Literature DB >> 21588882

(μ-4,4'-Bipyridine-κN:N')bis-[bis-(N,N-dimethyl-dithio-carbamato-κS,S')zinc(II)].

Mei-Qin Zha1, Xing Li, Yue Bing, Yue Lu.   

Abstract

The title dinuclear Zn(II) complex, [Zn(2)(C(3)H(6)NS(2))(4)(C(10)H(8)N(2))], is centrosymmetric; the mid-point of the C-C bond linking the two pyridine rings is located on an inversion center. The pyridine N atom coordinates to the Zn(II) cation, which is also chelated by two dimethyl-dithio-carbamate anions, giving a trigonal-bipyramidal ZnNS(4) geometry. Weak inter-molecular C-H⋯S hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2010        PMID: 21588882      PMCID: PMC3009053          DOI: 10.1107/S1600536810042650

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Dialkyl­dithio­carbamates have strong metal-binding properties as well as biological functions, see: Jian et al. (2002 ▶); Arora et al. (2003 ▶); Hogarth & Richards (2006 ▶). For related zinc(II) dithio­carbamate compounds, see: Lai et al. (2002 ▶); Chen et al. (2006 ▶); Benson et al. (2007 ▶).

Experimental

Crystal data

[Zn2(C3H6NS2)4(C10H8N2)] M = 767.76 Monoclinic, a = 8.0490 (8) Å b = 13.8770 (14) Å c = 14.8134 (14) Å β = 100.070 (1)° V = 1629.1 (3) Å3 Z = 2 Mo Kα radiation μ = 2.01 mm−1 T = 173 K 0.34 × 0.26 × 0.13 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.540, T max = 0.770 14059 measured reflections 3754 independent reflections 3205 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.101 S = 1.04 3754 reflections 170 parameters H-atom parameters constrained Δρmax = 1.21 e Å−3 Δρmin = −1.95 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810042650/xu5042sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810042650/xu5042Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C3H6NS2)4(C10H8N2)]F(000) = 788
Mr = 767.76Dx = 1.565 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 14059 reflections
a = 8.0490 (8) Åθ = 2.0–27.5°
b = 13.8770 (14) ŵ = 2.01 mm1
c = 14.8134 (14) ÅT = 173 K
β = 100.070 (1)°Block, yellow
V = 1629.1 (3) Å30.34 × 0.26 × 0.13 mm
Z = 2
Bruker SMART 1000 CCD area-detector diffractometer3754 independent reflections
Radiation source: fine-focus sealed tube3205 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→10
Tmin = 0.540, Tmax = 0.770k = −18→15
14059 measured reflectionsl = −18→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0365P)2 + 3.8184P] where P = (Fo2 + 2Fc2)/3
3754 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 1.21 e Å3
0 restraintsΔρmin = −1.95 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.13314 (4)0.27435 (3)0.24330 (2)0.02256 (11)
S10.08181 (9)0.16003 (5)0.10290 (5)0.02256 (11)
S2−0.12799 (10)0.31820 (6)0.15575 (6)0.02636 (18)
S30.39861 (9)0.33093 (6)0.22187 (5)0.02260 (17)
S40.21808 (10)0.41611 (6)0.35942 (6)0.02694 (18)
C1−0.0291 (4)0.1060 (2)0.3154 (2)0.0286 (7)
H1A−0.08870.10490.25410.034*
C2−0.0689 (4)0.0385 (2)0.3764 (2)0.0292 (7)
H2A−0.1562−0.00690.35700.035*
C30.0183 (4)0.0363 (2)0.46632 (19)0.0183 (6)
C40.1429 (4)0.1065 (2)0.4901 (2)0.0236 (6)
H4A0.20650.10840.55040.028*
C50.1731 (4)0.1731 (2)0.4255 (2)0.0235 (6)
H5A0.25680.22090.44340.028*
C6−0.1905 (5)0.1389 (3)−0.0636 (3)0.0444 (10)
H6A−0.07510.1136−0.05030.067*
H6B−0.21230.1658−0.12570.067*
H6C−0.27060.0867−0.05910.067*
C7−0.3640 (5)0.2736 (4)−0.0185 (3)0.0495 (11)
H7A−0.40420.28950.03850.074*
H7B−0.45140.2375−0.05910.074*
H7C−0.33870.3332−0.04890.074*
C8−0.0971 (4)0.2285 (2)0.0785 (2)0.0230 (6)
C90.6095 (5)0.5119 (3)0.2449 (3)0.0372 (8)
H9A0.59710.46090.19850.056*
H9B0.72110.50720.28360.056*
H9C0.59760.57500.21470.056*
C100.4667 (5)0.5812 (3)0.3652 (3)0.0362 (8)
H10A0.36680.57230.39390.054*
H10B0.45700.64210.33120.054*
H10C0.56800.58250.41270.054*
C110.3763 (4)0.4248 (2)0.2965 (2)0.0206 (6)
N10.0906 (3)0.17348 (17)0.33906 (17)0.0203 (5)
N2−0.2105 (3)0.2147 (2)0.0027 (2)0.0331 (7)
N30.4789 (3)0.50091 (19)0.30182 (18)0.0255 (6)
U11U22U33U12U13U23
Zn10.02293 (17)0.02255 (18)0.02164 (18)−0.00291 (12)0.00229 (12)0.00392 (12)
S10.02293 (17)0.02255 (18)0.02164 (18)−0.00291 (12)0.00229 (12)0.00392 (12)
S20.0227 (4)0.0276 (4)0.0287 (4)0.0040 (3)0.0042 (3)0.0005 (3)
S30.0212 (3)0.0237 (4)0.0230 (4)−0.0016 (3)0.0042 (3)−0.0034 (3)
S40.0300 (4)0.0249 (4)0.0284 (4)−0.0040 (3)0.0119 (3)−0.0024 (3)
C10.0389 (18)0.0250 (16)0.0183 (15)−0.0113 (13)−0.0045 (13)0.0017 (12)
C20.0391 (18)0.0238 (16)0.0216 (15)−0.0152 (14)−0.0032 (13)0.0036 (12)
C30.0251 (14)0.0133 (13)0.0171 (13)−0.0003 (11)0.0055 (11)−0.0020 (11)
C40.0269 (15)0.0259 (16)0.0167 (14)−0.0071 (12)0.0002 (11)0.0008 (12)
C50.0240 (14)0.0245 (16)0.0217 (15)−0.0074 (12)0.0032 (12)−0.0016 (12)
C60.039 (2)0.065 (3)0.0268 (18)−0.0130 (19)0.0011 (15)−0.0150 (18)
C70.0289 (19)0.072 (3)0.043 (2)0.0039 (19)−0.0056 (17)0.006 (2)
C80.0222 (14)0.0263 (16)0.0213 (15)−0.0054 (12)0.0057 (11)0.0024 (12)
C90.0364 (18)0.036 (2)0.043 (2)−0.0150 (15)0.0175 (16)−0.0078 (16)
C100.042 (2)0.0242 (17)0.045 (2)−0.0088 (15)0.0146 (16)−0.0106 (15)
C110.0202 (13)0.0212 (14)0.0190 (14)0.0016 (11)−0.0004 (11)0.0035 (11)
N10.0254 (12)0.0168 (12)0.0186 (12)−0.0027 (10)0.0034 (10)0.0014 (9)
N20.0236 (13)0.0464 (18)0.0279 (15)−0.0042 (12)0.0005 (11)0.0005 (13)
N30.0268 (13)0.0219 (13)0.0290 (14)−0.0045 (10)0.0082 (11)−0.0022 (11)
Zn1—N12.064 (2)C5—H5A0.9500
Zn1—S12.5909 (9)C6—N21.467 (5)
Zn1—S22.3488 (9)C6—H6A0.9800
Zn1—S32.3495 (8)C6—H6B0.9800
Zn1—S42.6239 (9)C6—H6C0.9800
S1—C81.710 (3)C7—N21.468 (5)
S2—C81.738 (3)C7—H7A0.9800
S3—C111.738 (3)C7—H7B0.9800
S4—C111.708 (3)C7—H7C0.9800
C1—N11.345 (4)C8—N21.331 (4)
C1—C21.378 (4)C9—N31.466 (4)
C1—H1A0.9500C9—H9A0.9800
C2—C31.393 (4)C9—H9B0.9800
C2—H2A0.9500C9—H9C0.9800
C3—C41.398 (4)C10—N31.471 (4)
C3—C3i1.483 (6)C10—H10A0.9800
C4—C51.383 (4)C10—H10B0.9800
C4—H4A0.9500C10—H10C0.9800
C5—N11.335 (4)C11—N31.334 (4)
N1—Zn1—S2108.37 (7)H6B—C6—H6C109.5
N1—Zn1—S3125.72 (7)N2—C7—H7A109.5
S2—Zn1—S3125.87 (3)N2—C7—H7B109.5
N1—Zn1—S196.55 (7)H7A—C7—H7B109.5
S2—Zn1—S173.36 (3)N2—C7—H7C109.5
S3—Zn1—S196.74 (3)H7A—C7—H7C109.5
N1—Zn1—S496.52 (7)H7B—C7—H7C109.5
S2—Zn1—S4105.85 (3)N2—C8—S1121.7 (3)
S3—Zn1—S472.49 (3)N2—C8—S2120.2 (3)
S1—Zn1—S4166.41 (3)S1—C8—S2118.10 (18)
C8—S1—Zn180.77 (11)N3—C9—H9A109.5
C8—S2—Zn187.75 (11)N3—C9—H9B109.5
C11—S3—Zn188.10 (10)H9A—C9—H9B109.5
C11—S4—Zn180.15 (10)N3—C9—H9C109.5
N1—C1—C2122.7 (3)H9A—C9—H9C109.5
N1—C1—H1A118.6H9B—C9—H9C109.5
C2—C1—H1A118.6N3—C10—H10A109.5
C1—C2—C3120.4 (3)N3—C10—H10B109.5
C1—C2—H2A119.8H10A—C10—H10B109.5
C3—C2—H2A119.8N3—C10—H10C109.5
C2—C3—C4116.4 (3)H10A—C10—H10C109.5
C2—C3—C3i122.1 (3)H10B—C10—H10C109.5
C4—C3—C3i121.5 (3)N3—C11—S4122.4 (2)
C5—C4—C3119.8 (3)N3—C11—S3119.9 (2)
C5—C4—H4A120.1S4—C11—S3117.64 (17)
C3—C4—H4A120.1C5—N1—C1117.4 (3)
N1—C5—C4123.2 (3)C5—N1—Zn1123.2 (2)
N1—C5—H5A118.4C1—N1—Zn1119.4 (2)
C4—C5—H5A118.4C8—N2—C6121.9 (3)
N2—C6—H6A109.5C8—N2—C7121.8 (3)
N2—C6—H6B109.5C6—N2—C7116.3 (3)
H6A—C6—H6B109.5C11—N3—C9123.2 (3)
N2—C6—H6C109.5C11—N3—C10121.8 (3)
H6A—C6—H6C109.5C9—N3—C10115.0 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4A···S3ii0.952.863.782 (3)164
Table 1

Selected bond lengths (Å)

Zn1—N12.064 (2)
Zn1—S12.5909 (9)
Zn1—S22.3488 (9)
Zn1—S32.3495 (8)
Zn1—S42.6239 (9)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯S3i0.952.863.782 (3)164

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Bis(N,N-di-ethyl-dithio-carbamato-κ2S,S')(3-hy-droxy-pyridine-κN)zinc and bis-[N-(2-hy-droxy-eth-yl)-N-methyldithio-carbamato-κ2S,S'](3-hy-droxy-pyridine-κN)zinc: crystal structures and Hirshfeld surface analysis.

Authors:  Mukesh M Jotani; Hadi D Arman; Pavel Poplaukhin; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-11-01
  1 in total

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