Literature DB >> 21589018

4,4'-Dimeth-oxy-2,2'-[(butane-1,4-diyldi-oxy)bis-(nitrilo-methyl-idyne)]diphenol.

Yin-Xia Sun1, Xiu-Yan Dong, Hu Zhao.   

Abstract

The title Schiff base bis-oxime compound, C(20)H(24)N(2)O(6), lies across an inversion centre and adopts an E configuration with respect to the C=N bond. In the mol-ecule, the oxime group is roughly coplanar with the benzene ring, forming a dihedral angle of 1.77 (2)°. An intra-molecular O-H⋯N hydrogen bond forms a six-membered ring with an S(6) motif. Weak inter-molecular C-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2010        PMID: 21589018      PMCID: PMC3009145          DOI: 10.1107/S1600536810040511

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of Schiff base compounds, see: Dong & Ding (2008 ▶); Dong et al. (2007 ▶, 2009b ▶); Koizumi et al. (2005 ▶); Lu et al. (2006 ▶). For the synthesis, see: Dong et al. (2009a ▶).

Experimental

Crystal data

C20H24N2O6 M = 388.41 Monoclinic, a = 4.7310 (4) Å b = 17.1418 (16) Å c = 12.2648 (12) Å β = 90.981 (1)° V = 994.50 (16) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.50 × 0.22 × 0.18 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 4976 measured reflections 1765 independent reflections 834 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.149 S = 1.02 1765 reflections 128 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810040511/xu5040sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040511/xu5040Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N2O6F(000) = 412
Mr = 388.41Dx = 1.297 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 796 reflections
a = 4.7310 (4) Åθ = 2.4–24.5°
b = 17.1418 (16) ŵ = 0.10 mm1
c = 12.2648 (12) ÅT = 298 K
β = 90.981 (1)°Needle, pale-yellow
V = 994.50 (16) Å30.50 × 0.22 × 0.18 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer834 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.069
graphiteθmax = 25.0°, θmin = 2.0°
φ and ω scansh = −5→5
4976 measured reflectionsk = −20→18
1765 independent reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0562P)2] where P = (Fo2 + 2Fc2)/3
1765 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4274 (5)0.32971 (13)0.62366 (17)0.0426 (7)
O10.2476 (4)0.37363 (10)0.55503 (13)0.0495 (6)
O20.6869 (5)0.27865 (12)0.80239 (14)0.0626 (7)
H20.57440.30540.76720.094*
O31.2686 (5)0.07207 (12)0.54439 (19)0.0669 (7)
C10.1003 (7)0.43013 (16)0.6187 (2)0.0494 (9)
H1A0.23360.46420.65620.059*
H1B−0.01470.40430.67260.059*
C2−0.0830 (7)0.47634 (15)0.5412 (2)0.0486 (9)
H2A−0.19980.51160.58290.058*
H2B−0.20800.44080.50210.058*
C30.5649 (7)0.27896 (16)0.5696 (2)0.0407 (8)
H30.53410.27520.49470.049*
C40.7676 (6)0.22699 (15)0.6220 (2)0.0381 (7)
C50.8222 (7)0.22862 (17)0.7338 (2)0.0453 (8)
C61.0185 (8)0.17800 (19)0.7794 (2)0.0586 (10)
H61.05210.17810.85440.070*
C71.1646 (8)0.12723 (18)0.7136 (3)0.0589 (10)
H71.29990.09420.74440.071*
C81.1118 (7)0.12492 (17)0.6016 (2)0.0500 (9)
C90.9145 (6)0.17495 (16)0.5571 (2)0.0420 (8)
H90.87870.17400.48230.050*
C101.2332 (8)0.07222 (19)0.4288 (3)0.0747 (12)
H10A1.04140.05890.40990.112*
H10B1.35880.03470.39750.112*
H10C1.27570.12320.40100.112*
U11U22U33U12U13U23
N10.0462 (19)0.0427 (14)0.0387 (13)0.0063 (13)−0.0049 (12)0.0047 (12)
O10.0589 (16)0.0474 (12)0.0419 (11)0.0167 (12)−0.0083 (11)−0.0002 (9)
O20.0703 (18)0.0798 (15)0.0374 (11)0.0180 (14)−0.0085 (11)−0.0050 (11)
O30.0670 (19)0.0583 (14)0.0752 (16)0.0223 (14)−0.0005 (14)0.0021 (12)
C10.055 (2)0.0477 (19)0.0452 (18)0.0095 (17)0.0034 (16)0.0005 (15)
C20.049 (2)0.0423 (18)0.0547 (19)0.0086 (16)0.0037 (16)0.0033 (13)
C30.048 (2)0.0414 (16)0.0321 (14)−0.0018 (17)−0.0055 (14)0.0026 (14)
C40.040 (2)0.0387 (16)0.0355 (15)0.0004 (16)−0.0056 (14)0.0095 (13)
C50.050 (2)0.0496 (19)0.0362 (16)0.0034 (17)−0.0045 (15)0.0030 (14)
C60.065 (3)0.072 (2)0.0387 (17)0.001 (2)−0.0138 (17)0.0172 (17)
C70.052 (2)0.061 (2)0.064 (2)0.010 (2)−0.0105 (19)0.0201 (18)
C80.053 (2)0.0422 (18)0.0547 (19)0.0016 (18)−0.0003 (18)0.0074 (16)
C90.048 (2)0.0396 (16)0.0382 (16)0.0009 (16)−0.0062 (15)0.0078 (13)
C100.083 (3)0.068 (2)0.074 (3)0.017 (2)0.018 (2)−0.0021 (19)
N1—C31.278 (3)C3—H30.9300
N1—O11.405 (3)C4—C91.390 (4)
O1—C11.432 (3)C4—C51.391 (4)
O2—C51.368 (3)C5—C61.382 (4)
O2—H20.8200C6—C71.381 (4)
O3—C81.372 (3)C6—H60.9300
O3—C101.425 (3)C7—C81.392 (4)
C1—C21.501 (3)C7—H70.9300
C1—H1A0.9700C8—C91.374 (4)
C1—H1B0.9700C9—H90.9300
C2—C2i1.524 (5)C10—H10A0.9600
C2—H2A0.9700C10—H10B0.9600
C2—H2B0.9700C10—H10C0.9600
C3—C41.451 (4)
C3—N1—O1111.2 (2)O2—C5—C6117.6 (3)
N1—O1—C1109.33 (19)O2—C5—C4122.5 (3)
C5—O2—H2109.5C6—C5—C4119.9 (3)
C8—O3—C10116.9 (2)C7—C6—C5119.9 (3)
O1—C1—C2107.0 (2)C7—C6—H6120.0
O1—C1—H1A110.3C5—C6—H6120.0
C2—C1—H1A110.3C6—C7—C8120.8 (3)
O1—C1—H1B110.3C6—C7—H7119.6
C2—C1—H1B110.3C8—C7—H7119.6
H1A—C1—H1B108.6O3—C8—C9125.3 (3)
C1—C2—C2i113.7 (3)O3—C8—C7115.7 (3)
C1—C2—H2A108.8C9—C8—C7118.9 (3)
C2i—C2—H2A108.8C8—C9—C4121.1 (3)
C1—C2—H2B108.8C8—C9—H9119.5
C2i—C2—H2B108.8C4—C9—H9119.5
H2A—C2—H2B107.7O3—C10—H10A109.5
N1—C3—C4121.8 (3)O3—C10—H10B109.5
N1—C3—H3119.1H10A—C10—H10B109.5
C4—C3—H3119.1O3—C10—H10C109.5
C9—C4—C5119.4 (3)H10A—C10—H10C109.5
C9—C4—C3118.3 (2)H10B—C10—H10C109.5
C5—C4—C3122.3 (3)
C3—N1—O1—C1−179.4 (2)C4—C5—C6—C71.5 (5)
N1—O1—C1—C2178.8 (2)C5—C6—C7—C8−1.6 (5)
O1—C1—C2—C2i−64.3 (4)C10—O3—C8—C93.4 (5)
O1—N1—C3—C4179.2 (2)C10—O3—C8—C7−175.7 (3)
N1—C3—C4—C9−178.2 (3)C6—C7—C8—O3−179.8 (3)
N1—C3—C4—C50.7 (5)C6—C7—C8—C91.0 (5)
C9—C4—C5—O2179.6 (3)O3—C8—C9—C4−179.5 (3)
C3—C4—C5—O20.7 (5)C7—C8—C9—C4−0.3 (5)
C9—C4—C5—C6−0.8 (4)C5—C4—C9—C80.3 (4)
C3—C4—C5—C6−179.7 (3)C3—C4—C9—C8179.2 (3)
O2—C5—C6—C7−178.9 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.932.643 (2)145
C3—H3···O2ii0.932.653.481 (3)150
C9—H9···O2ii0.932.513.382 (3)157
C10—H10A···O3iii0.962.743.448 (4)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.932.643 (2)145
C3—H3⋯O2i0.932.653.481 (3)150
C9—H9⋯O2i0.932.513.382 (3)157
C10—H10A⋯O3ii0.962.743.448 (4)131

Symmetry codes: (i) ; (ii) .

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