14−56.9 (3)C13—C17—C19—O2−73.6 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.84 (3)1.95 (3)2.779 (3)171 (3)
O3—H3···O1ii0.84 (3)2.18 (3)2.904 (3)144 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.84 (3)1.95 (3)2.779 (3)171 (3)
O3—H3⋯O1ii0.84 (3)2.18 (3)2.904 (3)144 (4)

Symmetry codes: (i) ; (ii) .

  3 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [Progestagens of the 17 alpha-CH2X-substituted 19-nortestosterone derivative type. 57. Steroids].

Authors:  K Ponsold; M Hübner; W Schade; M Oettel; R Freund
Journal:  Pharmazie       Date:  1978-12       Impact factor: 1.267

3.  The synthetic approach to STS 557 - structure activity relationships in 17 alpha-CH2X-substituted 19-nortestosterone derivatives.

Authors:  M Hübner; K Ponsold
Journal:  Exp Clin Endocrinol       Date:  1983-02
  3 in total
  1 in total

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  1 in total

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