Literature DB >> 21588972

9-(4-Chloro-phen-oxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Damian Trzybiński1, Karol Krzymiński, Jerzy Błażejowski.   

Abstract

In the crystal of the title compound, C(21)H(15)ClNO(2) (+)·CF(3)SO(3) (-), adjacent cations are linked through C-H⋯π and π-π inter-actions [centroid-centroid distance = 3.987 (2) Å], and neighboring cations and anions via C-H⋯O and C-F⋯π inter-actions. The acridine ring system and benzene ring are oriented at a dihedral angle of 1.0 (1)° while the carboxyl group is twisted at an angle of 85.0 (1)° relative to the acridine skeleton. The mean planes of adjacent acridine units are either parallel or inclined at an angle of 78.2 (1)° in the crystal structure.

Entities:  

Year:  2010        PMID: 21588972      PMCID: PMC3009014          DOI: 10.1107/S1600536810039541

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemiluminogenic properties of 9-phen­oxy­carbonyl-10-methyl­acridinium trifluoro­methane­sulfonates, see: Brown et al. (2009 ▶); King et al. (2007 ▶); Rak et al. (1999 ▶); Roda et al. (2003 ▶); Zomer & Jacquemijns (2001 ▶). For related structures, see: Sikorski et al. (2005 ▶); Trzybiński et al. (2010 ▶). For inter­molecular inter­actions, see: Dorn et al. (2005 ▶); Hunter et al. (2001 ▶); Novoa et al. (2006 ▶); Takahashi et al. (2001 ▶). For the synthesis, see: Sato (1996 ▶); Trzybiński et al. (2010 ▶).

Experimental

Crystal data

C21H15ClNO2CF3SO3 M = 497.87 Monoclinic, a = 13.3025 (11) Å b = 8.6750 (9) Å c = 19.6191 (18) Å β = 106.577 (10)° V = 2169.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 295 K 0.35 × 0.28 × 0.06 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer 11162 measured reflections 3777 independent reflections 2679 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.112 S = 1.08 3777 reflections 299 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039541/xu5039sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039541/xu5039Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15ClNO2+·CF3SO3F(000) = 1016
Mr = 497.87Dx = 1.524 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1665 reflections
a = 13.3025 (11) Åθ = 3.0–29.1°
b = 8.6750 (9) ŵ = 0.33 mm1
c = 19.6191 (18) ÅT = 295 K
β = 106.577 (10)°Plate, yellow
V = 2169.9 (4) Å30.35 × 0.28 × 0.06 mm
Z = 4
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer2679 reflections with I > 2σ(I)
Radiation source: Enhanced (Mo) X-ray SourceRint = 0.031
graphiteθmax = 25.1°, θmin = 3.2°
Detector resolution: 10.4002 pixels mm-1h = −15→15
ω scansk = −10→8
11162 measured reflectionsl = −23→23
3777 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0386P)2 + 1.4339P] where P = (Fo2 + 2Fc2)/3
3777 reflections(Δ/σ)max < 0.001
299 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.6412 (3)0.7757 (4)0.51159 (16)0.0551 (8)
H10.59680.82800.53270.066*
C20.7459 (3)0.7893 (4)0.53941 (18)0.0655 (9)
H20.77360.85030.57940.079*
C30.8127 (3)0.7105 (4)0.50748 (19)0.0642 (9)
H30.88480.71930.52740.077*
C40.7761 (2)0.6220 (4)0.44874 (17)0.0545 (8)
H40.82260.57310.42840.065*
C50.4792 (3)0.3888 (4)0.27537 (17)0.0610 (9)
H50.52410.33550.25510.073*
C60.3742 (3)0.3699 (5)0.2497 (2)0.0827 (12)
H60.34800.30340.21160.099*
C70.3035 (3)0.4472 (5)0.2787 (2)0.0811 (12)
H70.23160.43270.25970.097*
C80.3403 (2)0.5423 (4)0.33414 (19)0.0610 (9)
H80.29330.59270.35360.073*
C90.4901 (2)0.6658 (3)0.42070 (14)0.0407 (7)
N100.62580 (17)0.5155 (3)0.35967 (12)0.0408 (5)
C110.5976 (2)0.6831 (3)0.45086 (14)0.0408 (7)
C120.6666 (2)0.6045 (3)0.41855 (15)0.0416 (7)
C130.4494 (2)0.5676 (3)0.36378 (15)0.0426 (7)
C140.5202 (2)0.4893 (3)0.33286 (14)0.0421 (7)
C150.4160 (2)0.7658 (3)0.44662 (15)0.0451 (7)
O160.39162 (15)0.7040 (2)0.50208 (10)0.0497 (5)
O170.3831 (2)0.8846 (3)0.41934 (13)0.0785 (8)
C180.3180 (2)0.7867 (3)0.52827 (14)0.0410 (7)
C190.2135 (2)0.7596 (4)0.49788 (15)0.0503 (8)
H190.19100.69280.45940.060*
C200.1421 (2)0.8339 (4)0.52579 (16)0.0566 (8)
H200.07060.81760.50630.068*
C210.1776 (3)0.9314 (4)0.58220 (15)0.0535 (8)
C220.2823 (3)0.9565 (4)0.61275 (15)0.0558 (8)
H220.30491.02200.65160.067*
C230.3544 (2)0.8829 (3)0.58496 (15)0.0484 (7)
H230.42590.89870.60450.058*
Cl240.08737 (9)1.02661 (14)0.61618 (5)0.0951 (4)
C250.6984 (2)0.4487 (4)0.32249 (17)0.0568 (8)
H25A0.65900.41260.27630.085*
H25B0.73600.36410.34970.085*
H25C0.74730.52620.31730.085*
S260.99146 (6)0.51449 (9)0.33370 (4)0.0456 (2)
O270.91136 (17)0.6102 (2)0.28913 (11)0.0578 (6)
O280.96649 (17)0.4501 (3)0.39381 (11)0.0709 (7)
O291.09667 (17)0.5708 (3)0.34719 (12)0.0704 (7)
C300.9908 (3)0.3493 (4)0.27794 (18)0.0641 (9)
F310.89748 (18)0.2801 (2)0.25860 (13)0.0971 (7)
F321.01300 (19)0.3885 (3)0.21805 (11)0.0974 (8)
F331.06074 (19)0.2433 (3)0.30961 (12)0.0989 (8)
U11U22U33U12U13U23
C10.056 (2)0.0547 (19)0.0543 (19)0.0055 (16)0.0160 (16)0.0022 (16)
C20.064 (2)0.065 (2)0.059 (2)−0.0006 (19)0.0042 (18)−0.0015 (17)
C30.0434 (19)0.072 (2)0.071 (2)0.0002 (18)0.0048 (17)0.0125 (19)
C40.0419 (19)0.0549 (19)0.069 (2)0.0081 (15)0.0189 (16)0.0107 (17)
C50.057 (2)0.058 (2)0.076 (2)−0.0016 (17)0.0320 (18)−0.0180 (18)
C60.063 (3)0.088 (3)0.098 (3)−0.015 (2)0.024 (2)−0.044 (2)
C70.043 (2)0.094 (3)0.108 (3)−0.013 (2)0.024 (2)−0.034 (2)
C80.0386 (18)0.065 (2)0.086 (2)0.0017 (16)0.0285 (17)−0.0115 (19)
C90.0458 (18)0.0348 (15)0.0479 (16)0.0071 (13)0.0235 (14)0.0073 (13)
N100.0377 (13)0.0403 (13)0.0514 (13)0.0090 (11)0.0240 (11)0.0084 (11)
C110.0454 (18)0.0338 (15)0.0455 (16)0.0060 (13)0.0167 (14)0.0081 (12)
C120.0377 (17)0.0388 (16)0.0512 (17)0.0065 (13)0.0172 (13)0.0121 (14)
C130.0396 (17)0.0387 (15)0.0554 (17)0.0060 (13)0.0227 (14)0.0039 (13)
C140.0396 (17)0.0370 (15)0.0560 (17)0.0045 (13)0.0237 (14)0.0027 (13)
C150.0490 (18)0.0407 (17)0.0517 (17)0.0095 (14)0.0239 (15)0.0049 (14)
O160.0550 (13)0.0479 (12)0.0560 (12)0.0168 (10)0.0316 (10)0.0107 (9)
O170.110 (2)0.0622 (15)0.0876 (17)0.0457 (15)0.0674 (15)0.0311 (13)
C180.0443 (18)0.0428 (16)0.0401 (15)0.0089 (13)0.0188 (14)0.0044 (13)
C190.053 (2)0.0585 (19)0.0414 (16)−0.0012 (15)0.0157 (15)−0.0035 (14)
C200.0387 (18)0.081 (2)0.0514 (18)0.0058 (16)0.0144 (15)0.0060 (17)
C210.057 (2)0.068 (2)0.0418 (16)0.0242 (17)0.0241 (15)0.0113 (15)
C220.068 (2)0.057 (2)0.0411 (16)0.0115 (17)0.0140 (16)−0.0056 (14)
C230.0401 (17)0.0562 (19)0.0464 (16)0.0050 (15)0.0081 (14)0.0026 (15)
Cl240.0976 (8)0.1281 (9)0.0771 (6)0.0595 (7)0.0531 (6)0.0170 (6)
C250.0459 (19)0.069 (2)0.066 (2)0.0127 (16)0.0333 (16)0.0015 (16)
S260.0369 (4)0.0554 (5)0.0466 (4)−0.0024 (4)0.0151 (3)−0.0039 (4)
O270.0521 (13)0.0545 (13)0.0673 (14)0.0069 (11)0.0176 (11)0.0104 (11)
O280.0590 (15)0.1053 (19)0.0566 (13)0.0177 (13)0.0296 (11)0.0210 (13)
O290.0442 (13)0.0904 (17)0.0758 (15)−0.0218 (12)0.0157 (11)−0.0182 (13)
C300.053 (2)0.069 (2)0.063 (2)0.0070 (19)0.0048 (17)−0.0033 (18)
F310.0796 (16)0.0704 (14)0.1195 (18)−0.0186 (12)−0.0069 (14)−0.0203 (13)
F320.1092 (19)0.130 (2)0.0568 (12)0.0208 (15)0.0297 (12)−0.0186 (13)
F330.0931 (17)0.0805 (15)0.1065 (17)0.0384 (13)0.0016 (14)−0.0116 (13)
C1—C21.349 (4)C13—C141.428 (4)
C1—C111.417 (4)C15—O171.186 (3)
C1—H10.9300C15—O161.334 (3)
C2—C31.402 (5)O16—C181.423 (3)
C2—H20.9300C18—C231.364 (4)
C3—C41.354 (5)C18—C191.367 (4)
C3—H30.9300C19—C201.384 (4)
C4—C121.415 (4)C19—H190.9300
C4—H40.9300C20—C211.366 (4)
C5—C61.353 (5)C20—H200.9300
C5—C141.407 (4)C21—C221.368 (4)
C5—H50.9300C21—Cl241.739 (3)
C6—C71.401 (5)C22—C231.386 (4)
C6—H60.9300C22—H220.9300
C7—C81.341 (5)C23—H230.9300
C7—H70.9300C25—H25A0.9600
C8—C131.418 (4)C25—H25B0.9600
C8—H80.9300C25—H25C0.9600
C9—C131.386 (4)S26—O281.427 (2)
C9—C111.391 (4)S26—O291.434 (2)
C9—C151.506 (4)S26—O271.434 (2)
N10—C121.367 (4)S26—C301.801 (4)
N10—C141.372 (3)C30—F331.330 (4)
N10—C251.485 (3)C30—F311.333 (4)
C11—C121.429 (4)C30—F321.335 (4)
C2—C1—C11121.2 (3)C5—C14—C13118.9 (3)
C2—C1—H1119.4O17—C15—O16125.0 (3)
C11—C1—H1119.4O17—C15—C9122.7 (3)
C1—C2—C3119.3 (3)O16—C15—C9112.2 (2)
C1—C2—H2120.4C15—O16—C18116.4 (2)
C3—C2—H2120.4C23—C18—C19122.7 (3)
C4—C3—C2122.5 (3)C23—C18—O16118.8 (3)
C4—C3—H3118.8C19—C18—O16118.3 (2)
C2—C3—H3118.8C18—C19—C20118.3 (3)
C3—C4—C12119.6 (3)C18—C19—H19120.8
C3—C4—H4120.2C20—C19—H19120.8
C12—C4—H4120.2C21—C20—C19119.5 (3)
C6—C5—C14119.7 (3)C21—C20—H20120.3
C6—C5—H5120.1C19—C20—H20120.3
C14—C5—H5120.1C20—C21—C22121.8 (3)
C5—C6—C7122.2 (3)C20—C21—Cl24119.2 (3)
C5—C6—H6118.9C22—C21—Cl24119.0 (2)
C7—C6—H6118.9C21—C22—C23119.1 (3)
C8—C7—C6119.4 (3)C21—C22—H22120.4
C8—C7—H7120.3C23—C22—H22120.4
C6—C7—H7120.3C18—C23—C22118.6 (3)
C7—C8—C13121.5 (3)C18—C23—H23120.7
C7—C8—H8119.3C22—C23—H23120.7
C13—C8—H8119.3N10—C25—H25A109.5
C13—C9—C11121.7 (2)N10—C25—H25B109.5
C13—C9—C15118.9 (3)H25A—C25—H25B109.5
C11—C9—C15119.1 (3)N10—C25—H25C109.5
C12—N10—C14122.3 (2)H25A—C25—H25C109.5
C12—N10—C25118.6 (2)H25B—C25—H25C109.5
C14—N10—C25119.1 (2)O28—S26—O29115.20 (14)
C9—C11—C1122.9 (3)O28—S26—O27115.00 (13)
C9—C11—C12118.2 (3)O29—S26—O27115.57 (14)
C1—C11—C12118.9 (3)O28—S26—C30103.23 (17)
N10—C12—C4121.8 (3)O29—S26—C30102.62 (16)
N10—C12—C11119.6 (3)O27—S26—C30102.48 (14)
C4—C12—C11118.6 (3)F33—C30—F31107.0 (3)
C9—C13—C8122.9 (3)F33—C30—F32106.6 (3)
C9—C13—C14118.8 (3)F31—C30—F32106.6 (3)
C8—C13—C14118.3 (3)F33—C30—S26112.6 (2)
N10—C14—C5122.0 (2)F31—C30—S26112.0 (2)
N10—C14—C13119.1 (2)F32—C30—S26111.6 (3)
C11—C1—C2—C30.1 (5)C6—C5—C14—C131.1 (5)
C1—C2—C3—C40.9 (5)C9—C13—C14—N10−1.0 (4)
C2—C3—C4—C12−1.3 (5)C8—C13—C14—N10178.3 (3)
C14—C5—C6—C7−0.3 (6)C9—C13—C14—C5179.6 (3)
C5—C6—C7—C8−0.6 (7)C8—C13—C14—C5−1.1 (4)
C6—C7—C8—C130.6 (6)C13—C9—C15—O17−82.2 (4)
C13—C9—C11—C1−176.2 (3)C11—C9—C15—O1792.9 (4)
C15—C9—C11—C18.8 (4)C13—C9—C15—O1696.9 (3)
C13—C9—C11—C124.3 (4)C11—C9—C15—O16−88.0 (3)
C15—C9—C11—C12−170.7 (2)O17—C15—O16—C181.9 (4)
C2—C1—C11—C9179.9 (3)C9—C15—O16—C18−177.1 (2)
C2—C1—C11—C12−0.6 (4)C15—O16—C18—C23−96.8 (3)
C14—N10—C12—C4175.5 (2)C15—O16—C18—C1986.8 (3)
C25—N10—C12—C4−6.3 (4)C23—C18—C19—C200.4 (4)
C14—N10—C12—C11−4.7 (4)O16—C18—C19—C20176.7 (3)
C25—N10—C12—C11173.5 (2)C18—C19—C20—C210.1 (5)
C3—C4—C12—N10−179.4 (3)C19—C20—C21—C22−0.9 (5)
C3—C4—C12—C110.8 (4)C19—C20—C21—Cl24179.1 (2)
C9—C11—C12—N10−0.1 (4)C20—C21—C22—C231.1 (5)
C1—C11—C12—N10−179.6 (2)Cl24—C21—C22—C23−178.9 (2)
C9—C11—C12—C4179.7 (2)C19—C18—C23—C22−0.2 (4)
C1—C11—C12—C40.2 (4)O16—C18—C23—C22−176.4 (2)
C11—C9—C13—C8177.0 (3)C21—C22—C23—C18−0.6 (4)
C15—C9—C13—C8−8.0 (4)O28—S26—C30—F33−60.1 (3)
C11—C9—C13—C14−3.8 (4)O29—S26—C30—F3360.0 (3)
C15—C9—C13—C14171.2 (2)O27—S26—C30—F33−179.9 (3)
C7—C8—C13—C9179.5 (3)O28—S26—C30—F3160.5 (3)
C7—C8—C13—C140.3 (5)O29—S26—C30—F31−179.4 (2)
C12—N10—C14—C5−175.4 (3)O27—S26—C30—F31−59.2 (3)
C25—N10—C14—C56.4 (4)O28—S26—C30—F32180.0 (2)
C12—N10—C14—C135.2 (4)O29—S26—C30—F32−60.0 (3)
C25—N10—C14—C13−173.0 (2)O27—S26—C30—F3260.2 (3)
C6—C5—C14—N10−178.3 (3)
Cg4 is the centroid of the C18–C23 ring.
D—H···AD—HH···AD···AD—H···A
C3—H3···O28i0.932.593.328 (5)136
C4—H4···O280.932.453.370 (4)171
C5—H5···O27ii0.932.393.258 (4)154
C6—H6···O29ii0.932.543.304 (5)140
C8—H8···O29iii0.932.593.332 (4)137
C19—H19···O29iii0.932.443.349 (4)165
C25—H25C···O270.962.513.387 (4)152
C25—H25B···Cg4iv0.962.653.519 (4)151
XIJI···JX···JXI···J
C30F31Cg1ii3.570 (3)3.916 (4)94.4 (2)
C30F32Cg1ii3.337 (3)3.916 (4)105.8 (2)
C30F33Cg3ii3.387 (3)4.073 (4)111.9 (2)
IJCgI···CgJDihedral angleCgI_PerpCgI_Offset
24v3.987 (2)2.96 (15)3.477 (2)1.951 (2)
Table 1

Hydrogen-bond geometry (Å, °)

Cg4 is the centroid of the C18–C23 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O28i0.932.593.328 (5)136
C4—H4⋯O280.932.453.370 (4)171
C5—H5⋯O27ii0.932.393.258 (4)154
C6—H6⋯O29ii0.932.543.304 (5)140
C8—H8⋯O29iii0.932.593.332 (4)137
C19—H19⋯O29iii0.932.443.349 (4)165
C25—H25C⋯O270.962.513.387 (4)152
C25—H25BCg4iv0.962.653.519 (4)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

C–F⋯π inter­actions (Å,°)

Cg1 and Cg3 are the centroids of the C9/N10/C11–C14 and C5–C8/C13/C14 rings, respectively.

XIJIJXJXIJ
C30F31Cg1ii3.570 (3)3.916 (4)94.4 (2)
C30F32Cg1ii3.337 (3)3.916 (4)105.8 (2)
C30F33Cg3ii3.387 (3)4.073 (4)111.9 (2)

Symmetry code: (ii) .

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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  9-(2,6-dichlorophenoxycarbonyl)-10-methylacridinium trifluoromethanesulfonate and its precursor 2,6-dichlorophenyl acridine-9-carboxylate.

Authors:  Artur Sikorski; Karol Krzymiński; Antoni Konitz; Jerzy Błazejowski
Journal:  Acta Crystallogr C       Date:  2005-03-11       Impact factor: 1.172

4.  Toward an Understanding of the Chemiluminescence Accompanying the Reaction of 9-Carboxy-10-methylacridinium Phenyl Ester with Hydrogen Peroxide.

Authors:  Janusz Rak; Piotr Skurski; Jerzy Blazejowski
Journal:  J Org Chem       Date:  1999-04-30       Impact factor: 4.354

5.  Flow injection analysis of H2O2 in natural waters using acridinium ester chemiluminescence: method development and optimization using a kinetic model.

Authors:  D Whitney King; William J Cooper; Steven A Rusak; Barrie M Peake; James J Kiddle; Daniel W O'Sullivan; Megan L Melamed; Chris R Morgan; Stephen M Theberge
Journal:  Anal Chem       Date:  2007-04-25       Impact factor: 6.986

6.  Development and application of a novel acridinium ester for use as a chemiluminescent emitter in nucleic acid hybridisation assays using chemiluminescence quenching.

Authors:  Richard C Brown; Zhaoqiang Li; Andrew J Rutter; Xiaojing Mu; Owen H Weeks; Keith Smith; Ian Weeks
Journal:  Org Biomol Chem       Date:  2008-11-24       Impact factor: 3.876

7.  9-(4-Bromo-phenoxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Authors:  Damian Trzybiński; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-12

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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