Literature DB >> 21588878

A novel inorganic-organic hybrid borate, poly{[Na(2)(C(4)H(2)O(4))(H(3)BO(3))(H(2)O)(4)]·H(3)BO(3)}.

Zhi-Dong Shao1, Yu-Qi Zhang, Shu-Li Wu, Yun-Xiao Liang.   

Abstract

The structure of the title compound, catena-poly[[[di-μ-aqua-μ-fumarato-μ-(boric acid)-disodium]-di-μ-aqua] boric acid monosolvate], contains two crystallographically independent Na(+) cations, each being six-coordinated by one fumarate O atom, one boric acid O atom and four water O atoms in a distorted octa-hedral geometry. Adjacent [NaO(2)(OH(2))(4)] units share edges and are linked into chains propagating parallel to [100]. The free boric acid mol-ecules are connected to the chains through strong inter-molecular O-H⋯O hydrogen bonds. Additional O-H⋯O hydrogen bonds between the water mol-ecules, the free and coordinated boric acid mol-ecules and the fumarate anion lead to the formation of a three-dimensional supra-molecular structure. With the exception of the two water mol-ecules, all other atoms lie on mirror planes.

Entities:  

Year:  2010        PMID: 21588878      PMCID: PMC3009159          DOI: 10.1107/S1600536810041358

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of organic ammonium borates, see: Li et al. (2006 ▶); Wang et al. (2004 ▶); Liu et al. (2008 ▶). For the synthesis of metal borates with neutral amines, see: Sung et al. (2000 ▶); Zhang et al. (2004 ▶); Liu et al. (2006 ▶); Wang et al. (2005 ▶). For borates involving organic acids, see: Tombul et al. (2007 ▶); Wu et al. (2009 ▶). For typical Na—O bond lengths, see: Yi et al. (2005 ▶); Huang et al. (2005 ▶); for B—O bond lengths, see: Li et al. (1999 ▶); Andrews et al. (1983 ▶); Roy et al. (2002 ▶).

Experimental

Crystal data

[Na2(C4H2O4)(H3BO3)(H2O)4]·H3BO3 M = 355.77 Orthorhombic, a = 14.116 (3) Å b = 6.9347 (14) Å c = 14.997 (3) Å V = 1468.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 295 K 0.39 × 0.26 × 0.25 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.924, T max = 0.950 13772 measured reflections 1806 independent reflections 1460 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.103 S = 1.10 1806 reflections 127 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.23 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg & Putz, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810041358/wm2409sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810041358/wm2409Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na2(C4H2O4)(H3BO3)(H2O)4]·H3BO3F(000) = 736
Mr = 355.77Dx = 1.610 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 10305 reflections
a = 14.116 (3) Åθ = 3.1–27.4°
b = 6.9347 (14) ŵ = 0.21 mm1
c = 14.997 (3) ÅT = 295 K
V = 1468.1 (5) Å3Block, colorless
Z = 40.39 × 0.26 × 0.25 mm
Rigaku R-AXIS RAPID diffractometer1806 independent reflections
Radiation source: fine-focus sealed tube1460 reflections with I > 2σ(I)
graphiteRint = 0.023
ω scansθmax = 27.4°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −18→18
Tmin = 0.924, Tmax = 0.950k = −8→8
13772 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0595P)2 + 0.2607P] where P = (Fo2 + 2Fc2)/3
1806 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.62506 (5)0.25000.69475 (5)0.0291 (2)
Na20.37214 (5)0.25000.74696 (5)0.0329 (2)
B10.54673 (15)0.25000.91475 (15)0.0306 (5)
B20.34246 (15)0.25001.10354 (14)0.0272 (4)
C10.58145 (12)0.25000.48138 (12)0.0239 (4)
C20.48259 (12)0.25000.51652 (12)0.0285 (4)
H2A0.47530.25000.57950.034*
C30.40513 (13)0.25000.46889 (13)0.0315 (4)
H3A0.41110.25000.40580.038*
C40.30740 (12)0.25000.50783 (13)0.0269 (4)
O10.64692 (9)0.25000.53758 (9)0.0352 (4)
O20.59437 (9)0.25000.39758 (8)0.0287 (3)
O30.24072 (9)0.25000.45118 (9)0.0367 (4)
O40.29720 (9)0.25000.59059 (9)0.0374 (4)
O50.61770 (9)0.25000.85300 (10)0.0401 (4)
H5A0.67590.25000.87320.050*
O60.45594 (10)0.25000.88318 (10)0.0481 (5)
H6A0.41450.25000.92890.050*
O70.56202 (8)0.25001.00406 (9)0.0402 (4)
H7A0.62180.25001.01740.050*
O80.32662 (9)0.25001.01491 (10)0.0423 (4)
H8A0.26830.25000.99770.050*
O90.27009 (9)0.25001.16470 (9)0.0315 (3)
H9A0.21780.25001.13790.047*
O100.43302 (9)0.25001.13675 (9)0.0366 (4)
H10A0.47190.25001.09430.055*
O110.49721 (7)0.01436 (15)0.71463 (6)0.0354 (3)
H11B0.4694−0.05810.68000.050*
H11A0.5038−0.03410.76960.050*
O120.75426 (7)0.02208 (15)0.69870 (6)0.0358 (3)
H12B0.7608−0.03620.64190.050*
H12A0.7415−0.05220.73740.050*
U11U22U33U12U13U23
Na10.0239 (4)0.0398 (4)0.0238 (4)0.000−0.0013 (3)0.000
Na20.0238 (4)0.0429 (5)0.0321 (5)0.000−0.0002 (3)0.000
B10.0218 (10)0.0481 (13)0.0219 (10)0.000−0.0013 (8)0.000
B20.0218 (9)0.0366 (11)0.0231 (10)0.000−0.0009 (8)0.000
C10.0207 (8)0.0298 (9)0.0211 (8)0.000−0.0003 (6)0.000
C20.0206 (8)0.0431 (10)0.0218 (9)0.0000.0024 (7)0.000
C30.0213 (8)0.0503 (12)0.0230 (9)0.0000.0040 (7)0.000
C40.0175 (8)0.0367 (10)0.0266 (9)0.0000.0022 (7)0.000
O10.0185 (6)0.0632 (10)0.0239 (7)0.000−0.0020 (5)0.000
O20.0210 (6)0.0441 (8)0.0210 (6)0.000−0.0005 (5)0.000
O30.0186 (6)0.0645 (10)0.0270 (7)0.0000.0007 (5)0.000
O40.0231 (7)0.0661 (10)0.0231 (7)0.0000.0019 (5)0.000
O50.0186 (6)0.0795 (11)0.0223 (7)0.000−0.0008 (5)0.000
O60.0194 (7)0.1019 (14)0.0229 (7)0.000−0.0010 (5)0.000
O70.0175 (6)0.0822 (12)0.0208 (7)0.000−0.0013 (5)0.000
O80.0172 (6)0.0852 (11)0.0243 (7)0.000−0.0002 (5)0.000
O90.0206 (6)0.0504 (8)0.0235 (7)0.000−0.0002 (5)0.000
O100.0206 (6)0.0642 (10)0.0248 (7)0.000−0.0012 (5)0.000
O110.0378 (5)0.0379 (5)0.0303 (5)−0.0042 (4)−0.0043 (4)−0.0039 (4)
O120.0384 (5)0.0371 (5)0.0318 (5)−0.0006 (4)0.0005 (4)0.0004 (4)
Na1—O52.3756 (17)C1—O11.251 (2)
Na1—O12.3771 (17)C1—O21.270 (2)
Na1—O12i2.4140 (12)C1—C21.492 (2)
Na1—O122.4140 (12)C2—C31.306 (3)
Na1—O112.4529 (12)C2—H2A0.9500
Na1—O11i2.4529 (12)C3—C41.498 (2)
Na1—Na2ii3.5955 (12)C3—H3A0.9500
Na1—Na23.6552 (12)C4—O41.250 (2)
Na2—O62.3606 (16)C4—O31.268 (2)
Na2—O12iii2.4353 (12)O5—H5A0.8756
Na2—O12iv2.4353 (12)O6—H6A0.9013
Na2—O11i2.4541 (12)O7—H7A0.8673
Na2—O112.4541 (12)O8—H8A0.8627
Na2—O42.5727 (17)O9—H9A0.8400
Na2—Na1iii3.5955 (12)O10—H10A0.8400
B1—O71.357 (3)O11—H11B0.8224
B1—O51.364 (3)O11—H11A0.8951
B1—O61.366 (3)O12—Na2ii2.4353 (12)
B2—O81.348 (3)O12—H12B0.9473
B2—O101.372 (2)O12—H12A0.7967
B2—O91.373 (2)
O5—Na1—O1175.05 (6)O1—C1—O2124.12 (17)
O5—Na1—O12i90.49 (4)O1—C1—C2116.94 (17)
O1—Na1—O12i85.77 (4)O2—C1—C2118.94 (16)
O5—Na1—O1290.49 (4)C3—C2—C1126.15 (18)
O1—Na1—O1285.77 (4)C3—C2—H2A116.9
O12i—Na1—O1281.80 (5)C1—C2—H2A116.9
O5—Na1—O1181.16 (4)C2—C3—C4123.90 (18)
O1—Na1—O11102.48 (4)C2—C3—H3A118.1
O12i—Na1—O11171.52 (5)C4—C3—H3A118.1
O12—Na1—O1196.70 (4)O4—C4—O3125.46 (16)
O5—Na1—O11i81.16 (4)O4—C4—C3119.56 (16)
O1—Na1—O11i102.48 (4)O3—C4—C3114.98 (16)
O12i—Na1—O11i96.70 (4)C1—O1—Na1124.91 (12)
O12—Na1—O11i171.52 (5)C4—O4—Na2149.11 (12)
O11—Na1—O11i83.55 (5)B1—O5—Na1135.26 (12)
O6—Na2—O12iii93.03 (4)B1—O5—H5A117.0
O6—Na2—O12iv93.03 (4)Na1—O5—H5A107.7
O12iii—Na2—O12iv80.93 (5)B1—O6—Na2140.35 (13)
O6—Na2—O11i79.08 (4)B1—O6—H6A110.2
O12iii—Na2—O11i171.82 (5)Na2—O6—H6A109.5
O12iv—Na2—O11i97.21 (4)B1—O7—H7A112.5
O6—Na2—O1179.08 (4)B2—O8—H8A117.0
O12iii—Na2—O1197.21 (4)B2—O9—H9A109.5
O12iv—Na2—O11171.82 (5)B2—O10—H10A109.5
O11i—Na2—O1183.50 (5)Na1—O11—Na296.30 (4)
O6—Na2—O4174.20 (6)Na1—O11—H11B133.0
O12iii—Na2—O491.38 (4)Na2—O11—H11B100.9
O12iv—Na2—O491.38 (4)Na1—O11—H11A106.6
O11i—Na2—O496.64 (4)Na2—O11—H11A98.2
O11—Na2—O496.64 (4)H11B—O11—H11A113.7
O7—B1—O5123.60 (18)Na1—O12—Na2ii95.71 (4)
O7—B1—O6119.43 (18)Na1—O12—H12B109.3
O5—B1—O6116.97 (18)Na2ii—O12—H12B120.7
O8—B2—O10120.84 (18)Na1—O12—H12A105.7
O8—B2—O9122.36 (17)Na2ii—O12—H12A109.3
O10—B2—O9116.80 (17)H12B—O12—H12A113.7
D—H···AD—HH···AD···AD—H···A
O6—H6A···O80.901.792.690 (2)177
O10—H10A···O70.841.862.6973 (19)178
O5—H5A···O4ii0.881.802.6713 (19)177
O7—H7A···O3ii0.871.742.6104 (18)178
O12—H12B···O3v0.952.042.9355 (15)157.8
O12—H12A···O9vi0.802.022.8063 (14)171.5
O11—H11B···O2v0.821.982.8042 (14)175.5
O11—H11A···O10vi0.902.243.0494 (15)150.5
O8—H8A···O1iii0.861.792.6559 (19)180
O9—H9A···O2iii0.841.822.6504 (19)168
Na1—O52.3756 (17)
Na1—O12.3771 (17)
Na1—O122.4140 (12)
Na1—O112.4529 (12)
Na2—O62.3606 (16)
Na2—O12i2.4353 (12)
Na2—O112.4541 (12)
Na2—O42.5727 (17)
B1—O71.357 (3)
B1—O51.364 (3)
B1—O61.366 (3)
B2—O81.348 (3)
B2—O101.372 (2)
B2—O91.373 (2)
O7—B1—O5123.60 (18)
O7—B1—O6119.43 (18)
O5—B1—O6116.97 (18)
O8—B2—O10120.84 (18)
O8—B2—O9122.36 (17)
O10—B2—O9116.80 (17)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6A⋯O80.901.792.690 (2)177
O10—H10A⋯O70.841.862.6973 (19)178
O5—H5A⋯O4ii0.881.802.6713 (19)177
O7—H7A⋯O3ii0.871.742.6104 (18)178
O12—H12B⋯O3iii0.952.042.9355 (15)157.8
O12—H12A⋯O9iv0.802.022.8063 (14)171.5
O11—H11B⋯O2iii0.821.982.8042 (14)175.5
O11—H11A⋯O10iv0.902.243.0494 (15)150.5
O8—H8A⋯O1i0.861.792.6559 (19)180
O9—H9A⋯O2i0.841.822.6504 (19)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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