Literature DB >> 21588951

2-Amino-4-(4-hy-droxy-3,5-dimeth-oxy-phen-yl)-6-phenyl-nicotinonitrile.

Xiao-Hui Yang1, Yong-Hong Zhou, Li-Hong Hu, Hong-Jun Liu.   

Abstract

In the title compound, C(20)H(17)N(3)O(3), the dihedral angles between the central pyridine ring and the two terminal rings are 15.07 (3) and 43.24 (3)°. The dihedral angle between the two terminal rings is 37.49 (4)° In the crystal, inter-molecular amine N-H⋯N(nitrile) hydrogen-bonding inter-actions form inversion dimers, which are linked into chains through amine N-H⋯O(meth-oxy) hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588951      PMCID: PMC3009024          DOI: 10.1107/S1600536810039127

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on the biological applications of nicotine derivatives, see Hökelek & Necefouglu (1996 ▶, 1999 ▶). For literature on mol­ecules containing the cyano­pyridine moiety and their ability to act as ligands towards transition metal ions and new drugs, see: Alyoubi (2000 ▶); Desai & Shah (2003 ▶); Murata et al. (2004 ▶). For a related structure, see: Fun et al. (1996 ▶).

Experimental

Crystal data

C20H17N3O3 M = 347.37 Triclinic, a = 8.1320 (16) Å b = 10.497 (2) Å c = 10.914 (2) Å α = 77.28 (3)° β = 68.36 (3)° γ = 84.66 (3)° V = 844.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 four-circle diffractometer Absorption correction: ψ scan (semi-empirical, using intensity measurements; North et al., 1968 ▶) T min = 0.981, T max = 0.991 3294 measured reflections 3058 independent reflections 1776 reflections with I > 2σ(I) R int = 0.031 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.169 S = 1.01 3058 reflections 235 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SMART; data reduction: SAINT-Plus (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039127/zs2068sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039127/zs2068Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H17N3O3Z = 2
Mr = 347.37F(000) = 364
Triclinic, P1Dx = 1.366 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1320 (16) ÅCell parameters from 25 reflections
b = 10.497 (2) Åθ = 9–12°
c = 10.914 (2) ŵ = 0.09 mm1
α = 77.28 (3)°T = 293 K
β = 68.36 (3)°Block, colourless
γ = 84.66 (3)°0.20 × 0.10 × 0.10 mm
V = 844.6 (3) Å3
Enraf–Nonius CAD-4 four-circle diffractometer1776 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 25.3°, θmin = 2.0°
ω/2θ scansh = 0→9
Absorption correction: ψ scan (semi-empirical (using intensity measurements); North et al., 1968)k = −12→12
Tmin = 0.981, Tmax = 0.991l = −12→13
3294 measured reflections3 standard reflections every 200 reflections
3058 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.169H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.06P)2 + 0.5P] where P = (Fo2 + 2Fc2)/3
3058 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.2727 (5)−0.1198 (2)1.0345 (3)0.0793 (13)
O20.2820 (4)−0.0923 (2)0.5979 (3)0.0590 (10)
O30.2628 (3)−0.2323 (2)0.8421 (2)0.0535 (9)
N10.4176 (4)0.5786 (2)0.6850 (3)0.0442 (10)
N20.2265 (4)0.6279 (3)0.5721 (3)0.0598 (11)
N30.0259 (5)0.3444 (3)0.5868 (4)0.0697 (14)
C10.6885 (5)0.6715 (3)0.7396 (4)0.0529 (12)
C20.8049 (5)0.7227 (4)0.7807 (4)0.0641 (16)
C30.8678 (5)0.6491 (4)0.8747 (4)0.0630 (16)
C40.8153 (5)0.5217 (4)0.9273 (4)0.0600 (14)
C50.6991 (5)0.4705 (3)0.8868 (4)0.0512 (11)
C60.6330 (4)0.5439 (3)0.7930 (3)0.0433 (11)
C70.5053 (4)0.4907 (3)0.7504 (3)0.0413 (11)
C80.4765 (5)0.3580 (3)0.7747 (3)0.0459 (11)
C90.3556 (4)0.3108 (3)0.7332 (3)0.0429 (11)
C100.2667 (4)0.4028 (3)0.6648 (3)0.0436 (11)
C110.3040 (4)0.5356 (3)0.6404 (3)0.0423 (11)
C120.3250 (4)0.1688 (3)0.7618 (4)0.0453 (11)
C130.3115 (5)0.0937 (3)0.8868 (4)0.0528 (14)
C140.2894 (5)−0.0402 (3)0.9136 (4)0.0496 (11)
C150.2843 (4)−0.1017 (3)0.8137 (3)0.0395 (11)
C160.2939 (4)−0.0246 (3)0.6902 (3)0.0428 (11)
C170.3166 (4)0.1081 (3)0.6633 (3)0.0438 (11)
C180.1322 (5)0.3671 (3)0.6226 (4)0.0477 (11)
C190.2036 (7)−0.0690 (5)1.1506 (5)0.096 (2)
C200.2425 (5)−0.0191 (4)0.4867 (4)0.0641 (16)
H1B0.647200.722900.675600.0630*
H2A0.251000.708800.559400.0720*
H2B0.152500.606000.541100.0720*
H2C0.841200.808700.744100.0770*
H3A0.945200.684900.902600.0750*
H3B0.25970−0.262000.919000.0800*
H4A0.858400.470300.990200.0720*
H5A0.664000.384300.923300.0620*
H8A0.538900.299500.819400.0550*
H13A0.317200.133700.953200.0640*
H17A0.326400.157300.578900.0520*
H19A0.20010−0.136401.226900.1430*
H19B0.08590−0.036101.161400.1430*
H19C0.276900.000701.143900.1430*
H20A0.23850−0.076600.430500.0970*
H20B0.332300.044900.435800.0970*
H20C0.129800.024000.518100.0970*
U11U22U33U12U13U23
O10.144 (3)0.0382 (15)0.0645 (19)0.0084 (16)−0.051 (2)−0.0079 (13)
O20.092 (2)0.0321 (13)0.0648 (17)−0.0016 (13)−0.0419 (16)−0.0090 (12)
O30.0714 (17)0.0284 (12)0.0605 (16)−0.0096 (11)−0.0277 (14)0.0025 (11)
N10.0520 (18)0.0311 (14)0.0546 (18)−0.0009 (12)−0.0285 (15)−0.0023 (13)
N20.078 (2)0.0320 (16)0.088 (2)−0.0033 (15)−0.057 (2)−0.0006 (15)
N30.079 (2)0.055 (2)0.098 (3)−0.0013 (17)−0.060 (2)−0.0120 (19)
C10.059 (2)0.043 (2)0.061 (2)−0.0062 (17)−0.033 (2)0.0034 (17)
C20.069 (3)0.042 (2)0.086 (3)−0.0160 (19)−0.038 (2)0.002 (2)
C30.054 (2)0.062 (3)0.083 (3)−0.015 (2)−0.036 (2)−0.009 (2)
C40.055 (2)0.057 (2)0.075 (3)−0.0006 (19)−0.040 (2)0.002 (2)
C50.056 (2)0.0345 (18)0.067 (2)−0.0051 (16)−0.032 (2)0.0010 (17)
C60.040 (2)0.0341 (17)0.056 (2)−0.0037 (15)−0.0184 (17)−0.0061 (16)
C70.047 (2)0.0307 (17)0.048 (2)0.0006 (15)−0.0227 (17)−0.0021 (15)
C80.053 (2)0.0314 (17)0.061 (2)0.0061 (15)−0.0336 (19)−0.0043 (16)
C90.053 (2)0.0290 (17)0.051 (2)0.0014 (15)−0.0240 (18)−0.0082 (15)
C100.049 (2)0.0335 (17)0.053 (2)−0.0024 (15)−0.0237 (18)−0.0080 (15)
C110.048 (2)0.0345 (18)0.049 (2)0.0027 (15)−0.0250 (18)−0.0056 (15)
C120.049 (2)0.0311 (17)0.061 (2)0.0032 (15)−0.0280 (19)−0.0067 (16)
C130.069 (3)0.0368 (19)0.063 (2)0.0020 (17)−0.037 (2)−0.0086 (17)
C140.064 (2)0.0323 (18)0.056 (2)0.0017 (16)−0.030 (2)−0.0019 (17)
C150.0369 (19)0.0266 (16)0.051 (2)−0.0017 (13)−0.0140 (16)−0.0021 (15)
C160.043 (2)0.0313 (17)0.055 (2)0.0010 (14)−0.0181 (17)−0.0102 (16)
C170.050 (2)0.0322 (17)0.051 (2)−0.0021 (15)−0.0241 (18)−0.0011 (15)
C180.060 (2)0.0331 (18)0.058 (2)0.0024 (16)−0.032 (2)−0.0077 (16)
C190.113 (4)0.086 (4)0.071 (3)0.020 (3)−0.026 (3)−0.001 (3)
C200.077 (3)0.057 (2)0.075 (3)0.000 (2)−0.048 (2)−0.011 (2)
O1—C141.364 (5)C10—C111.401 (5)
O1—C191.387 (6)C10—C181.440 (5)
O2—C161.389 (4)C12—C171.389 (5)
O2—C201.413 (5)C12—C131.388 (5)
O3—C151.350 (4)C13—C141.386 (5)
O3—H3B0.8200C14—C151.398 (5)
N1—C71.354 (4)C15—C161.390 (4)
N1—C111.342 (5)C16—C171.374 (5)
N2—C111.344 (5)C1—H1B0.9300
N3—C181.134 (6)C2—H2C0.9300
N2—H2B0.8600C3—H3A0.9300
N2—H2A0.8600C4—H4A0.9300
C1—C21.378 (6)C5—H5A0.9300
C1—C61.383 (5)C8—H8A0.9300
C2—C31.370 (6)C13—H13A0.9300
C3—C41.374 (6)C17—H17A0.9300
C4—C51.373 (6)C19—H19A0.9600
C5—C61.383 (5)C19—H19B0.9600
C6—C71.478 (5)C19—H19C0.9600
C7—C81.385 (5)C20—H20A0.9600
C8—C91.391 (5)C20—H20B0.9600
C9—C101.401 (5)C20—H20C0.9600
C9—C121.479 (5)
C14—O1—C19119.3 (3)O3—C15—C16122.4 (3)
C16—O2—C20117.4 (3)C14—C15—C16118.3 (3)
C15—O3—H3B109.00O2—C16—C15114.9 (3)
C7—N1—C11119.1 (3)C15—C16—C17121.4 (3)
C11—N2—H2B120.00O2—C16—C17123.7 (3)
H2A—N2—H2B120.00C12—C17—C16120.1 (3)
C11—N2—H2A120.00N3—C18—C10177.1 (4)
C2—C1—C6120.3 (4)C2—C1—H1B120.00
C1—C2—C3121.1 (4)C6—C1—H1B120.00
C2—C3—C4119.2 (4)C1—C2—H2C119.00
C3—C4—C5119.9 (4)C3—C2—H2C119.00
C4—C5—C6121.7 (3)C2—C3—H3A120.00
C5—C6—C7122.2 (3)C4—C3—H3A120.00
C1—C6—C5117.9 (3)C3—C4—H4A120.00
C1—C6—C7119.9 (3)C5—C4—H4A120.00
C6—C7—C8122.3 (3)C4—C5—H5A119.00
N1—C7—C8121.2 (3)C6—C5—H5A119.00
N1—C7—C6116.5 (3)C7—C8—H8A120.00
C7—C8—C9121.0 (3)C9—C8—H8A119.00
C8—C9—C10117.2 (3)C12—C13—H13A120.00
C8—C9—C12120.1 (3)C14—C13—H13A120.00
C10—C9—C12122.7 (3)C12—C17—H17A120.00
C9—C10—C11119.3 (3)C16—C17—H17A120.00
C9—C10—C18122.6 (3)O1—C19—H19A109.00
C11—C10—C18118.0 (3)O1—C19—H19B109.00
N1—C11—C10122.1 (3)O1—C19—H19C109.00
N2—C11—C10122.0 (3)H19A—C19—H19B109.00
N1—C11—N2115.9 (3)H19A—C19—H19C109.00
C13—C12—C17119.2 (3)H19B—C19—H19C109.00
C9—C12—C13119.9 (3)O2—C20—H20A109.00
C9—C12—C17120.9 (3)O2—C20—H20B110.00
C12—C13—C14120.6 (3)O2—C20—H20C110.00
O1—C14—C15116.0 (3)H20A—C20—H20B109.00
C13—C14—C15120.2 (3)H20A—C20—H20C109.00
O1—C14—C13123.8 (3)H20B—C20—H20C109.00
O3—C15—C14119.2 (3)
C19—O1—C14—C1327.2 (7)C12—C9—C10—C11−179.4 (3)
C19—O1—C14—C15−153.2 (4)C12—C9—C10—C183.1 (5)
C20—O2—C16—C15163.1 (3)C8—C9—C12—C1342.3 (5)
C20—O2—C16—C17−18.0 (5)C8—C9—C12—C17−135.1 (4)
C11—N1—C7—C6178.0 (3)C10—C9—C12—C13−137.6 (4)
C11—N1—C7—C8−1.6 (5)C10—C9—C12—C1745.0 (5)
C7—N1—C11—N2−177.7 (3)C9—C10—C11—N1−2.6 (5)
C7—N1—C11—C103.1 (5)C9—C10—C11—N2178.1 (3)
C6—C1—C2—C3−0.1 (6)C18—C10—C11—N1175.0 (3)
C2—C1—C6—C5−0.6 (5)C18—C10—C11—N2−4.3 (5)
C2—C1—C6—C7178.7 (3)C9—C12—C13—C14−177.6 (4)
C1—C2—C3—C40.8 (6)C17—C12—C13—C14−0.2 (6)
C2—C3—C4—C5−1.0 (6)C9—C12—C17—C16177.9 (3)
C3—C4—C5—C60.3 (6)C13—C12—C17—C160.5 (5)
C4—C5—C6—C10.5 (6)C12—C13—C14—O1−179.1 (4)
C4—C5—C6—C7−178.9 (3)C12—C13—C14—C151.4 (6)
C1—C6—C7—N1−15.1 (5)O1—C14—C15—O30.4 (5)
C1—C6—C7—C8164.5 (3)O1—C14—C15—C16177.6 (4)
C5—C6—C7—N1164.2 (3)C13—C14—C15—O3179.9 (4)
C5—C6—C7—C8−16.2 (5)C13—C14—C15—C16−2.8 (6)
N1—C7—C8—C9−0.3 (5)O3—C15—C16—O2−0.8 (5)
C6—C7—C8—C9−179.9 (3)O3—C15—C16—C17−179.7 (3)
C7—C8—C9—C100.8 (5)C14—C15—C16—O2−177.9 (3)
C7—C8—C9—C12−179.2 (3)C14—C15—C16—C173.2 (5)
C8—C9—C10—C110.7 (4)O2—C16—C17—C12179.2 (3)
C8—C9—C10—C18−176.8 (3)C15—C16—C17—C12−2.0 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.862.273.101 (4)162
N2—H2B···N3ii0.862.313.098 (5)152
O3—H3B···O10.822.192.654 (4)116
C1—H1B···N10.932.472.790 (5)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.273.101 (4)162
N2—H2B⋯N3ii0.862.313.098 (5)152

Symmetry codes: (i) ; (ii) .

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