Literature DB >> 21589064

N,N'-Bis[(E)-(5-chloro-2-thienyl)methyl-idene]ethane-1,2-diamine.

R Prasath, P Bhavana, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The full mol-ecule of the title compound, C(12)H(10)Cl(2)N(2)S(2), is generated by the application of a centre of inversion. The thio-phene and imine residues are co-planar [the N-C-C-S torsion angle is -2.5 (4)°] and the conformation about the imine bond [1.268 (4) Å] is E. Supra-molecular arrays are formed in the bc plane via C-Cl⋯π inter-actions and these stack along the a axis.

Entities:  

Year:  2010        PMID: 21589064      PMCID: PMC3009004          DOI: 10.1107/S160053681004167X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2-substituted thio­phenes, see: Campaigne (1984 ▶); Kleemann et al. (2006 ▶). For related structures, see: Wang et al. (2007 ▶); Wardell et al. (2010 ▶); Prasath et al. (2010 ▶).

Experimental

Crystal data

C12H10Cl2N2S2 M = 317.24 Monoclinic, a = 14.682 (2) Å b = 4.7016 (7) Å c = 10.6607 (15) Å β = 109.439 (2)° V = 693.92 (17) Å3 Z = 2 Mo Kα radiation μ = 0.75 mm−1 T = 100 K 0.25 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.835, T max = 0.963 5721 measured reflections 1576 independent reflections 1270 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.117 S = 1.01 1576 reflections 82 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681004167X/hg2729sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004167X/hg2729Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10Cl2N2S2F(000) = 324
Mr = 317.24Dx = 1.518 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2363 reflections
a = 14.682 (2) Åθ = 3.0–28.0°
b = 4.7016 (7) ŵ = 0.75 mm1
c = 10.6607 (15) ÅT = 100 K
β = 109.439 (2)°Prism, colourless
V = 693.92 (17) Å30.25 × 0.15 × 0.05 mm
Z = 2
Bruker SMART APEX diffractometer1576 independent reflections
Radiation source: fine-focus sealed tube1270 reflections with I > 2σ(I)
graphiteRint = 0.058
ω scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −18→18
Tmin = 0.835, Tmax = 0.963k = −6→6
5721 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0662P)2 + 0.3727P] where P = (Fo2 + 2Fc2)/3
1576 reflections(Δ/σ)max = 0.001
82 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.94014 (5)1.46904 (14)0.80609 (6)0.0258 (2)
S10.76180 (5)1.12742 (14)0.69149 (6)0.0220 (2)
N10.58522 (16)0.7601 (5)0.6104 (2)0.0286 (5)
C10.4988 (2)0.5840 (6)0.5603 (3)0.0333 (7)
H1A0.44060.70620.53550.040*
H1B0.49550.45140.63080.040*
C20.63515 (19)0.7367 (6)0.7325 (3)0.0267 (6)
H20.61510.60770.78680.032*
C30.72211 (19)0.9026 (5)0.7907 (3)0.0238 (6)
C40.7822 (2)0.9074 (6)0.9193 (3)0.0282 (6)
H40.77160.79700.98790.034*
C50.8620 (2)1.0934 (6)0.9411 (3)0.0271 (6)
H50.91091.12201.02470.033*
C60.85924 (19)1.2254 (6)0.8263 (2)0.0220 (5)
U11U22U33U12U13U23
Cl10.0284 (4)0.0242 (4)0.0285 (3)−0.0067 (2)0.0141 (3)−0.0066 (2)
S10.0249 (4)0.0199 (4)0.0230 (3)−0.0031 (2)0.0104 (3)−0.0007 (2)
N10.0241 (12)0.0212 (12)0.0432 (14)−0.0047 (9)0.0149 (10)−0.0032 (10)
C10.0288 (15)0.0285 (15)0.0463 (18)−0.0089 (12)0.0173 (13)−0.0043 (13)
C20.0302 (14)0.0184 (13)0.0402 (16)−0.0028 (11)0.0232 (12)−0.0029 (11)
C30.0287 (14)0.0169 (13)0.0323 (14)−0.0025 (10)0.0187 (12)−0.0013 (10)
C40.0416 (17)0.0220 (14)0.0274 (13)−0.0028 (12)0.0202 (12)0.0001 (10)
C50.0353 (15)0.0261 (15)0.0219 (12)−0.0025 (11)0.0122 (11)−0.0033 (10)
C60.0259 (13)0.0188 (13)0.0241 (12)−0.0002 (10)0.0122 (10)−0.0050 (9)
Cl1—C61.714 (3)C2—C31.448 (4)
S1—C61.719 (3)C2—H20.9500
S1—C31.728 (3)C3—C41.362 (4)
N1—C21.268 (4)C4—C51.419 (4)
N1—C11.459 (3)C4—H40.9500
C1—C1i1.519 (6)C5—C61.361 (4)
C1—H1A0.9900C5—H50.9500
C1—H1B0.9900
C6—S1—C390.50 (13)C4—C3—S1111.7 (2)
C2—N1—C1117.5 (2)C2—C3—S1119.7 (2)
N1—C1—C1i110.1 (3)C3—C4—C5113.4 (2)
N1—C1—H1A109.6C3—C4—H4123.3
C1i—C1—H1A109.6C5—C4—H4123.3
N1—C1—H1B109.6C6—C5—C4111.0 (3)
C1i—C1—H1B109.6C6—C5—H5124.5
H1A—C1—H1B108.2C4—C5—H5124.5
N1—C2—C3121.3 (2)C5—C6—Cl1127.1 (2)
N1—C2—H2119.4C5—C6—S1113.4 (2)
C3—C2—H2119.4Cl1—C6—S1119.53 (15)
C4—C3—C2128.6 (2)
C2—N1—C1—C1i−126.6 (3)S1—C3—C4—C50.0 (3)
C1—N1—C2—C3179.9 (2)C3—C4—C5—C60.2 (4)
N1—C2—C3—C4178.4 (3)C4—C5—C6—Cl1179.4 (2)
N1—C2—C3—S1−2.5 (4)C4—C5—C6—S1−0.3 (3)
C6—S1—C3—C4−0.1 (2)C3—S1—C6—C50.3 (2)
C6—S1—C3—C2−179.4 (2)C3—S1—C6—Cl1−179.49 (17)
C2—C3—C4—C5179.1 (3)
Cg1 is the centroid of the S3,C3–C6 ring.
D—H···AD—HH···AD···AD—H···A
C6—Cl1···Cg1ii1.714 (3)3.5182 (14)3.994 (3)93.01 (10)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S3,C3–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C6—Cl1⋯Cg1i1.71 (1)3.52 (1)3.994 (3)93 (1)

Symmetry code: (i) .

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