Literature DB >> 21588970

Redetermination of 3-methyl-isoquinoline at 150 K.

Andrew D Bond1.   

Abstract

The structure of the title compound, C(19)H(9)O, has been redetermined at 150 K. The redetermination is of significantly higher precision than a previous room-temperature structure [Ribar et al. (1974 ▶). Cryst. Struct. Commun.3, 323-325]. The C-N bond lengths for this redetermination are much closer to those observed in comparable structures, and the orientation of the methyl group with respect to the isoquinoline plane is clarified. Inter-molecular weak C-H⋯N contacts are present in the crystal.

Entities:  

Year:  2010        PMID: 21588970      PMCID: PMC3009354          DOI: 10.1107/S1600536810039838

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure at room temperature, see: Ribar et al. (1974 ▶). For the structure of the parent compound isoquinoline, see: Hensen et al. (1999 ▶). The C—N bond length in the structure of Ribar et al. (1974 ▶) clearly lies outside of the main distribution for 19 relevant structural fragments in the Cambridge Structural Database, being the second shortest bond in the sample [one shorter bond exists for refcode SAKCIQ, but this structure has R1 = 14.2% (Trumpp-Kallmeyer et al., 1998 ▶)]. The corresponding C—N bond length in this redetermination lies exactly at the mean of the CSD sample.

Experimental

Crystal data

C10H9N M = 143.18 Monoclinic, a = 6.1991 (4) Å b = 7.4176 (6) Å c = 16.5421 (12) Å β = 93.438 (2)° V = 759.28 (10) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 150 K 0.25 × 0.15 × 0.12 mm

Data collection

Bruker–Nonius X8 APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.826, T max = 0.991 9801 measured reflections 1844 independent reflections 1171 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.119 S = 1.06 1844 reflections 101 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039838/hb5670sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039838/hb5670Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NF(000) = 304
Mr = 143.18Dx = 1.253 Mg m3
Monoclinic, P21/cMelting point = 336–338 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 6.1991 (4) ÅCell parameters from 1780 reflections
b = 7.4176 (6) Åθ = 2.5–25.4°
c = 16.5421 (12) ŵ = 0.07 mm1
β = 93.438 (2)°T = 150 K
V = 759.28 (10) Å3Block, colourless
Z = 40.25 × 0.15 × 0.12 mm
Bruker–Nonius X8 APEXII CCD diffractometer1844 independent reflections
Radiation source: fine-focus sealed tube1171 reflections with I > 2σ(I)
graphiteRint = 0.034
thin–slice ω and φ scansθmax = 28.4°, θmin = 3.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −7→8
Tmin = 0.826, Tmax = 0.991k = −9→9
9801 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0637P)2] where P = (Fo2 + 2Fc2)/3
1844 reflections(Δ/σ)max < 0.001
101 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.11212 (16)0.91552 (15)0.31390 (6)0.0232 (3)
H1A−0.01450.97420.33010.028*
N20.26422 (14)0.87917 (12)0.37033 (5)0.0247 (3)
C30.44782 (16)0.79419 (15)0.34720 (7)0.0234 (3)
C40.47647 (16)0.75059 (15)0.26814 (7)0.0232 (3)
H4A0.60700.69440.25440.028*
C50.32884 (18)0.74255 (15)0.12395 (7)0.0257 (3)
H5A0.45640.68730.10660.031*
C60.16084 (19)0.77766 (16)0.06908 (7)0.0294 (3)
H6A0.17090.74340.01410.035*
C7−0.02738 (18)0.86413 (16)0.09309 (7)0.0289 (3)
H7A−0.14200.88940.05400.035*
C8−0.04638 (16)0.91186 (15)0.17202 (7)0.0247 (3)
H8A−0.17340.97080.18770.030*
C90.12341 (16)0.87349 (14)0.23056 (6)0.0205 (3)
C100.31404 (16)0.78813 (14)0.20670 (7)0.0209 (3)
C110.61079 (18)0.74985 (17)0.41473 (7)0.0317 (3)
H11A0.64950.85980.44510.048*
H11B0.74030.69910.39230.048*
H11C0.54930.66170.45100.048*
U11U22U33U12U13U23
C10.0222 (6)0.0219 (7)0.0259 (6)0.0014 (5)0.0044 (5)0.0006 (5)
N20.0262 (5)0.0249 (6)0.0232 (5)0.0014 (4)0.0022 (4)0.0010 (4)
C30.0235 (6)0.0196 (7)0.0271 (7)−0.0011 (4)0.0003 (5)0.0040 (5)
C40.0198 (5)0.0212 (6)0.0289 (7)0.0011 (4)0.0050 (5)0.0025 (5)
C50.0300 (6)0.0221 (6)0.0258 (7)0.0000 (5)0.0089 (5)−0.0002 (5)
C60.0402 (7)0.0277 (7)0.0206 (6)−0.0059 (5)0.0043 (5)0.0007 (5)
C70.0287 (6)0.0299 (7)0.0274 (7)−0.0049 (5)−0.0050 (5)0.0048 (5)
C80.0216 (6)0.0233 (7)0.0290 (7)−0.0006 (4)0.0001 (5)0.0028 (5)
C90.0211 (5)0.0172 (6)0.0233 (6)−0.0019 (4)0.0028 (4)0.0021 (5)
C100.0223 (6)0.0173 (6)0.0235 (6)−0.0028 (4)0.0042 (4)0.0016 (5)
C110.0303 (6)0.0335 (8)0.0307 (7)0.0015 (5)−0.0040 (5)0.0053 (6)
C1—N21.3144 (13)C6—C71.4093 (16)
C1—C91.4194 (15)C6—H6A0.950
C1—H1A0.950C7—C81.3646 (15)
N2—C31.3753 (13)C7—H7A0.950
C3—C41.3690 (15)C8—C91.4157 (14)
C3—C111.4971 (15)C8—H8A0.950
C4—C101.4148 (15)C9—C101.4174 (15)
C4—H4A0.950C11—H11A0.980
C5—C61.3649 (16)C11—H11B0.980
C5—C101.4184 (16)C11—H11C0.980
C5—H5A0.950
N2—C1—C9124.73 (10)C8—C7—H7A119.7
N2—C1—H1A117.6C6—C7—H7A119.7
C9—C1—H1A117.6C7—C8—C9119.93 (10)
C1—N2—C3117.83 (9)C7—C8—H8A120.0
C4—C3—N2122.08 (10)C9—C8—H8A120.0
C4—C3—C11122.72 (10)C8—C9—C10119.83 (10)
N2—C3—C11115.20 (10)C8—C9—C1122.84 (10)
C3—C4—C10120.81 (10)C10—C9—C1117.33 (10)
C3—C4—H4A119.6C4—C10—C9117.21 (10)
C10—C4—H4A119.6C4—C10—C5124.19 (10)
C6—C5—C10120.36 (10)C9—C10—C5118.59 (10)
C6—C5—H5A119.8C3—C11—H11A109.5
C10—C5—H5A119.8C3—C11—H11B109.5
C5—C6—C7120.73 (11)H11A—C11—H11B109.5
C5—C6—H6A119.6C3—C11—H11C109.5
C7—C6—H6A119.6H11A—C11—H11C109.5
C8—C7—C6120.54 (11)H11B—C11—H11C109.5
C9—C1—N2—C3−0.04 (17)N2—C1—C9—C8178.66 (10)
C1—N2—C3—C41.19 (16)N2—C1—C9—C10−0.81 (17)
C1—N2—C3—C11−177.61 (9)C3—C4—C10—C90.55 (16)
N2—C3—C4—C10−1.46 (17)C3—C4—C10—C5−178.11 (10)
C11—C3—C4—C10177.24 (10)C8—C9—C10—C4−178.97 (9)
C10—C5—C6—C71.80 (17)C1—C9—C10—C40.51 (15)
C5—C6—C7—C8−1.03 (18)C8—C9—C10—C5−0.23 (16)
C6—C7—C8—C9−0.38 (17)C1—C9—C10—C5179.26 (9)
C7—C8—C9—C100.99 (16)C6—C5—C10—C4177.49 (10)
C7—C8—C9—C1−178.46 (10)C6—C5—C10—C9−1.16 (16)
D—H···AD—HH···AD···AD—H···A
C5—H5A···N2i0.952.883.6891 (14)144
C6—H6A···N2ii0.952.643.5813 (15)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5A⋯N2i0.952.883.6891 (14)144
C6—H6A⋯N2ii0.952.643.5813 (15)170

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
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