Literature DB >> 21589048

Flavokavain B from the rhizome of Alpinia mutica Roxb.

Hasnah Mohd Sirat, Nor Akmalazura Jani, Hazrina Hazni, Khalijah Awang, Seik Weng Ng.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: (E)-1-(2-hydroxy-4,6-dimethoxyphenyl)-3-phenylprop-2-en-1-one], C(17)H(16)O(4), has an aromatic ring at both ends of the -CH= CH-C(=O)- fragment with the -CH=CH- bond in a trans configuration. The phenyl ring is nearly coplanar with this fragment [dihedral angle 4.8 (3) °] as is the hy-droxy-ldimeth-oxy-lphenyl unit [dihedral angle 6.3 (3) °]. The hy-droxy group is the donor in an intra-molecular hydrogen bond to the double-bonded O atom.

Entities:  

Year:  2010        PMID: 21589048      PMCID: PMC3009113          DOI: 10.1107/S1600536810041395

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation and spectroscopic characterization of the title compound, see: Flores et al. (2007 ▶); Xuan et al. (2008 ▶).

Experimental

Crystal data

C17H16O4 M = 284.30 Orthorhombic, a = 4.9668 (10) Å b = 12.305 (3) Å c = 22.552 (5) Å V = 1378.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.40 × 0.10 × 0.05 mm

Data collection

Bruker SMART APEX diffractometer 10723 measured reflections 1449 independent reflections 1162 reflections with I > 2σ(I) R int = 0.089

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.128 S = 1.09 1449 reflections 197 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810041395/fl2321sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041395/fl2321Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16O4F(000) = 600
Mr = 284.30Dx = 1.370 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1135 reflections
a = 4.9668 (10) Åθ = 3.2–21.7°
b = 12.305 (3) ŵ = 0.10 mm1
c = 22.552 (5) ÅT = 100 K
V = 1378.3 (5) Å3Prism, faint yellow
Z = 40.40 × 0.10 × 0.05 mm
Bruker SMART APEX diffractometer1162 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.089
graphiteθmax = 25.0°, θmin = 1.8°
ω scansh = −5→5
10723 measured reflectionsk = −14→14
1449 independent reflectionsl = −26→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0736P)2 + 0.021P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
1449 reflectionsΔρmax = 0.20 e Å3
197 parametersΔρmin = −0.26 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.026 (5)
xyzUiso*/Ueq
O10.5688 (6)0.96830 (19)0.22125 (11)0.0250 (7)
O20.3291 (6)0.9379 (2)0.12751 (11)0.0260 (7)
H20.440 (7)0.958 (4)0.1541 (14)0.048 (15)*
O3−0.3912 (5)0.68445 (19)0.12028 (10)0.0245 (7)
O40.0995 (6)0.72577 (18)0.29718 (11)0.0272 (7)
C10.7327 (8)0.9257 (3)0.40417 (17)0.0228 (9)
C20.5796 (9)0.8616 (3)0.44201 (16)0.0283 (10)
H2A0.43690.81910.42620.034*
C30.6311 (10)0.8586 (3)0.50210 (18)0.0349 (10)
H30.52300.81500.52740.042*
C40.8406 (9)0.9191 (3)0.52537 (17)0.0323 (11)
H40.87620.91770.56680.039*
C50.9976 (9)0.9815 (3)0.48823 (18)0.0310 (10)
H51.14181.02290.50420.037*
C60.9476 (9)0.9846 (3)0.42798 (17)0.0279 (10)
H61.05941.02670.40270.034*
C70.6751 (8)0.9328 (3)0.34039 (17)0.0257 (9)
H70.79940.97230.31670.031*
C80.4658 (8)0.8891 (3)0.31275 (16)0.0256 (9)
H80.33810.84930.33540.031*
C90.4237 (8)0.8998 (3)0.24859 (16)0.0230 (9)
C100.2169 (8)0.8393 (3)0.21647 (16)0.0196 (8)
C110.1737 (8)0.8639 (3)0.15591 (16)0.0208 (9)
C12−0.0285 (8)0.8174 (3)0.12220 (16)0.0230 (9)
H12−0.05860.83920.08230.028*
C13−0.1857 (8)0.7377 (3)0.14850 (16)0.0213 (9)
C14−0.1454 (8)0.7058 (3)0.20702 (16)0.0221 (8)
H14−0.25440.65040.22380.027*
C150.0513 (8)0.7543 (3)0.24038 (15)0.0211 (9)
C16−0.0619 (9)0.6404 (3)0.32205 (16)0.0298 (10)
H16A−0.01150.62920.36360.045*
H16B−0.03200.57310.29980.045*
H16C−0.25250.66060.31970.045*
C17−0.4398 (9)0.7113 (3)0.05989 (15)0.0287 (10)
H17A−0.59070.66790.04490.043*
H17B−0.27830.69570.03640.043*
H17C−0.48390.78870.05670.043*
U11U22U33U12U13U23
O10.0269 (15)0.0177 (12)0.0304 (15)−0.0032 (12)0.0027 (13)0.0014 (11)
O20.0313 (17)0.0199 (13)0.0266 (16)−0.0038 (13)0.0000 (14)0.0034 (12)
O30.0254 (15)0.0218 (13)0.0263 (14)−0.0010 (12)−0.0042 (13)−0.0008 (11)
O40.0393 (17)0.0180 (12)0.0243 (14)−0.0075 (13)−0.0017 (13)0.0058 (11)
C10.026 (2)0.0154 (19)0.027 (2)0.0059 (17)−0.0030 (18)−0.0031 (16)
C20.031 (2)0.0254 (19)0.028 (2)−0.006 (2)−0.002 (2)−0.0019 (17)
C30.038 (3)0.037 (2)0.030 (2)−0.006 (2)0.001 (2)0.0001 (19)
C40.044 (3)0.026 (2)0.027 (2)0.001 (2)−0.006 (2)0.0006 (17)
C50.035 (3)0.021 (2)0.037 (2)−0.0020 (19)−0.006 (2)−0.0040 (17)
C60.032 (2)0.0211 (19)0.031 (2)−0.0026 (19)−0.0017 (19)0.0021 (17)
C70.028 (2)0.0173 (18)0.032 (2)−0.0015 (18)0.005 (2)0.0007 (17)
C80.030 (2)0.0205 (19)0.026 (2)−0.0034 (17)−0.0005 (19)−0.0006 (16)
C90.024 (2)0.0154 (16)0.029 (2)0.0021 (17)0.0054 (19)−0.0024 (16)
C100.022 (2)0.0140 (17)0.023 (2)0.0009 (15)0.0026 (17)−0.0038 (15)
C110.025 (2)0.0115 (17)0.025 (2)0.0016 (16)0.0052 (18)0.0015 (15)
C120.030 (2)0.0202 (19)0.0191 (19)0.0022 (17)−0.0020 (18)−0.0002 (15)
C130.024 (2)0.0159 (17)0.025 (2)0.0029 (16)−0.0010 (17)−0.0036 (15)
C140.022 (2)0.0158 (16)0.029 (2)0.0009 (16)0.0002 (18)0.0005 (15)
C150.030 (2)0.0139 (16)0.0197 (18)0.0015 (16)0.0000 (18)−0.0011 (14)
C160.043 (3)0.0207 (18)0.026 (2)−0.0075 (19)−0.002 (2)0.0089 (16)
C170.036 (3)0.027 (2)0.024 (2)−0.001 (2)−0.001 (2)−0.0043 (16)
O1—C91.269 (4)C7—C81.326 (5)
O2—C111.354 (4)C7—H70.9500
O2—H20.85 (1)C8—C91.468 (5)
O3—C131.370 (5)C8—H80.9500
O3—C171.422 (4)C9—C101.461 (5)
O4—C151.349 (4)C10—C111.415 (5)
O4—C161.436 (4)C10—C151.436 (5)
C1—C21.389 (5)C11—C121.384 (5)
C1—C61.397 (5)C12—C131.386 (5)
C1—C71.469 (5)C12—H120.9500
C2—C31.380 (5)C13—C141.391 (5)
C2—H2A0.9500C14—C151.370 (5)
C3—C41.383 (6)C14—H140.9500
C3—H30.9500C16—H16A0.9800
C4—C51.378 (6)C16—H16B0.9800
C4—H40.9500C16—H16C0.9800
C5—C61.382 (5)C17—H17A0.9800
C5—H50.9500C17—H17B0.9800
C6—H60.9500C17—H17C0.9800
C11—O2—H2103 (3)C11—C10—C15115.5 (3)
C13—O3—C17117.4 (3)C11—C10—C9118.4 (3)
C15—O4—C16117.5 (3)C15—C10—C9126.0 (3)
C2—C1—C6118.5 (4)O2—C11—C12115.6 (3)
C2—C1—C7121.9 (4)O2—C11—C10120.9 (4)
C6—C1—C7119.6 (4)C12—C11—C10123.5 (3)
C3—C2—C1121.1 (4)C11—C12—C13117.8 (3)
C3—C2—H2A119.4C11—C12—H12121.1
C1—C2—H2A119.4C13—C12—H12121.1
C2—C3—C4119.8 (4)O3—C13—C12124.0 (3)
C2—C3—H3120.1O3—C13—C14114.4 (3)
C4—C3—H3120.1C12—C13—C14121.6 (4)
C5—C4—C3119.7 (4)C15—C14—C13120.0 (4)
C5—C4—H4120.2C15—C14—H14120.0
C3—C4—H4120.2C13—C14—H14120.0
C4—C5—C6120.7 (4)O4—C15—C14122.3 (3)
C4—C5—H5119.6O4—C15—C10116.4 (3)
C6—C5—H5119.6C14—C15—C10121.3 (3)
C5—C6—C1120.1 (4)O4—C16—H16A109.5
C5—C6—H6120.0O4—C16—H16B109.5
C1—C6—H6120.0H16A—C16—H16B109.5
C8—C7—C1126.1 (4)O4—C16—H16C109.5
C8—C7—H7117.0H16A—C16—H16C109.5
C1—C7—H7117.0H16B—C16—H16C109.5
C7—C8—C9122.6 (4)O3—C17—H17A109.5
C7—C8—H8118.7O3—C17—H17B109.5
C9—C8—H8118.7H17A—C17—H17B109.5
O1—C9—C10119.8 (3)O3—C17—H17C109.5
O1—C9—C8117.2 (4)H17A—C17—H17C109.5
C10—C9—C8122.9 (3)H17B—C17—H17C109.5
C6—C1—C2—C32.3 (6)C15—C10—C11—C125.5 (5)
C7—C1—C2—C3−177.9 (4)C9—C10—C11—C12−175.4 (3)
C1—C2—C3—C4−0.8 (6)O2—C11—C12—C13177.2 (3)
C2—C3—C4—C5−0.4 (6)C10—C11—C12—C13−4.0 (5)
C3—C4—C5—C60.2 (6)C17—O3—C13—C121.6 (5)
C4—C5—C6—C11.3 (6)C17—O3—C13—C14−178.6 (3)
C2—C1—C6—C5−2.5 (6)C11—C12—C13—O3−179.6 (3)
C7—C1—C6—C5177.7 (4)C11—C12—C13—C140.7 (5)
C2—C1—C7—C86.2 (6)O3—C13—C14—C15−178.9 (3)
C6—C1—C7—C8−173.9 (4)C12—C13—C14—C150.8 (6)
C1—C7—C8—C9−179.8 (4)C16—O4—C15—C140.8 (5)
C7—C8—C9—O1−12.0 (5)C16—O4—C15—C10−179.6 (3)
C7—C8—C9—C10170.8 (4)C13—C14—C15—O4−179.6 (3)
O1—C9—C10—C11−3.8 (5)C13—C14—C15—C100.9 (6)
C8—C9—C10—C11173.4 (3)C11—C10—C15—O4176.6 (3)
O1—C9—C10—C15175.3 (3)C9—C10—C15—O4−2.5 (5)
C8—C9—C10—C15−7.5 (6)C11—C10—C15—C14−3.8 (5)
C15—C10—C11—O2−175.9 (3)C9—C10—C15—C14177.1 (4)
C9—C10—C11—O23.3 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···O10.85 (1)1.65 (2)2.455 (4)157 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O10.85 (1)1.65 (2)2.455 (4)157 (4)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Leishmanicidal constituents from the leaves of Piper rusbyi.

Authors:  Ninoska Flores; Gabriela Cabrera; Ignacio A Jiménez; Jose Piñero; Alberto Giménez; Genevieve Bourdy; Fernando Cortés-Selva; Isabel L Bazzocchi
Journal:  Planta Med       Date:  2007-03-12       Impact factor: 3.352

3.  Efficacy of extracting solvents to chemical components of kava (Piper methysticum) roots.

Authors:  Tran Dang Xuan; Masakazu Fukuta; Ao Chang Wei; Abdelnaser Abdelghany Elzaawely; Tran Dang Khanh; Shinkichi Tawata
Journal:  J Nat Med       Date:  2007-11-28       Impact factor: 2.343

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.