Literature DB >> 21588953

4-Amino-benzoic acid-4,4'-(propane-1,3-diyl)dipyridine (1/1).

Fwu Ming Shen, Shie Fu Lush.   

Abstract

In the crystal structure of the title compound, C(13)H(14)N(2)·C(7)H(7)NO(2), the 4,4'-trimethyl-ene-dipyridine (TMDP) mol-ecule displays an approximately planar structure, the maximum atomic deviation excluding H atoms being 0.118 (2) Å and the dihedral angle between the pyridine rings 4.59 (10)°. The TMDP and 4-amino-benzoic acid (ABA) mol-ecules are linked by O-H⋯N and N-H⋯N hydrogen bonding, while ABA mol-ecules are linked by O-H⋯O hydrogen bonding. C-H⋯π interactions are also observed between the methyl-ene groups of TMDP mol-ecules and the benzene rings of ABA mol-ecules.

Entities:  

Year:  2010        PMID: 21588953      PMCID: PMC3009261          DOI: 10.1107/S1600536810039528

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 4-amino­benzoic acid as a ligand, see: Smith et al. (2005 ▶). For related structures, see: Lynch & McClenaghan (2001 ▶); Smith et al. (1997 ▶, 2000 ▶).

Experimental

Crystal data

C13H14N2·C7H7NO2 M = 335.40 Monoclinic, a = 7.6417 (6) Å b = 11.1708 (9) Å c = 20.8775 (18) Å β = 99.436 (2)° V = 1758.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 297 K 0.60 × 0.20 × 0.17 mm

Data collection

Bruker SMART 1000 CCD diffractometer 9816 measured reflections 3470 independent reflections 2055 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.131 S = 1.02 3470 reflections 238 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810039528/xu5045sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039528/xu5045Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2·C7H7NO2F(000) = 712
Mr = 335.40Dx = 1.267 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2559 reflections
a = 7.6417 (6) Åθ = 2.7–25.5°
b = 11.1708 (9) ŵ = 0.08 mm1
c = 20.8775 (18) ÅT = 297 K
β = 99.436 (2)°Block, colorless
V = 1758.1 (2) Å30.60 × 0.20 × 0.17 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2055 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
graphiteθmax = 26.0°, θmin = 2.0°
φ and ω scansh = −9→9
9816 measured reflectionsk = −12→13
3470 independent reflectionsl = −21→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0618P)2 + 0.1063P] where P = (Fo2 + 2Fc2)/3
3470 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.14 e Å3
3 restraintsΔρmin = −0.18 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2978 (2)0.32540 (12)0.38052 (6)0.0690 (4)
O20.3140 (2)0.13738 (12)0.41752 (7)0.0628 (4)
N1−0.0339 (3)0.04320 (17)0.12447 (8)0.0627 (5)
C10.1876 (2)0.24074 (15)0.25210 (9)0.0464 (5)
H10.22850.31920.25640.056*
C20.1117 (2)0.19990 (15)0.19194 (9)0.0470 (5)
H20.10270.25070.15630.056*
C30.0479 (2)0.08273 (15)0.18373 (8)0.0449 (4)
C40.0743 (2)0.00735 (15)0.23811 (9)0.0490 (5)
H40.0405−0.07260.23340.059*
C50.1492 (2)0.04932 (15)0.29817 (8)0.0450 (4)
H50.1630−0.00210.33370.054*
C60.2049 (2)0.16768 (15)0.30680 (8)0.0422 (4)
C70.2759 (3)0.21774 (17)0.37126 (9)0.0497 (5)
N20.4334 (2)0.23425 (14)0.53122 (8)0.0576 (4)
N30.8995 (3)0.22955 (18)1.01679 (8)0.0715 (5)
C80.4148 (3)0.35141 (18)0.53916 (10)0.0701 (6)
H80.36450.39660.50340.084*
C90.4660 (3)0.40938 (18)0.59730 (9)0.0643 (6)
H90.45180.49180.59990.077*
C100.5383 (2)0.34557 (15)0.65190 (8)0.0433 (4)
C110.5601 (3)0.22429 (16)0.64341 (9)0.0556 (5)
H110.61050.17710.67830.067*
C120.5072 (3)0.17298 (18)0.58325 (9)0.0599 (6)
H120.52410.09110.57890.072*
C130.5864 (2)0.40875 (15)0.71617 (8)0.0480 (5)
H13A0.47960.44540.72680.058*
H13B0.66800.47300.71070.058*
C140.6693 (2)0.33409 (16)0.77385 (8)0.0467 (5)
H14A0.78190.30240.76590.056*
H14B0.59220.26700.77910.056*
C150.6987 (3)0.40804 (16)0.83572 (8)0.0506 (5)
H15A0.77880.47300.82990.061*
H15B0.58620.44360.84100.061*
C160.7721 (2)0.34403 (17)0.89766 (9)0.0482 (5)
C170.7995 (3)0.22242 (19)0.90228 (10)0.0707 (6)
H170.77630.17500.86530.085*
C180.8616 (3)0.1705 (2)0.96176 (11)0.0794 (7)
H180.87760.08790.96300.095*
C190.8731 (3)0.3476 (2)1.01235 (10)0.0758 (7)
H190.89810.39261.05020.091*
C200.8115 (3)0.4068 (2)0.95554 (10)0.0671 (6)
H200.79610.48940.95590.080*
H1A−0.062 (3)0.0975 (14)0.0954 (8)0.081 (8)*
H1B−0.094 (2)−0.0219 (10)0.1227 (10)0.078 (8)*
H2A0.350 (3)0.167 (2)0.4531 (6)0.103 (9)*
U11U22U33U12U13U23
O10.0985 (12)0.0443 (8)0.0564 (9)−0.0035 (8)−0.0104 (8)−0.0094 (7)
O20.0919 (11)0.0506 (8)0.0408 (8)0.0001 (7)−0.0047 (7)−0.0014 (7)
N10.0825 (14)0.0561 (11)0.0444 (10)−0.0045 (11)−0.0043 (9)−0.0057 (10)
C10.0511 (11)0.0361 (9)0.0506 (11)−0.0010 (8)0.0043 (9)−0.0006 (8)
C20.0559 (12)0.0445 (10)0.0398 (10)0.0029 (9)0.0052 (9)0.0050 (8)
C30.0484 (11)0.0443 (10)0.0411 (10)0.0031 (8)0.0046 (8)−0.0053 (8)
C40.0589 (12)0.0366 (9)0.0509 (11)−0.0040 (9)0.0068 (9)−0.0032 (8)
C50.0511 (11)0.0414 (10)0.0418 (10)0.0007 (8)0.0052 (8)0.0043 (8)
C60.0434 (10)0.0399 (9)0.0414 (10)0.0032 (8)0.0016 (8)−0.0026 (8)
C70.0536 (12)0.0464 (11)0.0469 (11)0.0037 (9)0.0012 (9)−0.0016 (9)
N20.0750 (12)0.0542 (10)0.0403 (9)−0.0031 (9)−0.0007 (8)−0.0030 (8)
N30.0816 (13)0.0886 (14)0.0413 (10)0.0064 (11)0.0011 (9)0.0041 (10)
C80.1005 (18)0.0587 (13)0.0430 (12)0.0066 (12)−0.0118 (11)0.0034 (10)
C90.0930 (17)0.0475 (11)0.0469 (12)0.0052 (11)−0.0046 (11)0.0028 (10)
C100.0459 (11)0.0444 (10)0.0388 (10)−0.0034 (8)0.0047 (8)−0.0008 (8)
C110.0769 (14)0.0484 (11)0.0390 (11)0.0047 (10)0.0019 (10)0.0027 (9)
C120.0829 (15)0.0472 (11)0.0473 (12)−0.0006 (11)0.0038 (11)−0.0031 (9)
C130.0558 (12)0.0454 (10)0.0414 (10)−0.0013 (9)0.0042 (9)−0.0026 (9)
C140.0506 (11)0.0498 (10)0.0390 (10)0.0000 (9)0.0050 (8)−0.0014 (8)
C150.0573 (12)0.0524 (11)0.0411 (10)−0.0008 (9)0.0052 (9)−0.0024 (9)
C160.0488 (11)0.0576 (12)0.0380 (10)−0.0023 (9)0.0062 (8)−0.0029 (9)
C170.1055 (18)0.0632 (13)0.0407 (12)0.0134 (13)0.0039 (11)−0.0054 (10)
C180.115 (2)0.0710 (14)0.0498 (14)0.0199 (14)0.0069 (13)0.0050 (12)
C190.0960 (19)0.0853 (17)0.0408 (13)−0.0093 (14)−0.0048 (12)−0.0106 (12)
C200.0840 (16)0.0632 (13)0.0495 (13)−0.0069 (12)−0.0026 (11)−0.0086 (11)
O1—C71.225 (2)C9—H90.9300
O2—C71.316 (2)C10—C111.380 (2)
O2—H2A0.819 (15)C10—C131.507 (2)
N1—C31.365 (2)C11—C121.379 (3)
N1—H1A0.860 (16)C11—H110.9300
N1—H1B0.858 (13)C12—H120.9300
C1—C21.372 (2)C13—C141.515 (2)
C1—C61.392 (2)C13—H13A0.9700
C1—H10.9300C13—H13B0.9700
C2—C31.398 (2)C14—C151.519 (2)
C2—H20.9300C14—H14A0.9700
C3—C41.401 (2)C14—H14B0.9700
C4—C51.373 (2)C15—C161.503 (2)
C4—H40.9300C15—H15A0.9700
C5—C61.392 (2)C15—H15B0.9700
C5—H50.9300C16—C171.376 (3)
C6—C71.476 (2)C16—C201.387 (3)
N2—C121.329 (2)C17—C181.382 (3)
N2—C81.330 (2)C17—H170.9300
N3—C181.316 (3)C18—H180.9300
N3—C191.335 (3)C19—C201.373 (3)
C8—C91.375 (3)C19—H190.9300
C8—H80.9300C20—H200.9300
C9—C101.381 (2)
C7—O2—H2A112.9 (18)C10—C11—H11120.0
C3—N1—H1A115.9 (15)N2—C12—C11123.50 (18)
C3—N1—H1B118.4 (15)N2—C12—H12118.2
H1A—N1—H1B120 (2)C11—C12—H12118.2
C2—C1—C6121.66 (16)C10—C13—C14117.31 (15)
C2—C1—H1119.2C10—C13—H13A108.0
C6—C1—H1119.2C14—C13—H13A108.0
C1—C2—C3120.68 (17)C10—C13—H13B108.0
C1—C2—H2119.7C14—C13—H13B108.0
C3—C2—H2119.7H13A—C13—H13B107.2
N1—C3—C2120.86 (17)C13—C14—C15111.15 (15)
N1—C3—C4121.59 (17)C13—C14—H14A109.4
C2—C3—C4117.54 (16)C15—C14—H14A109.4
C5—C4—C3121.20 (16)C13—C14—H14B109.4
C5—C4—H4119.4C15—C14—H14B109.4
C3—C4—H4119.4H14A—C14—H14B108.0
C4—C5—C6121.04 (16)C16—C15—C14117.08 (16)
C4—C5—H5119.5C16—C15—H15A108.0
C6—C5—H5119.5C14—C15—H15A108.0
C5—C6—C1117.71 (16)C16—C15—H15B108.0
C5—C6—C7122.47 (16)C14—C15—H15B108.0
C1—C6—C7119.81 (16)H15A—C15—H15B107.3
O1—C7—O2123.08 (17)C17—C16—C20115.43 (19)
O1—C7—C6122.41 (17)C17—C16—C15124.14 (17)
O2—C7—C6114.51 (16)C20—C16—C15120.40 (18)
C12—N2—C8116.41 (17)C16—C17—C18120.2 (2)
C18—N3—C19115.21 (19)C16—C17—H17119.9
N2—C8—C9123.57 (19)C18—C17—H17119.9
N2—C8—H8118.2N3—C18—C17124.6 (2)
C9—C8—H8118.2N3—C18—H18117.7
C8—C9—C10120.21 (18)C17—C18—H18117.7
C8—C9—H9119.9N3—C19—C20124.3 (2)
C10—C9—H9119.9N3—C19—H19117.9
C11—C10—C9116.17 (17)C20—C19—H19117.9
C11—C10—C13123.86 (17)C19—C20—C16120.3 (2)
C9—C10—C13119.96 (16)C19—C20—H20119.9
C12—C11—C10120.10 (18)C16—C20—H20119.9
C12—C11—H11120.0
Cg3 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
O2—H2A···N20.82 (2)1.81 (2)2.632 (2)179 (3)
N1—H1A···N3i0.86 (2)2.19 (2)3.045 (3)172 (2)
N1—H1B···O1ii0.86 (1)2.30 (1)3.151 (3)170 (1)
C13—H13A···Cg3iii0.972.873.6606 (17)139
C14—H14A···Cg3iv0.972.883.6902 (17)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯N20.82 (2)1.81 (2)2.632 (2)179 (3)
N1—H1A⋯N3i0.86 (2)2.19 (2)3.045 (3)172 (2)
N1—H1B⋯O1ii0.86 (1)2.30 (1)3.151 (3)170 (1)
C13—H13ACg3iii0.972.873.6606 (17)139
C14—H14ACg3iv0.972.883.6902 (17)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  2-amino-4-(4-pyridyl)pyrimidine and the 1:1 adduct with 4-aminobenzoic acid.

Authors:  D E Lynch; I McClenaghan
Journal:  Acta Crystallogr C       Date:  2001-07-09       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.