Literature DB >> 21589057

(E)-2-(3,4-Dimeth-oxy-benzyl-idene)-5,6-dimeth-oxy-2,3-dihydro-1H-inden-1-one.

Mohamed Ashraf Ali, Rusli Ismail, Soo Choon Tan, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(20)H(20)O(5), the 2,3-dihydro-1H-indene ring system is essentially planar [maximum deviation = 0.010 (1) Å] and is inclined at an angle of 4.09 (4)° with respect to the phenyl ring. The C=C bond has an E configuration. In the crystal, the mol-ecules are linked into chains propagating in [102] via inter-molecular C-H⋯O hydrogen bonds. The crystal structure is further consolidated by C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21589057      PMCID: PMC3009320          DOI: 10.1107/S1600536810041619

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the biological activity of chalcones, see: Nielsen et al. (1998 ▶); Go et al. (2005 ▶); Nowakowska (2007 ▶); Furusawa et al. (2005 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C20H20O5 M = 340.36 Monoclinic, a = 7.7991 (7) Å b = 7.2595 (6) Å c = 29.589 (2) Å β = 101.977 (3)° V = 1638.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.53 × 0.45 × 0.09 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.950, T max = 0.992 19303 measured reflections 5535 independent reflections 4471 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.124 S = 1.04 5535 reflections 230 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041619/hb5680sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041619/hb5680Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20O5F(000) = 720
Mr = 340.36Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6986 reflections
a = 7.7991 (7) Åθ = 2.7–31.7°
b = 7.2595 (6) ŵ = 0.10 mm1
c = 29.589 (2) ÅT = 100 K
β = 101.977 (3)°Plate, yellow
V = 1638.8 (2) Å30.53 × 0.45 × 0.09 mm
Z = 4
Bruker APEXII DUO CCD diffractometer5535 independent reflections
Radiation source: fine-focus sealed tube4471 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 31.8°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→11
Tmin = 0.950, Tmax = 0.992k = −10→10
19303 measured reflectionsl = −41→43
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0668P)2 + 0.3686P] where P = (Fo2 + 2Fc2)/3
5535 reflections(Δ/σ)max = 0.002
230 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.13991 (11)0.89751 (10)1.10930 (2)0.02109 (16)
O21.10936 (10)0.63257 (10)1.16292 (2)0.02089 (16)
O30.67192 (11)0.17121 (11)1.04585 (3)0.02565 (18)
O40.20749 (12)0.09725 (11)0.79852 (3)0.02789 (19)
O50.29534 (11)0.38568 (11)0.75804 (2)0.02474 (18)
C10.73939 (12)0.57231 (13)0.97826 (3)0.01539 (17)
H1A0.81440.56950.95590.018*
H1B0.65120.66720.96950.018*
C20.84490 (12)0.60464 (13)1.02641 (3)0.01469 (17)
C30.94756 (13)0.75715 (13)1.04280 (3)0.01598 (18)
H3A0.95710.85571.02340.019*
C41.03547 (13)0.75888 (13)1.08879 (3)0.01591 (18)
C51.01914 (13)0.60926 (13)1.11875 (3)0.01583 (18)
C60.91645 (13)0.45957 (13)1.10221 (3)0.01591 (17)
H6A0.90450.36131.12150.019*
C70.83024 (12)0.45901 (13)1.05551 (3)0.01495 (17)
C80.71294 (12)0.31778 (13)1.03029 (3)0.01670 (18)
C90.65574 (12)0.38678 (13)0.98188 (3)0.01564 (18)
C100.54838 (12)0.28635 (13)0.94942 (3)0.01632 (18)
H10A0.50900.17640.95980.020*
C110.48499 (12)0.32517 (13)0.90031 (3)0.01607 (18)
C120.37662 (13)0.19248 (13)0.87386 (3)0.01689 (18)
H12A0.34640.08660.88810.020*
C130.31431 (14)0.21748 (14)0.82688 (3)0.01865 (19)
C140.36029 (13)0.37598 (14)0.80457 (3)0.01844 (19)
C150.46461 (14)0.50818 (14)0.83057 (3)0.0205 (2)
H15A0.49420.61430.81630.025*
C160.52578 (14)0.48376 (14)0.87797 (3)0.0202 (2)
H16A0.59480.57460.89500.024*
C171.16649 (16)1.04933 (14)1.08102 (4)0.0240 (2)
H17A1.24471.13621.09910.036*
H17B1.05621.10801.06890.036*
H17C1.21651.00611.05590.036*
C181.10498 (16)0.48297 (16)1.19368 (3)0.0249 (2)
H18A1.18190.50851.22280.037*
H18B1.14250.37251.18080.037*
H18C0.98760.46691.19830.037*
C190.14395 (17)−0.05676 (16)0.81966 (4)0.0273 (2)
H19A0.0667−0.12760.79660.041*
H19B0.0813−0.01470.84240.041*
H19C0.2408−0.13220.83430.041*
C200.34068 (19)0.54410 (17)0.73445 (4)0.0317 (3)
H20A0.28630.53620.70230.048*
H20B0.46560.54960.73770.048*
H20C0.30060.65300.74750.048*
U11U22U33U12U13U23
O10.0295 (4)0.0158 (3)0.0161 (3)−0.0051 (3)0.0005 (3)0.0003 (2)
O20.0289 (4)0.0214 (3)0.0106 (3)−0.0031 (3)−0.0002 (3)0.0017 (2)
O30.0300 (4)0.0223 (4)0.0217 (3)−0.0077 (3)−0.0016 (3)0.0067 (3)
O40.0412 (5)0.0264 (4)0.0150 (3)−0.0166 (3)0.0035 (3)−0.0035 (3)
O50.0322 (4)0.0277 (4)0.0128 (3)−0.0068 (3)0.0013 (3)0.0024 (3)
C10.0150 (4)0.0183 (4)0.0122 (3)−0.0007 (3)0.0014 (3)0.0022 (3)
C20.0135 (4)0.0174 (4)0.0133 (4)0.0013 (3)0.0030 (3)0.0009 (3)
C30.0189 (4)0.0156 (4)0.0132 (4)0.0000 (3)0.0029 (3)0.0019 (3)
C40.0183 (4)0.0147 (4)0.0144 (4)−0.0004 (3)0.0026 (3)−0.0006 (3)
C50.0181 (4)0.0177 (4)0.0114 (3)0.0018 (3)0.0022 (3)0.0005 (3)
C60.0172 (4)0.0168 (4)0.0136 (4)0.0004 (3)0.0029 (3)0.0022 (3)
C70.0143 (4)0.0166 (4)0.0136 (4)0.0002 (3)0.0021 (3)0.0016 (3)
C80.0147 (4)0.0189 (4)0.0158 (4)−0.0005 (3)0.0017 (3)0.0018 (3)
C90.0146 (4)0.0179 (4)0.0139 (4)−0.0001 (3)0.0018 (3)0.0016 (3)
C100.0152 (4)0.0181 (4)0.0153 (4)−0.0006 (3)0.0025 (3)0.0009 (3)
C110.0149 (4)0.0183 (4)0.0149 (4)−0.0005 (3)0.0027 (3)−0.0006 (3)
C120.0196 (4)0.0171 (4)0.0146 (4)−0.0019 (3)0.0049 (3)−0.0007 (3)
C130.0219 (5)0.0188 (4)0.0155 (4)−0.0041 (4)0.0045 (3)−0.0035 (3)
C140.0198 (4)0.0216 (4)0.0135 (4)−0.0005 (4)0.0026 (3)0.0002 (3)
C150.0224 (5)0.0203 (4)0.0176 (4)−0.0035 (4)0.0016 (4)0.0031 (3)
C160.0211 (4)0.0205 (4)0.0174 (4)−0.0057 (4)0.0001 (3)0.0005 (3)
C170.0334 (6)0.0151 (4)0.0219 (4)−0.0044 (4)0.0020 (4)0.0017 (3)
C180.0312 (5)0.0270 (5)0.0147 (4)−0.0029 (4)0.0009 (4)0.0066 (4)
C190.0366 (6)0.0237 (5)0.0228 (5)−0.0125 (5)0.0091 (4)−0.0038 (4)
C200.0415 (7)0.0325 (6)0.0191 (5)−0.0071 (5)0.0013 (5)0.0088 (4)
O1—C41.3562 (11)C10—C111.4618 (12)
O1—C171.4247 (12)C10—H10A0.9300
O2—C51.3601 (11)C11—C161.3968 (14)
O2—C181.4220 (12)C11—C121.4072 (13)
O3—C81.2279 (12)C12—C131.3862 (13)
O4—C131.3674 (12)C12—H12A0.9300
O4—C191.4197 (13)C13—C141.4094 (14)
O5—C141.3667 (11)C14—C151.3839 (14)
O5—C201.4273 (14)C15—C161.3958 (13)
C1—C21.5084 (12)C15—H15A0.9300
C1—C91.5100 (14)C16—H16A0.9300
C1—H1A0.9700C17—H17A0.9600
C1—H1B0.9700C17—H17B0.9600
C2—C71.3832 (13)C17—H17C0.9600
C2—C31.3932 (13)C18—H18A0.9600
C3—C41.3909 (12)C18—H18B0.9600
C3—H3A0.9300C18—H18C0.9600
C4—C51.4244 (13)C19—H19A0.9600
C5—C61.3781 (13)C19—H19B0.9600
C6—C71.4057 (12)C19—H19C0.9600
C6—H6A0.9300C20—H20A0.9600
C7—C81.4703 (13)C20—H20B0.9600
C8—C91.4955 (12)C20—H20C0.9600
C9—C101.3497 (13)
C4—O1—C17117.28 (7)C13—C12—C11120.88 (9)
C5—O2—C18116.34 (8)C13—C12—H12A119.6
C13—O4—C19117.15 (8)C11—C12—H12A119.6
C14—O5—C20117.16 (8)O4—C13—C12125.03 (9)
C2—C1—C9103.34 (7)O4—C13—C14114.56 (8)
C2—C1—H1A111.1C12—C13—C14120.41 (9)
C9—C1—H1A111.1O5—C14—C15125.21 (9)
C2—C1—H1B111.1O5—C14—C13115.89 (9)
C9—C1—H1B111.1C15—C14—C13118.89 (9)
H1A—C1—H1B109.1C14—C15—C16120.63 (9)
C7—C2—C3120.42 (8)C14—C15—H15A119.7
C7—C2—C1111.71 (8)C16—C15—H15A119.7
C3—C2—C1127.88 (8)C15—C16—C11121.08 (9)
C4—C3—C2118.61 (8)C15—C16—H16A119.5
C4—C3—H3A120.7C11—C16—H16A119.5
C2—C3—H3A120.7O1—C17—H17A109.5
O1—C4—C3124.94 (8)O1—C17—H17B109.5
O1—C4—C5114.23 (8)H17A—C17—H17B109.5
C3—C4—C5120.82 (8)O1—C17—H17C109.5
O2—C5—C6125.87 (9)H17A—C17—H17C109.5
O2—C5—C4114.07 (8)H17B—C17—H17C109.5
C6—C5—C4120.05 (8)O2—C18—H18A109.5
C5—C6—C7118.39 (9)O2—C18—H18B109.5
C5—C6—H6A120.8H18A—C18—H18B109.5
C7—C6—H6A120.8O2—C18—H18C109.5
C2—C7—C6121.70 (9)H18A—C18—H18C109.5
C2—C7—C8109.88 (8)H18B—C18—H18C109.5
C6—C7—C8128.41 (9)O4—C19—H19A109.5
O3—C8—C7126.65 (8)O4—C19—H19B109.5
O3—C8—C9126.89 (9)H19A—C19—H19B109.5
C7—C8—C9106.45 (8)O4—C19—H19C109.5
C10—C9—C8121.23 (9)H19A—C19—H19C109.5
C10—C9—C1130.15 (8)H19B—C19—H19C109.5
C8—C9—C1108.62 (7)O5—C20—H20A109.5
C9—C10—C11129.43 (9)O5—C20—H20B109.5
C9—C10—H10A115.3H20A—C20—H20B109.5
C11—C10—H10A115.3O5—C20—H20C109.5
C16—C11—C12118.07 (8)H20A—C20—H20C109.5
C16—C11—C10124.47 (8)H20B—C20—H20C109.5
C12—C11—C10117.45 (9)
C9—C1—C2—C70.61 (11)C7—C8—C9—C10178.86 (9)
C9—C1—C2—C3−179.23 (10)O3—C8—C9—C1−179.52 (10)
C7—C2—C3—C40.46 (15)C7—C8—C9—C1−0.30 (11)
C1—C2—C3—C4−179.72 (9)C2—C1—C9—C10−179.22 (10)
C17—O1—C4—C3−2.52 (15)C2—C1—C9—C8−0.16 (10)
C17—O1—C4—C5178.15 (9)C8—C9—C10—C11−176.82 (10)
C2—C3—C4—O1179.82 (9)C1—C9—C10—C112.15 (18)
C2—C3—C4—C5−0.89 (15)C9—C10—C11—C16−1.16 (17)
C18—O2—C5—C64.19 (15)C9—C10—C11—C12178.32 (10)
C18—O2—C5—C4−176.80 (9)C16—C11—C12—C130.89 (15)
O1—C4—C5—O20.83 (13)C10—C11—C12—C13−178.62 (9)
C3—C4—C5—O2−178.53 (9)C19—O4—C13—C125.66 (17)
O1—C4—C5—C6179.91 (9)C19—O4—C13—C14−174.51 (10)
C3—C4—C5—C60.55 (15)C11—C12—C13—O4−179.43 (10)
O2—C5—C6—C7179.19 (9)C11—C12—C13—C140.74 (16)
C4—C5—C6—C70.23 (15)C20—O5—C14—C150.73 (16)
C3—C2—C7—C60.33 (15)C20—O5—C14—C13−179.60 (10)
C1—C2—C7—C6−179.52 (9)O4—C13—C14—O5−1.25 (14)
C3—C2—C7—C8179.02 (9)C12—C13—C14—O5178.59 (10)
C1—C2—C7—C8−0.83 (11)O4—C13—C14—C15178.44 (10)
C5—C6—C7—C2−0.67 (15)C12—C13—C14—C15−1.72 (16)
C5—C6—C7—C8−179.10 (10)O5—C14—C15—C16−179.29 (10)
C2—C7—C8—O3179.92 (10)C13—C14—C15—C161.05 (16)
C6—C7—C8—O3−1.51 (18)C14—C15—C16—C110.60 (17)
C2—C7—C8—C90.70 (11)C12—C11—C16—C15−1.57 (16)
C6—C7—C8—C9179.27 (10)C10—C11—C16—C15177.91 (10)
O3—C8—C9—C10−0.35 (17)
Cg1 is the cetroid of C2–C7 benzene ring.
D—H···AD—HH···AD···AD—H···A
C18—H18A···O4i0.962.343.0939 (13)135
C1—H1A···Cg1ii0.972.643.4804 (11)146
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the cetroid of C2–C7 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18A⋯O4i0.962.343.0939 (13)135
C1—H1ACg1ii0.972.643.4804 (11)146

Symmetry codes: (i) ; (ii) .

  5 in total

Review 1.  A review of anti-infective and anti-inflammatory chalcones.

Authors:  Zdzisława Nowakowska
Journal:  Eur J Med Chem       Date:  2006-11-15       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Antileishmanial chalcones: statistical design, synthesis, and three-dimensional quantitative structure-activity relationship analysis.

Authors:  S F Nielsen; S B Christensen; G Cruciani; A Kharazmi; T Liljefors
Journal:  J Med Chem       Date:  1998-11-19       Impact factor: 7.446

Review 4.  Chalcones: an update on cytotoxic and chemoprotective properties.

Authors:  M L Go; X Wu; X L Liu
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  3-Oxo-2,3-dihydro-1H-inden-4-yl acetate.

Authors:  Hong-Yi Lin; Che-Wei Chang; Hsing-Yang Tsai; Ming-Hui Luo; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

2.  7-Meth-oxy-indan-1-one.

Authors:  Yuan Jay Chang; Kew-Yu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-03

3.  2-(Di-phenyl-methyl-idene)-2,3-di-hydro-1H-inden-1-one.

Authors:  Tao Zhang; Vilmar Bandero; Tom McCabe; Neil Frankish; Helen Sheridan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-24
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.