Literature DB >> 21589059

(E)-2-[4-(Piperidin-1-yl)benzyl-idene]-2,3-dihydro-1H-inden-1-one.

Mohamed Ashraf Ali, Rusli Ismail, Tan Soo Choon, Mohd Mustaqim Rosli, Hoong-Kun Fun.   

Abstract

In the title compound, C(21)H(21)NO, the indene ring system is essentially planar with a maximum deviation of 0.066 (1) Å and makes dihedral angles of 7.93 (6) and 2.43 (6)°, respectively, with the benzene plane and the mean plane of the piperidine ring. These latter two planes make a dihedral angle of 7.61 (7)°. In the crystal, mol-ecules are linked by C-H⋯O inter-actions, forming infinite chains along the b axis.

Entities:  

Year:  2010        PMID: 21589059      PMCID: PMC3009073          DOI: 10.1107/S1600536810041723

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of chalcones, see: Di Carlo et al. (1999 ▶). For background to prostate cancer, see: Heidenreich et al. (2008 ▶); Syed et al. (2008 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H21NO M = 303.39 Orthorhombic, a = 31.587 (5) Å b = 6.3168 (10) Å c = 7.8396 (12) Å V = 1564.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.48 × 0.44 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.993 9828 measured reflections 2764 independent reflections 2563 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.05 2764 reflections 208 parameters 1 restraint H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041723/is2615sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041723/is2615Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21NOF(000) = 648
Mr = 303.39Dx = 1.288 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 3558 reflections
a = 31.587 (5) Åθ = 2.9–31.5°
b = 6.3168 (10) ŵ = 0.08 mm1
c = 7.8396 (12) ÅT = 100 K
V = 1564.2 (4) Å3Plate, yellow
Z = 40.48 × 0.44 × 0.09 mm
Bruker SMART APEXII CCD area-detector diffractometer2764 independent reflections
Radiation source: fine-focus sealed tube2563 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 31.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −40→46
Tmin = 0.963, Tmax = 0.993k = −9→9
9828 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0661P)2 + 0.0999P] where P = (Fo2 + 2Fc2)/3
2764 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 0.33 e Å3
1 restraintΔρmin = −0.19 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.17945 (3)1.37433 (17)0.61883 (16)0.0241 (2)
N10.04981 (4)0.63258 (19)0.61569 (17)0.0179 (2)
C1−0.18171 (4)1.1957 (2)0.55722 (18)0.0184 (3)
C2−0.22001 (4)1.0902 (2)0.48828 (18)0.0179 (3)
C3−0.26187 (5)1.1607 (3)0.4895 (2)0.0218 (3)
H3A−0.26891.29320.53260.026*
C4−0.29267 (5)1.0262 (3)0.4242 (2)0.0241 (3)
H4A−0.32091.06800.42550.029*
C5−0.28173 (5)0.8288 (3)0.3566 (2)0.0231 (3)
H5A−0.30280.74250.31120.028*
C6−0.23996 (4)0.7590 (3)0.3560 (2)0.0217 (3)
H6A−0.23290.62740.31120.026*
C7−0.20910 (4)0.8912 (2)0.42409 (19)0.0184 (3)
C8−0.16237 (5)0.8473 (2)0.4457 (2)0.0200 (3)
H8A−0.15780.72020.51260.024*
H8B−0.14860.83120.33600.024*
C9−0.14622 (4)1.0408 (2)0.53840 (18)0.0176 (3)
C10−0.10770 (4)1.0829 (2)0.60425 (19)0.0186 (3)
H10A−0.10551.21370.65790.022*
C11−0.06892 (4)0.9572 (2)0.60519 (18)0.0175 (3)
C12−0.06350 (5)0.7587 (2)0.52658 (19)0.0196 (3)
H12A−0.08650.69640.47210.023*
C13−0.02498 (5)0.6529 (2)0.52761 (19)0.0191 (3)
H13A−0.02270.52340.47190.023*
C140.01083 (4)0.7381 (2)0.61163 (17)0.0169 (2)
C150.00507 (5)0.9344 (2)0.6943 (2)0.0228 (3)
H15A0.02760.99480.75340.027*
C16−0.03344 (4)1.0388 (3)0.6890 (2)0.0224 (3)
H16A−0.03581.16900.74350.027*
C170.05603 (5)0.4579 (2)0.4944 (2)0.0214 (3)
H17A0.05750.51490.37970.026*
H17B0.03180.36350.50000.026*
C180.09625 (5)0.3320 (2)0.5307 (2)0.0219 (3)
H18A0.09270.25430.63640.026*
H18B0.10060.22990.43990.026*
C190.13536 (5)0.4725 (2)0.5447 (2)0.0226 (3)
H19A0.15980.38800.57590.027*
H19B0.14110.53970.43580.027*
C200.12720 (5)0.6394 (2)0.6797 (2)0.0198 (3)
H20A0.15140.73380.68640.024*
H20B0.12390.57140.78990.024*
C210.08766 (5)0.7671 (2)0.6395 (2)0.0203 (3)
H21A0.08240.86590.73180.024*
H21B0.09250.84870.53650.024*
U11U22U33U12U13U23
O10.0280 (5)0.0152 (5)0.0289 (5)0.0000 (4)0.0002 (5)−0.0022 (4)
N10.0192 (5)0.0134 (5)0.0211 (5)−0.0015 (4)−0.0024 (4)−0.0024 (5)
C10.0204 (6)0.0165 (6)0.0182 (6)−0.0006 (5)0.0019 (5)0.0018 (5)
C20.0190 (6)0.0168 (6)0.0179 (5)−0.0003 (5)0.0008 (5)0.0010 (5)
C30.0215 (7)0.0227 (7)0.0213 (6)0.0037 (5)0.0003 (5)0.0011 (6)
C40.0196 (6)0.0317 (8)0.0210 (6)0.0000 (6)−0.0004 (5)0.0035 (7)
C50.0218 (7)0.0283 (8)0.0190 (6)−0.0054 (6)−0.0012 (5)0.0015 (6)
C60.0234 (7)0.0204 (7)0.0212 (6)−0.0042 (5)0.0000 (5)−0.0010 (6)
C70.0188 (6)0.0189 (6)0.0174 (6)−0.0017 (5)0.0009 (5)0.0004 (5)
C80.0195 (6)0.0171 (6)0.0232 (6)0.0008 (5)0.0014 (5)−0.0032 (5)
C90.0199 (6)0.0148 (6)0.0182 (6)−0.0001 (5)0.0024 (5)0.0001 (5)
C100.0215 (6)0.0165 (6)0.0178 (6)−0.0010 (5)0.0018 (5)−0.0015 (6)
C110.0193 (6)0.0169 (6)0.0163 (5)−0.0014 (5)0.0010 (5)−0.0001 (5)
C120.0200 (6)0.0178 (6)0.0209 (6)−0.0036 (5)−0.0023 (5)−0.0025 (5)
C130.0226 (6)0.0139 (6)0.0209 (6)−0.0019 (5)−0.0024 (5)−0.0024 (5)
C140.0197 (6)0.0150 (6)0.0160 (6)−0.0012 (5)−0.0009 (5)0.0004 (5)
C150.0203 (6)0.0199 (6)0.0283 (7)−0.0004 (6)−0.0039 (6)−0.0079 (6)
C160.0210 (6)0.0213 (7)0.0249 (6)0.0003 (6)−0.0001 (6)−0.0084 (6)
C170.0271 (7)0.0149 (6)0.0222 (6)0.0024 (5)−0.0059 (5)−0.0035 (5)
C180.0279 (7)0.0149 (6)0.0230 (6)0.0037 (5)−0.0028 (6)−0.0016 (6)
C190.0252 (7)0.0197 (7)0.0229 (6)0.0033 (6)0.0022 (5)−0.0006 (6)
C200.0199 (6)0.0173 (6)0.0222 (6)−0.0005 (5)−0.0003 (5)−0.0008 (5)
C210.0197 (6)0.0147 (6)0.0265 (7)−0.0023 (5)−0.0025 (5)−0.0017 (5)
O1—C11.2297 (18)C11—C121.407 (2)
N1—C141.4004 (17)C12—C131.388 (2)
N1—C171.4697 (19)C12—H12A0.9300
N1—C211.4785 (17)C13—C141.4151 (18)
C1—C21.483 (2)C13—H13A0.9300
C1—C91.4951 (19)C14—C151.411 (2)
C2—C31.395 (2)C15—C161.384 (2)
C2—C71.397 (2)C15—H15A0.9300
C3—C41.389 (2)C16—H16A0.9300
C3—H3A0.9300C17—C181.525 (2)
C4—C51.399 (2)C17—H17A0.9700
C4—H4A0.9300C17—H17B0.9700
C5—C61.391 (2)C18—C191.525 (2)
C5—H5A0.9300C18—H18A0.9700
C6—C71.390 (2)C18—H18B0.9700
C6—H6A0.9300C19—C201.516 (2)
C7—C81.512 (2)C19—H19A0.9700
C8—C91.511 (2)C19—H19B0.9700
C8—H8A0.9700C20—C211.520 (2)
C8—H8B0.9700C20—H20A0.9700
C9—C101.3482 (19)C20—H20B0.9700
C10—C111.4601 (19)C21—H21A0.9700
C10—H10A0.9300C21—H21B0.9700
C11—C161.3977 (19)
C14—N1—C17117.39 (12)C12—C13—C14121.35 (13)
C14—N1—C21116.13 (11)C12—C13—H13A119.3
C17—N1—C21113.90 (12)C14—C13—H13A119.3
O1—C1—C2127.06 (13)N1—C14—C15121.40 (12)
O1—C1—C9126.56 (13)N1—C14—C13122.18 (12)
C2—C1—C9106.38 (12)C15—C14—C13116.41 (12)
C3—C2—C7121.54 (14)C16—C15—C14121.22 (13)
C3—C2—C1128.86 (14)C16—C15—H15A119.4
C7—C2—C1109.53 (12)C14—C15—H15A119.4
C4—C3—C2117.79 (14)C15—C16—C11122.87 (14)
C4—C3—H3A121.1C15—C16—H16A118.6
C2—C3—H3A121.1C11—C16—H16A118.6
C3—C4—C5120.79 (14)N1—C17—C18112.47 (12)
C3—C4—H4A119.6N1—C17—H17A109.1
C5—C4—H4A119.6C18—C17—H17A109.1
C6—C5—C4121.20 (14)N1—C17—H17B109.1
C6—C5—H5A119.4C18—C17—H17B109.1
C4—C5—H5A119.4H17A—C17—H17B107.8
C7—C6—C5118.27 (14)C19—C18—C17112.63 (12)
C7—C6—H6A120.9C19—C18—H18A109.1
C5—C6—H6A120.9C17—C18—H18A109.1
C6—C7—C2120.39 (14)C19—C18—H18B109.1
C6—C7—C8128.13 (14)C17—C18—H18B109.1
C2—C7—C8111.45 (13)H18A—C18—H18B107.8
C9—C8—C7103.59 (12)C20—C19—C18108.49 (12)
C9—C8—H8A111.0C20—C19—H19A110.0
C7—C8—H8A111.0C18—C19—H19A110.0
C9—C8—H8B111.0C20—C19—H19B110.0
C7—C8—H8B111.0C18—C19—H19B110.0
H8A—C8—H8B109.0H19A—C19—H19B108.4
C10—C9—C1120.65 (13)C19—C20—C21111.33 (12)
C10—C9—C8130.43 (13)C19—C20—H20A109.4
C1—C9—C8108.88 (12)C21—C20—H20A109.4
C9—C10—C11130.66 (13)C19—C20—H20B109.4
C9—C10—H10A114.7C21—C20—H20B109.4
C11—C10—H10A114.7H20A—C20—H20B108.0
C16—C11—C12115.92 (13)N1—C21—C20112.69 (11)
C16—C11—C10118.30 (13)N1—C21—H21A109.1
C12—C11—C10125.77 (13)C20—C21—H21A109.1
C13—C12—C11122.20 (13)N1—C21—H21B109.1
C13—C12—H12A118.9C20—C21—H21B109.1
C11—C12—H12A118.9H21A—C21—H21B107.8
O1—C1—C2—C3−5.5 (3)C9—C10—C11—C16−177.96 (16)
C9—C1—C2—C3174.07 (14)C9—C10—C11—C122.9 (3)
O1—C1—C2—C7177.72 (15)C16—C11—C12—C13−1.8 (2)
C9—C1—C2—C7−2.73 (16)C10—C11—C12—C13177.35 (14)
C7—C2—C3—C4−0.1 (2)C11—C12—C13—C141.4 (2)
C1—C2—C3—C4−176.58 (15)C17—N1—C14—C15−165.73 (14)
C2—C3—C4—C5−1.2 (2)C21—N1—C14—C15−26.1 (2)
C3—C4—C5—C61.4 (2)C17—N1—C14—C1315.4 (2)
C4—C5—C6—C7−0.2 (2)C21—N1—C14—C13155.05 (13)
C5—C6—C7—C2−1.1 (2)C12—C13—C14—N1179.27 (13)
C5—C6—C7—C8176.75 (15)C12—C13—C14—C150.3 (2)
C3—C2—C7—C61.3 (2)N1—C14—C15—C16179.56 (14)
C1—C2—C7—C6178.40 (13)C13—C14—C15—C16−1.5 (2)
C3—C2—C7—C8−176.88 (14)C14—C15—C16—C111.0 (3)
C1—C2—C7—C80.19 (17)C12—C11—C16—C150.6 (2)
C6—C7—C8—C9−175.67 (15)C10—C11—C16—C15−178.60 (15)
C2—C7—C8—C92.37 (16)C14—N1—C17—C18−170.28 (13)
O1—C1—C9—C105.7 (2)C21—N1—C17—C1849.17 (17)
C2—C1—C9—C10−173.86 (13)N1—C17—C18—C19−52.23 (18)
O1—C1—C9—C8−176.22 (15)C17—C18—C19—C2055.49 (17)
C2—C1—C9—C84.22 (15)C18—C19—C20—C21−56.53 (16)
C7—C8—C9—C10173.83 (15)C14—N1—C21—C20167.89 (13)
C7—C8—C9—C1−4.00 (15)C17—N1—C21—C20−51.05 (17)
C1—C9—C10—C11178.71 (14)C19—C20—C21—N155.19 (17)
C8—C9—C10—C111.1 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O1i0.972.443.3256 (18)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O1i0.972.443.3256 (18)152

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  EAU guidelines on prostate cancer.

Authors:  Axel Heidenreich; Gunnar Aus; Michel Bolla; Steven Joniau; Vsevolod B Matveev; Hans Peter Schmid; Filliberto Zattoni
Journal:  Eur Urol       Date:  2007-09-19       Impact factor: 20.096

Review 3.  Flavonoids: old and new aspects of a class of natural therapeutic drugs.

Authors:  G Di Carlo; N Mascolo; A A Izzo; F Capasso
Journal:  Life Sci       Date:  1999       Impact factor: 5.037

Review 4.  Dietary agents for chemoprevention of prostate cancer.

Authors:  Deeba N Syed; Yewseok Suh; Farrukh Afaq; Hasan Mukhtar
Journal:  Cancer Lett       Date:  2008-04-18       Impact factor: 8.679

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  4 in total

1.  (E)-2-(4-Bromo-benzyl-idene)indan-1-one.

Authors:  Mohamed Ashraf Ali; Rusli Ismail; Tan Soo Choon; Wan-Sin Loh; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11

2.  2-[(E)-4-(Dimethyl-amino)-benzyl-idene]indan-1-one.

Authors:  Mohamed Ashraf Ali; Rusli Ismail; Tan Soo Choon; Wan-Sin Loh; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

3.  3-Oxo-2,3-dihydro-1H-inden-4-yl acetate.

Authors:  Hong-Yi Lin; Che-Wei Chang; Hsing-Yang Tsai; Ming-Hui Luo; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

4.  7-Meth-oxy-indan-1-one.

Authors:  Yuan Jay Chang; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-03
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.