Literature DB >> 21589071

Ethyl-enediammonium bis-(3,4-dihy-droxy-benzoate) monohydrate.

Li-Cai Zhu1.   

Abstract

In the title compound, C(2)H(10)N(2) (2+)·2C(7)H(5)O(4) (-)·H(2)O, the cation lies on a centre of symmetry. The crystal structure is stabilized by various inter-molecular O-H⋯O and N-H⋯O n class="Chemical">hydrogen bonds, and by weak π-π stacking inter-actions with centroid-centroid distances between symmetry-related benzene rings ranging from 3.5249 (13) to 3.7566 (14) Å.

Entities:  

Year:  2010        PMID: 21589071      PMCID: PMC3009286          DOI: 10.1107/S1600536810042182

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For protocatechuic acid (n class="Chemical">3,4-dihydroxybenzoic acid) and its pharmacological activity, see: An et al. (2006 ▶); Guan et al. (2006 ▶); Lin et al. (2009 ▶); Tseng et al. (1998 ▶); Yip et al. (2006 ▶). For related structures, see: Mazurek et al. (2007 ▶); Xu et al. (2008 ▶).

Experimental

Crystal data

C2H10N2 2+·2C7H5O4 −·n class="Chemical">H2O M = 386.36 Triclinic, a = 6.8489 (8) Å b = 10.7999 (12) Å c = 12.0137 (13) Å α = 75.866 (1)° β = 81.387 (2)° γ = 83.599 (1)° V = 849.40 (16) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 296 K 0.30 × 0.28 × 0.25 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.969 4432 measured reflections 3011 independent reflections 2215 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.112 S = 1.02 3011 reflections 256 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810042182/su2221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810042182/su2221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H10N22+·2C7H5O4·H2OZ = 2
Mr = 386.36F(000) = 408
Triclinic, P1Dx = 1.511 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.8489 (8) ÅCell parameters from 1194 reflections
b = 10.7999 (12) Åθ = 2.9–24.2°
c = 12.0137 (13) ŵ = 0.13 mm1
α = 75.866 (1)°T = 296 K
β = 81.387 (2)°Block, colourless
γ = 83.599 (1)°0.30 × 0.28 × 0.25 mm
V = 849.40 (16) Å3
Bruker APEXII area-detector diffractometer3011 independent reflections
Radiation source: fine-focus sealed tube2215 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scanθmax = 25.2°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.963, Tmax = 0.969k = −11→12
4432 measured reflectionsl = −7→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0467P)2 + 0.4204P] where P = (Fo2 + 2Fc2)/3
3011 reflections(Δ/σ)max < 0.001
256 parametersΔρmax = 0.38 e Å3
3 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2895 (3)0.8335 (2)0.5353 (2)0.0292 (6)
H10.30310.74890.57690.035*
C20.2487 (3)0.9308 (2)0.5934 (2)0.0301 (6)
H20.23220.91100.67380.036*
C30.2320 (3)1.0577 (2)0.5330 (2)0.0262 (5)
C40.2557 (3)1.0857 (2)0.4127 (2)0.0261 (5)
C50.2916 (3)0.9881 (2)0.3553 (2)0.0268 (5)
H50.30371.00760.27480.032*
C60.3103 (3)0.8606 (2)0.4157 (2)0.0258 (5)
C70.3510 (3)0.7571 (2)0.3514 (2)0.0280 (5)
C80.7469 (3)0.3983 (2)0.1577 (2)0.0295 (6)
H80.65710.33860.16100.035*
C90.6777 (3)0.5199 (2)0.1690 (2)0.0297 (6)
C100.8130 (3)0.6106 (2)0.1619 (2)0.0269 (5)
C111.0130 (3)0.5753 (2)0.1497 (2)0.0291 (6)
H111.10300.63440.14810.035*
C121.0809 (3)0.4523 (2)0.1397 (2)0.0286 (5)
H121.21630.42920.13180.034*
C130.9487 (3)0.3636 (2)0.1413 (2)0.0258 (5)
C141.0255 (3)0.2336 (2)0.12291 (19)0.0247 (5)
C150.5818 (4)0.0203 (2)0.0254 (2)0.0299 (6)
H15A0.5688−0.01560.10820.036*
H15B0.7091−0.0117−0.00850.036*
C160.0738 (4)0.4632 (3)0.5389 (2)0.0377 (6)
H16A0.10910.51730.58530.045*
H16B0.01450.38960.59100.045*
N10.2550 (3)0.41936 (18)0.46971 (18)0.0344 (5)
H1B0.22490.36270.43350.052*
H1C0.34520.38300.51640.052*
H1D0.30360.48620.41780.052*
N20.5721 (3)0.16219 (18)0.00223 (18)0.0323 (5)
H2B0.58030.1949−0.07370.048*
H2C0.67230.18570.02980.048*
H2D0.45790.19100.03670.048*
O10.1944 (3)1.15782 (15)0.58542 (14)0.0342 (4)
H1A0.15751.13110.65450.051*
O20.2417 (3)1.21302 (14)0.35551 (14)0.0358 (4)
H2A0.23851.21870.28650.054*
O30.3090 (2)0.77974 (16)0.24853 (15)0.0343 (4)
O40.4239 (3)0.64879 (15)0.40190 (15)0.0359 (4)
O50.4788 (3)0.55228 (19)0.1832 (2)0.0518 (6)
H5A0.45670.61280.21450.078*
O60.7346 (2)0.73121 (15)0.16717 (17)0.0385 (5)
H60.82450.77750.16140.058*
O71.2060 (2)0.19869 (15)0.13369 (14)0.0319 (4)
O80.9088 (2)0.16349 (15)0.09982 (15)0.0344 (4)
O1W−0.0308 (3)0.90641 (16)0.18631 (16)0.0340 (4)
H1W0.084 (4)0.885 (3)0.208 (2)0.051*
H2W−0.040 (4)0.990 (2)0.159 (2)0.051*
U11U22U33U12U13U23
C10.0341 (14)0.0220 (12)0.0300 (14)−0.0018 (10)−0.0076 (11)−0.0010 (10)
C20.0336 (14)0.0305 (14)0.0256 (13)−0.0035 (10)−0.0042 (11)−0.0043 (11)
C30.0246 (12)0.0263 (13)0.0301 (14)−0.0003 (10)−0.0049 (10)−0.0109 (11)
C40.0278 (13)0.0202 (12)0.0304 (14)−0.0019 (9)−0.0088 (10)−0.0031 (10)
C50.0301 (13)0.0284 (13)0.0229 (13)−0.0034 (10)−0.0069 (10)−0.0055 (10)
C60.0233 (12)0.0222 (12)0.0319 (14)−0.0018 (9)−0.0053 (10)−0.0050 (10)
C70.0216 (12)0.0260 (13)0.0369 (15)−0.0029 (10)−0.0032 (11)−0.0079 (11)
C80.0287 (13)0.0263 (13)0.0367 (15)−0.0064 (10)−0.0054 (11)−0.0107 (11)
C90.0228 (12)0.0336 (14)0.0361 (15)−0.0005 (10)−0.0051 (11)−0.0146 (11)
C100.0319 (13)0.0220 (12)0.0286 (13)−0.0009 (10)−0.0073 (10)−0.0080 (10)
C110.0310 (13)0.0260 (13)0.0319 (14)−0.0080 (10)−0.0073 (11)−0.0055 (11)
C120.0259 (13)0.0261 (13)0.0334 (14)0.0002 (10)−0.0084 (11)−0.0041 (11)
C130.0271 (12)0.0258 (12)0.0250 (13)−0.0001 (10)−0.0062 (10)−0.0057 (10)
C140.0304 (13)0.0235 (12)0.0191 (12)−0.0016 (10)−0.0052 (10)−0.0016 (10)
C150.0289 (13)0.0294 (13)0.0317 (14)0.0011 (10)−0.0066 (10)−0.0071 (11)
C160.0424 (15)0.0335 (14)0.0356 (15)0.0022 (12)−0.0085 (12)−0.0051 (12)
N10.0377 (12)0.0235 (11)0.0413 (13)−0.0021 (9)−0.0100 (10)−0.0031 (9)
N20.0302 (11)0.0325 (12)0.0365 (12)−0.0019 (9)−0.0078 (9)−0.0105 (10)
O10.0466 (11)0.0267 (9)0.0298 (10)−0.0037 (8)−0.0008 (8)−0.0098 (7)
O20.0575 (12)0.0204 (9)0.0296 (10)−0.0020 (8)−0.0139 (9)−0.0018 (7)
O30.0369 (10)0.0352 (10)0.0339 (10)0.0056 (8)−0.0091 (8)−0.0151 (8)
O40.0416 (10)0.0203 (9)0.0457 (11)0.0010 (7)−0.0107 (9)−0.0057 (8)
O50.0277 (10)0.0471 (13)0.0925 (17)−0.0009 (8)−0.0053 (10)−0.0408 (11)
O60.0314 (10)0.0264 (9)0.0618 (13)−0.0010 (7)−0.0062 (9)−0.0183 (9)
O70.0299 (9)0.0305 (9)0.0351 (10)0.0051 (7)−0.0080 (8)−0.0082 (8)
O80.0386 (10)0.0249 (9)0.0445 (11)−0.0009 (7)−0.0168 (8)−0.0112 (8)
O1W0.0348 (10)0.0251 (9)0.0438 (11)−0.0016 (8)−0.0115 (8)−0.0074 (8)
C1—C21.379 (3)C12—H120.9300
C1—C61.383 (3)C13—C141.500 (3)
C1—H10.9300C14—O81.262 (3)
C2—C31.386 (3)C14—O71.268 (3)
C2—H20.9300C15—N21.485 (3)
C3—O11.362 (3)C15—C15i1.506 (5)
C3—C41.391 (3)C15—H15A0.9700
C4—C51.376 (3)C15—H15B0.9700
C4—O21.379 (3)C16—N11.486 (3)
C5—C61.393 (3)C16—C16ii1.507 (5)
C5—H50.9300C16—H16A0.9700
C6—C71.487 (3)C16—H16B0.9700
C7—O41.265 (3)N1—H1B0.8900
C7—O31.270 (3)N1—H1C0.8900
C8—C91.377 (3)N1—H1D0.8900
C8—C131.389 (3)N2—H2B0.8900
C8—H80.9300N2—H2C0.8900
C9—O51.364 (3)N2—H2D0.8900
C9—C101.401 (3)O1—H1A0.8200
C10—O61.365 (3)O2—H2A0.8200
C10—C111.376 (3)O5—H5A0.8200
C11—C121.385 (3)O6—H60.8200
C11—H110.9300O1W—H1W0.85 (2)
C12—C131.384 (3)O1W—H2W0.88 (2)
C2—C1—C6120.6 (2)C12—C13—C8119.0 (2)
C2—C1—H1119.7C12—C13—C14119.6 (2)
C6—C1—H1119.7C8—C13—C14121.4 (2)
C1—C2—C3120.7 (2)O8—C14—O7123.1 (2)
C1—C2—H2119.7O8—C14—C13119.3 (2)
C3—C2—H2119.7O7—C14—C13117.6 (2)
O1—C3—C2123.4 (2)N2—C15—C15i109.9 (2)
O1—C3—C4117.6 (2)N2—C15—H15A109.7
C2—C3—C4119.0 (2)C15i—C15—H15A109.7
C5—C4—O2122.5 (2)N2—C15—H15B109.7
C5—C4—C3120.1 (2)C15i—C15—H15B109.7
O2—C4—C3117.4 (2)H15A—C15—H15B108.2
C4—C5—C6121.0 (2)N1—C16—C16ii110.7 (3)
C4—C5—H5119.5N1—C16—H16A109.5
C6—C5—H5119.5C16ii—C16—H16A109.5
C1—C6—C5118.6 (2)N1—C16—H16B109.5
C1—C6—C7121.5 (2)C16ii—C16—H16B109.5
C5—C6—C7119.9 (2)H16A—C16—H16B108.1
O4—C7—O3122.3 (2)C16—N1—H1B109.5
O4—C7—C6118.7 (2)C16—N1—H1C109.5
O3—C7—C6119.1 (2)H1B—N1—H1C109.5
C9—C8—C13121.0 (2)C16—N1—H1D109.5
C9—C8—H8119.5H1B—N1—H1D109.5
C13—C8—H8119.5H1C—N1—H1D109.5
O5—C9—C8119.9 (2)C15—N2—H2B109.5
O5—C9—C10120.6 (2)C15—N2—H2C109.5
C8—C9—C10119.5 (2)H2B—N2—H2C109.5
O6—C10—C11123.9 (2)C15—N2—H2D109.5
O6—C10—C9116.5 (2)H2B—N2—H2D109.5
C11—C10—C9119.6 (2)H2C—N2—H2D109.5
C10—C11—C12120.3 (2)C3—O1—H1A109.5
C10—C11—H11119.8C4—O2—H2A109.5
C12—C11—H11119.8C9—O5—H5A109.5
C13—C12—C11120.5 (2)C10—O6—H6109.5
C13—C12—H12119.8H1W—O1W—H2W108 (2)
C11—C12—H12119.8
D—H···AD—HH···AD···AD—H···A
N1—H1B···O2iii0.892.042.904 (3)163
N1—H1C···O4iv0.891.942.803 (3)163
N1—H1D···O40.891.982.741 (3)143
N2—H2B···O3v0.892.092.931 (3)158
N2—H2B···O6v0.892.543.079 (3)120
N2—H2C···O80.891.902.742 (2)157
N2—H2D···O7vi0.891.942.799 (3)163
O1—H1A···O1Wvii0.821.942.753 (3)169
O2—H2A···O7viii0.821.952.755 (2)168
O5—H5A···O30.822.072.834 (2)156
O5—H5A···O40.822.353.014 (3)139
O6—H6···O1Wix0.821.902.686 (2)160
O1W—H1W···O30.85 (2)1.86 (2)2.676 (2)159 (3)
O1W—H2W···O8viii0.88 (2)1.85 (2)2.725 (2)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O2i0.892.042.904 (3)163
N1—H1C⋯O4ii0.891.942.803 (3)163
N1—H1D⋯O40.891.982.741 (3)143
N2—H2B⋯O3iii0.892.092.931 (3)158
N2—H2B⋯O6iii0.892.543.079 (3)120
N2—H2C⋯O80.891.902.742 (2)157
N2—H2D⋯O7iv0.891.942.799 (3)163
O1—H1A⋯O1Wv0.821.942.753 (3)169
O2—H2A⋯O7vi0.821.952.755 (2)168
O5—H5A⋯O30.822.072.834 (2)156
O5—H5A⋯O40.822.353.014 (3)139
O6—H6⋯O1Wvii0.821.902.686 (2)160
O1W—H1W⋯O30.85 (2)1.86 (2)2.676 (2)159 (3)
O1W—H2W⋯O8vi0.88 (2)1.85 (2)2.725 (2)173 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Inhibitory effect of Hibiscus protocatechuic acid on tumor promotion in mouse skin.

Authors:  T H Tseng; J D Hsu; M H Lo; C Y Chu; F P Chou; C L Huang; C J Wang
Journal:  Cancer Lett       Date:  1998-04-24       Impact factor: 8.679

3.  Protocatechuic acid induces cell death in HepG2 hepatocellular carcinoma cells through a c-Jun N-terminal kinase-dependent mechanism.

Authors:  E C H Yip; A S L Chan; H Pang; Y K Tam; Y H Wong
Journal:  Cell Biol Toxicol       Date:  2006-07       Impact factor: 6.691

4.  Protective effect of protocatechuic acid from Alpinia oxyphylla on hydrogen peroxide-induced oxidative PC12 cell death.

Authors:  Yong-Ming Bao; Li-Jia An
Journal:  Eur J Pharmacol       Date:  2006-04-05       Impact factor: 4.432

5.  Protocatechuic acid from Alpinia oxyphylla against MPP+-induced neurotoxicity in PC12 cells.

Authors:  L J An; S Guan; G F Shi; Y M Bao; Y L Duan; B Jiang
Journal:  Food Chem Toxicol       Date:  2005-10-11       Impact factor: 6.023

6.  Anticoagulatory, antiinflammatory, and antioxidative effects of protocatechuic acid in diabetic mice.

Authors:  Chia-Yu Lin; Chin-Shiu Huang; Chun-Yin Huang; Mei-Chin Yin
Journal:  J Agric Food Chem       Date:  2009-08-12       Impact factor: 5.279

7.  Ethyl-enediammonium bis-(5-methyl-3-oxo-2-phenyl-2,3-dihydro-pyrazol-1-ide): a hydrogen-bond-supported supra-molecular ionic assembly.

Authors:  Ruibo Xu; Xingyou Xu; Daqi Wang; Xujie Yang; Xin Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23
  7 in total

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