Literature DB >> 21589054

3-(Pyridin-2-yl)coumarin.

Yu-Xia Da1, Zheng-Jun Quan.   

Abstract

In the title compound, C(14)H(9)NO(2), the dihedral angle between the pyridine ring and the lactone ring is 10.40 (3)°. The coumarin ring system is nearly planar, with a dihedral angle of 1.40 (2)° between the lactone and benzene rings. An intra-molecular C-H⋯O hydrogen bond occurs. In the crystal, inversion dimers linked by pairs of C-H⋯O inter-actions occur, generating R(2) (2)(14) loops.

Entities:  

Year:  2010        PMID: 21589054      PMCID: PMC3009111          DOI: 10.1107/S1600536810039796

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the structures and properties of coumarins, see: Fylaktakidou et al. (2004 ▶); Griffiths et al. (1995 ▶); Moffett (1964 ▶); Ren & Huo (2008 ▶); Ren et al. (2010 ▶); Trenor et al. (2004 ▶); Walshe et al. (1997 ▶); Yu et al. (2006 ▶); Yu, Yang et al. (2010 ▶); Yu, Zhang et al. (2010 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H9NO2 M = 223.22 Orthorhombic, a = 7.1107 (3) Å b = 13.9635 (5) Å c = 21.2867 (9) Å V = 2113.56 (15) Å3 Z = 8 Cu Kα radiation μ = 0.77 mm−1 T = 293 K 0.31 × 0.22 × 0.11 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.795, T max = 0.920 4495 measured reflections 2055 independent reflections 1581 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.230 S = 1.09 2055 reflections 154 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039796/hb5667sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039796/hb5667Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H9NO2Dx = 1.403 Mg m3
Mr = 223.22Melting point = 416–417 K
Orthorhombic, PbcaCu Kα radiation, λ = 1.54184 Å
a = 7.1107 (3) ÅCell parameters from 4495 reflections
b = 13.9635 (5) Åθ = 4.2–72.5°
c = 21.2867 (9) ŵ = 0.77 mm1
V = 2113.56 (15) Å3T = 293 K
Z = 8Block, colourless
F(000) = 9280.31 × 0.22 × 0.11 mm
Siemens SMART CCD diffractometer2055 independent reflections
Radiation source: fine-focus sealed tube1581 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 72.5°, θmin = 4.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −5→8
Tmin = 0.795, Tmax = 0.920k = −15→17
4495 measured reflectionsl = −16→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.1725P)2] where P = (Fo2 + 2Fc2)/3
2055 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2429 (4)0.14529 (15)0.41263 (10)0.0430 (6)
C20.3906 (4)0.20503 (18)0.42654 (12)0.0544 (7)
H20.39350.23810.46450.065*
C30.5343 (4)0.21543 (19)0.38377 (14)0.0596 (7)
H30.63460.25590.39280.072*
C40.5307 (4)0.1655 (2)0.32686 (13)0.0577 (7)
H40.62790.17300.29800.069*
C50.3826 (4)0.10503 (18)0.31356 (11)0.0505 (6)
H50.38110.07160.27580.061*
C60.2348 (3)0.09346 (15)0.35618 (10)0.0408 (5)
C70.0765 (3)0.03304 (15)0.34618 (9)0.0410 (5)
H70.0717−0.00300.30950.049*
C8−0.0669 (3)0.02542 (14)0.38726 (9)0.0393 (5)
C9−0.0573 (4)0.08126 (16)0.44606 (10)0.0448 (6)
C10−0.2310 (3)−0.03764 (15)0.37410 (9)0.0396 (5)
C11−0.3687 (4)−0.06205 (18)0.41772 (11)0.0497 (6)
H11−0.3634−0.03770.45830.060*
C12−0.5124 (4)−0.1222 (2)0.40050 (12)0.0562 (7)
H12−0.6053−0.13860.42930.067*
C13−0.5179 (4)−0.15823 (19)0.34010 (12)0.0541 (6)
H13−0.6128−0.19970.32730.065*
C14−0.3768 (4)−0.13020 (18)0.29945 (11)0.0507 (6)
H14−0.3802−0.15380.25860.061*
N1−0.2370 (3)−0.07198 (14)0.31462 (8)0.0462 (5)
O10.0984 (3)0.13797 (12)0.45491 (8)0.0503 (5)
O2−0.1716 (3)0.08250 (16)0.48780 (9)0.0668 (6)
U11U22U33U12U13U23
C10.0534 (12)0.0348 (10)0.0408 (11)0.0064 (9)−0.0047 (9)−0.0012 (8)
C20.0652 (15)0.0419 (11)0.0562 (13)0.0006 (11)−0.0111 (11)−0.0058 (9)
C30.0567 (14)0.0453 (12)0.0768 (16)−0.0083 (11)−0.0103 (13)0.0041 (11)
C40.0518 (13)0.0560 (14)0.0652 (15)−0.0017 (12)0.0045 (12)0.0062 (11)
C50.0541 (13)0.0494 (12)0.0479 (12)0.0035 (10)0.0039 (10)−0.0010 (9)
C60.0469 (12)0.0361 (10)0.0394 (10)0.0070 (8)−0.0045 (8)−0.0012 (8)
C70.0508 (12)0.0398 (10)0.0324 (10)0.0056 (9)−0.0016 (8)−0.0047 (7)
C80.0490 (12)0.0364 (9)0.0325 (9)0.0065 (8)−0.0011 (8)−0.0021 (8)
C90.0533 (13)0.0439 (11)0.0372 (10)0.0057 (10)0.0034 (9)−0.0063 (8)
C100.0483 (12)0.0365 (10)0.0341 (10)0.0059 (8)−0.0010 (8)0.0021 (7)
C110.0586 (14)0.0499 (12)0.0406 (11)0.0023 (11)0.0081 (10)−0.0003 (9)
C120.0564 (14)0.0587 (14)0.0535 (13)−0.0035 (12)0.0129 (11)0.0070 (10)
C130.0563 (14)0.0494 (12)0.0566 (13)−0.0093 (11)−0.0074 (11)0.0059 (10)
C140.0626 (15)0.0479 (12)0.0416 (11)−0.0051 (10)−0.0051 (10)−0.0017 (9)
N10.0555 (11)0.0474 (10)0.0357 (9)−0.0036 (8)0.0007 (8)−0.0011 (7)
O10.0630 (11)0.0465 (9)0.0415 (8)−0.0009 (7)0.0000 (7)−0.0119 (6)
O20.0746 (13)0.0742 (13)0.0514 (10)−0.0078 (11)0.0216 (9)−0.0240 (8)
C1—O11.369 (3)C8—C91.476 (3)
C1—C21.374 (4)C8—C101.489 (3)
C1—C61.404 (3)C9—O21.204 (3)
C2—C31.376 (4)C9—O11.375 (3)
C2—H20.9300C10—N11.355 (3)
C3—C41.398 (4)C10—C111.392 (3)
C3—H30.9300C11—C121.373 (4)
C4—C51.379 (4)C11—H110.9300
C4—H40.9300C12—C131.381 (4)
C5—C61.398 (3)C12—H120.9300
C5—H50.9300C13—C141.382 (4)
C6—C71.423 (3)C13—H130.9300
C7—C81.347 (3)C14—N11.324 (3)
C7—H70.9300C14—H140.9300
O1—C1—C2118.5 (2)C7—C8—C10121.18 (18)
O1—C1—C6119.5 (2)C9—C8—C10120.52 (19)
C2—C1—C6121.9 (2)O2—C9—O1115.7 (2)
C1—C2—C3119.3 (2)O2—C9—C8127.0 (2)
C1—C2—H2120.4O1—C9—C8117.2 (2)
C3—C2—H2120.4N1—C10—C11121.0 (2)
C2—C3—C4120.5 (2)N1—C10—C8114.20 (19)
C2—C3—H3119.8C11—C10—C8124.82 (19)
C4—C3—H3119.8C12—C11—C10119.7 (2)
C5—C4—C3119.8 (3)C12—C11—H11120.2
C5—C4—H4120.1C10—C11—H11120.2
C3—C4—H4120.1C11—C12—C13119.5 (2)
C4—C5—C6120.8 (2)C11—C12—H12120.2
C4—C5—H5119.6C13—C12—H12120.2
C6—C5—H5119.6C12—C13—C14117.4 (2)
C5—C6—C1117.7 (2)C12—C13—H13121.3
C5—C6—C7124.5 (2)C14—C13—H13121.3
C1—C6—C7117.8 (2)N1—C14—C13124.5 (2)
C8—C7—C6123.25 (19)N1—C14—H14117.8
C8—C7—H7118.4C13—C14—H14117.8
C6—C7—H7118.4C14—N1—C10118.0 (2)
C7—C8—C9118.3 (2)C1—O1—C9123.88 (17)
O1—C1—C2—C3−178.1 (2)C10—C8—C9—O1−179.93 (19)
C6—C1—C2—C30.7 (4)C7—C8—C10—N1−10.5 (3)
C1—C2—C3—C4−0.3 (4)C9—C8—C10—N1169.58 (19)
C2—C3—C4—C5−0.3 (4)C7—C8—C10—C11168.8 (2)
C3—C4—C5—C60.5 (4)C9—C8—C10—C11−11.1 (3)
C4—C5—C6—C1−0.1 (3)N1—C10—C11—C120.4 (4)
C4—C5—C6—C7179.7 (2)C8—C10—C11—C12−178.9 (2)
O1—C1—C6—C5178.3 (2)C10—C11—C12—C130.3 (4)
C2—C1—C6—C5−0.5 (3)C11—C12—C13—C14−0.7 (4)
O1—C1—C6—C7−1.6 (3)C12—C13—C14—N10.4 (4)
C2—C1—C6—C7179.7 (2)C13—C14—N1—C100.2 (4)
C5—C6—C7—C8−177.9 (2)C11—C10—N1—C14−0.7 (3)
C1—C6—C7—C81.8 (3)C8—C10—N1—C14178.7 (2)
C6—C7—C8—C9−1.1 (3)C2—C1—O1—C9179.5 (2)
C6—C7—C8—C10178.96 (18)C6—C1—O1—C90.7 (3)
C7—C8—C9—O2−179.5 (3)O2—C9—O1—C1179.8 (2)
C10—C8—C9—O20.4 (4)C8—C9—O1—C10.1 (3)
C7—C8—C9—O10.2 (3)
D—H···AD—HH···AD···AD—H···A
C11—H11···O20.932.252.875 (3)124
C12—H12···O2i0.932.503.318 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯O20.932.252.875 (3)124
C12—H12⋯O2i0.932.503.318 (3)147

Symmetry code: (i) .

  6 in total

1.  CENTRAL NERVOUS SYSTEM DEPRESSANTS. VII. PYRIDYL COUMARINS.

Authors:  R B MOFFETT
Journal:  J Med Chem       Date:  1964-07       Impact factor: 7.446

Review 2.  Coumarins in polymers: from light harvesting to photo-cross-linkable tissue scaffolds.

Authors:  Scott R Trenor; Allan R Shultz; Brian J Love; Timothy E Long
Journal:  Chem Rev       Date:  2004-06       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  The preparation of a molecular imprinted polymer to 7-hydroxycoumarin and its use as a solid-phase extraction material.

Authors:  M Walshe; J Howarth; M T Kelly; R O'Kennedy; M R Smyth
Journal:  J Pharm Biomed Anal       Date:  1997-10       Impact factor: 3.935

Review 5.  Natural and synthetic coumarin derivatives with anti-inflammatory/ antioxidant activities.

Authors:  Konstantina C Fylaktakidou; Dimitra J Hadjipavlou-Litina; Konstantinos E Litinas; Demetrios N Nicolaides
Journal:  Curr Pharm Des       Date:  2004       Impact factor: 3.116

6.  Coumarin-based, electron-trapping iridium complexes as highly efficient and stable phosphorescent emitters for organic light-emitting diodes.

Authors:  Xiaofan Ren; Marina E Kondakova; David J Giesen; Manju Rajeswaran; Marcel Madaras; William C Lenhart
Journal:  Inorg Chem       Date:  2010-02-15       Impact factor: 5.165

  6 in total
  1 in total

1.  (Z)-3-(1-Hy-droxy-3-oxobut-1-en-yl)-6-nitro-2H-chromen-2-one.

Authors:  Nishith Saurav Topno; Venkataswamy Tangeti; H Surya Prakash Rao; R Krishna
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23
  1 in total

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