Literature DB >> 21588825

Diaqua-bis-[1-ethyl-6-fluoro-4-oxo-7-(piperazin-1-yl)-1,4-dihydroquinoline-3-carboxyl-ato]magnesium(II) hexa-hydrate.

Ji-Feng Wen, Wen-Zhe Yin, Ya-Xian Qiao.   

Abstract

In the title compound, [Mg(C(16)H(17)FN(3)O(3))(2)(H(2)O)(2)]·6H(2)O, the Mg(2+) ion (site symmetry ) exhibits a distorted MgO(6) octa-hedral geometry defined by two O,O-bidentate 1-ethyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazin-yl)-3-quinoline-carb-oxyl-ate (norf) anions and two water mol-ecules. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds help to establish the packing.

Entities:  

Year:  2010        PMID: 21588825      PMCID: PMC3009197          DOI: 10.1107/S1600536810039437

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the cadmium, zinc and cobalt(II) complexes of the norf anion, see: Chen et al. (2001 ▶), Wang et al. (2004 ▶) and An et al. (2007 ▶), respectively. For background to the medicinal uses of Norfloxacin [H-norf or 1-ethyl-6-fluoro-1,4-dihydro-4-oxo-7-(1-piperazin­yl)-3-quinoline carb­oxy­lic acid], which is used to treat infections, see: Mizuki et al. (1996 ▶).

Experimental

Crystal data

[Mg(C16H17FN3O3)2(H2O)2]·6H2O M = 805.09 Triclinic, a = 5.0944 (10) Å b = 13.785 (3) Å c = 14.351 (3) Å α = 112.06 (3)° β = 97.59 (3)° γ = 93.74 (3)° V = 918.6 (3) Å3 Z = 1 Mo Kα radiation μ = 0.14 mm−1 T = 295 K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.984, T max = 0.989 7196 measured reflections 3203 independent reflections 1774 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.249 S = 1.00 3203 reflections 278 parameters 14 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039437/hb5638sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039437/hb5638Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(C16H17FN3O3)2(H2O)2]·6H2OZ = 1
Mr = 805.09F(000) = 426
Triclinic, P1Dx = 1.455 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.0944 (10) ÅCell parameters from 3203 reflections
b = 13.785 (3) Åθ = 3.1–25.0°
c = 14.351 (3) ŵ = 0.14 mm1
α = 112.06 (3)°T = 295 K
β = 97.59 (3)°Block, colorless
γ = 93.74 (3)°0.12 × 0.10 × 0.08 mm
V = 918.6 (3) Å3
Bruker APEXII CCD diffractometer3203 independent reflections
Radiation source: fine-focus sealed tube1774 reflections with I > 2σ(I)
graphiteRint = 0.053
phi and ω scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −5→6
Tmin = 0.984, Tmax = 0.989k = −16→15
7196 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.249H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.130P)2 + 1.1685P] where P = (Fo2 + 2Fc2)/3
3203 reflections(Δ/σ)max < 0.001
278 parametersΔρmax = 0.38 e Å3
14 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6643 (11)1.0494 (5)0.1860 (4)0.0542 (15)
H1A0.83741.02500.17800.065*
H1B0.59321.06000.12490.065*
C20.4804 (10)0.9679 (4)0.1990 (4)0.0434 (12)
H2A0.30510.99100.20430.052*
H2B0.46220.90210.13990.052*
C30.6286 (11)1.0513 (4)0.3807 (4)0.0485 (13)
H3A0.70951.03960.44010.058*
H3B0.45821.07650.39320.058*
C40.8076 (12)1.1339 (4)0.3651 (5)0.0563 (15)
H4A0.82671.20000.42390.068*
H4B0.98331.11170.35840.068*
C50.4638 (9)0.8637 (3)0.3026 (3)0.0347 (11)
C60.2314 (9)0.8028 (4)0.2407 (4)0.0379 (11)
H60.14840.82130.18910.046*
C70.1195 (9)0.7150 (3)0.2534 (3)0.0336 (11)
C80.2283 (9)0.6871 (3)0.3335 (3)0.0333 (11)
C90.4682 (9)0.7473 (4)0.3948 (3)0.0360 (11)
H90.55190.72960.44690.043*
C100.5770 (9)0.8300 (4)0.3787 (4)0.0385 (11)
C110.1060 (8)0.6013 (3)0.3537 (3)0.0324 (10)
C12−0.1318 (9)0.5427 (4)0.2836 (3)0.0370 (11)
C13−0.2237 (10)0.5729 (4)0.2062 (4)0.0390 (12)
H13−0.37320.53210.16010.047*
C14−0.2863 (10)0.4475 (4)0.2873 (4)0.0413 (12)
C15−0.2428 (10)0.6777 (4)0.1028 (4)0.0435 (12)
H15A−0.23410.75350.12290.052*
H15B−0.42970.64880.08530.052*
C16−0.1147 (13)0.6332 (5)0.0103 (4)0.0629 (16)
H16A0.06750.66490.02550.094*
H16B−0.20940.6480−0.04440.094*
H16C−0.12010.5583−0.00970.094*
F10.8150 (5)0.8827 (2)0.4368 (2)0.0517 (8)
Mg10.00000.50000.50000.0334 (6)
N10.6945 (10)1.1490 (3)0.2742 (4)0.0570 (13)
H10.65181.20770.27250.068*
N20.5853 (8)0.9511 (3)0.2908 (3)0.0410 (10)
N3−0.1186 (8)0.6557 (3)0.1905 (3)0.0392 (10)
O10.2033 (6)0.5828 (3)0.4305 (2)0.0373 (8)
O2−0.2364 (6)0.4254 (3)0.3645 (2)0.0440 (9)
O3−0.4641 (8)0.3955 (3)0.2116 (3)0.0572 (11)
O1W0.2550 (7)0.3831 (3)0.4608 (3)0.0438 (9)
O2W0.2443 (8)0.2500 (3)0.2582 (3)0.0632 (12)
O3W0.5868 (10)0.2135 (4)0.0401 (3)0.0759 (13)
O4W0.0637 (12)0.1102 (5)0.0279 (6)0.1083 (19)
H3W0.292 (7)0.302 (3)0.247 (5)0.080*
H7W0.027 (14)0.105 (5)−0.0312 (14)0.080*
H1W0.241 (5)0.3441 (18)0.4005 (5)0.080*
H5W0.660 (10)0.263 (3)0.092 (3)0.080*
H4W0.0823 (16)0.237 (4)0.253 (5)0.080*
H6W0.51 (5)0.166 (11)0.050 (5)0.080*
H2W0.407 (2)0.3970 (11)0.4929 (19)0.08 (2)*
H8W−0.008 (8)0.155 (3)0.069 (3)0.080*
U11U22U33U12U13U23
C10.052 (3)0.070 (4)0.059 (4)0.008 (3)0.013 (3)0.045 (3)
C20.049 (3)0.044 (3)0.041 (3)0.000 (2)0.006 (2)0.022 (2)
C30.056 (3)0.042 (3)0.039 (3)−0.008 (3)0.000 (2)0.011 (2)
C40.059 (3)0.047 (3)0.059 (4)−0.009 (3)−0.006 (3)0.025 (3)
C50.040 (3)0.034 (2)0.030 (3)−0.002 (2)0.004 (2)0.015 (2)
C60.047 (3)0.036 (3)0.034 (3)0.000 (2)0.004 (2)0.018 (2)
C70.038 (3)0.030 (2)0.030 (3)−0.002 (2)0.000 (2)0.011 (2)
C80.036 (2)0.034 (2)0.028 (2)−0.003 (2)0.0006 (19)0.012 (2)
C90.035 (2)0.042 (3)0.032 (3)−0.001 (2)0.000 (2)0.018 (2)
C100.041 (3)0.040 (3)0.033 (3)0.000 (2)0.001 (2)0.014 (2)
C110.031 (2)0.037 (2)0.029 (2)−0.002 (2)0.0013 (19)0.015 (2)
C120.040 (3)0.037 (3)0.033 (3)−0.004 (2)−0.001 (2)0.016 (2)
C130.044 (3)0.039 (3)0.033 (3)0.002 (2)−0.004 (2)0.017 (2)
C140.053 (3)0.038 (3)0.030 (3)−0.006 (2)−0.001 (2)0.015 (2)
C150.049 (3)0.048 (3)0.037 (3)0.004 (2)−0.007 (2)0.024 (2)
C160.076 (4)0.073 (4)0.045 (3)0.023 (3)0.001 (3)0.030 (3)
F10.0444 (16)0.0568 (18)0.0516 (19)−0.0141 (14)−0.0135 (13)0.0289 (15)
Mg10.0354 (12)0.0384 (12)0.0304 (12)−0.0011 (10)0.0002 (9)0.0205 (10)
N10.068 (3)0.041 (3)0.068 (3)0.006 (2)0.007 (3)0.030 (2)
N20.053 (3)0.039 (2)0.033 (2)−0.0024 (19)0.0064 (19)0.0177 (19)
N30.045 (2)0.039 (2)0.035 (2)−0.0019 (19)−0.0020 (18)0.0209 (19)
O10.0381 (17)0.0481 (19)0.0322 (18)0.0006 (15)0.0023 (14)0.0247 (15)
O20.0458 (19)0.049 (2)0.038 (2)−0.0101 (16)−0.0070 (15)0.0251 (16)
O30.072 (3)0.051 (2)0.042 (2)−0.020 (2)−0.0172 (19)0.0236 (18)
O1W0.042 (2)0.048 (2)0.044 (2)0.0087 (17)0.0063 (16)0.0205 (17)
O2W0.056 (2)0.059 (3)0.075 (3)−0.011 (2)0.010 (2)0.030 (2)
O3W0.089 (3)0.071 (3)0.057 (3)0.015 (3)0.009 (2)0.013 (2)
O4W0.093 (4)0.090 (4)0.151 (6)0.023 (3)0.041 (4)0.049 (4)
C1—N11.458 (8)C12—C131.366 (6)
C1—C21.498 (6)C12—C141.508 (6)
C1—H1A0.9700C13—N31.335 (6)
C1—H1B0.9700C13—H130.9300
C2—N21.461 (6)C14—O21.254 (5)
C2—H2A0.9700C14—O31.259 (6)
C2—H2B0.9700C15—N31.476 (6)
C3—N21.472 (6)C15—C161.495 (8)
C3—C41.512 (7)C15—H15A0.9700
C3—H3A0.9700C15—H15B0.9700
C3—H3B0.9700C16—H16A0.9600
C4—N11.449 (7)C16—H16B0.9600
C4—H4A0.9700C16—H16C0.9600
C4—H4B0.9700Mg1—O2i2.001 (3)
C5—C61.389 (6)Mg1—O22.001 (3)
C5—N21.394 (5)Mg1—O1i2.085 (3)
C5—C101.412 (6)Mg1—O12.085 (3)
C6—C71.388 (6)Mg1—O1Wi2.094 (3)
C6—H60.9300Mg1—O1W2.094 (3)
C7—C81.403 (6)N1—H10.8600
C7—N31.408 (6)O1W—H1W0.820 (10)
C8—C91.411 (6)O1W—H2W0.818 (17)
C8—C111.443 (6)O2W—H3W0.82 (5)
C9—C101.345 (6)O2W—H4W0.821 (16)
C9—H90.9300O3W—H5W0.82 (4)
C10—F11.362 (5)O3W—H6W0.81 (15)
C11—O11.268 (5)O4W—H8W0.82 (4)
C11—C121.439 (6)O4W—H7W0.82 (3)
N1—C1—C2110.5 (4)N3—C13—C12126.0 (4)
N1—C1—H1A109.5N3—C13—H13117.0
C2—C1—H1A109.5C12—C13—H13117.0
N1—C1—H1B109.5O2—C14—O3123.8 (4)
C2—C1—H1B109.5O2—C14—C12119.4 (4)
H1A—C1—H1B108.1O3—C14—C12116.7 (4)
N2—C2—C1110.1 (4)N3—C15—C16113.9 (4)
N2—C2—H2A109.6N3—C15—H15A108.8
C1—C2—H2A109.6C16—C15—H15A108.8
N2—C2—H2B109.6N3—C15—H15B108.8
C1—C2—H2B109.6C16—C15—H15B108.8
H2A—C2—H2B108.1H15A—C15—H15B107.7
N2—C3—C4111.2 (4)C15—C16—H16A109.5
N2—C3—H3A109.4C15—C16—H16B109.5
C4—C3—H3A109.4H16A—C16—H16B109.5
N2—C3—H3B109.4C15—C16—H16C109.5
C4—C3—H3B109.4H16A—C16—H16C109.5
H3A—C3—H3B108.0H16B—C16—H16C109.5
N1—C4—C3110.0 (4)O2i—Mg1—O2180.0
N1—C4—H4A109.7O2i—Mg1—O1i86.80 (12)
C3—C4—H4A109.7O2—Mg1—O1i93.20 (13)
N1—C4—H4B109.7O2i—Mg1—O193.20 (13)
C3—C4—H4B109.7O2—Mg1—O186.80 (12)
H4A—C4—H4B108.2O1i—Mg1—O1180.0
C6—C5—N2123.6 (4)O2i—Mg1—O1Wi90.04 (15)
C6—C5—C10115.4 (4)O2—Mg1—O1Wi89.96 (15)
N2—C5—C10121.0 (4)O1i—Mg1—O1Wi90.47 (13)
C5—C6—C7122.0 (4)O1—Mg1—O1Wi89.53 (13)
C5—C6—H6119.0O2i—Mg1—O1W89.96 (15)
C7—C6—H6119.0O2—Mg1—O1W90.04 (14)
C6—C7—C8121.3 (4)O1i—Mg1—O1W89.53 (13)
C6—C7—N3120.7 (4)O1—Mg1—O1W90.47 (13)
C8—C7—N3117.9 (4)O1Wi—Mg1—O1W180.0
C7—C8—C9116.7 (4)C4—N1—C1109.6 (4)
C7—C8—C11122.8 (4)C4—N1—H1125.2
C9—C8—C11120.5 (4)C1—N1—H1125.2
C10—C9—C8120.6 (4)C5—N2—C2116.5 (4)
C10—C9—H9119.7C5—N2—C3116.4 (4)
C8—C9—H9119.7C2—N2—C3110.4 (4)
C9—C10—F1118.5 (4)C13—N3—C7119.1 (4)
C9—C10—C5123.9 (4)C13—N3—C15119.2 (4)
F1—C10—C5117.6 (4)C7—N3—C15121.4 (4)
O1—C11—C12123.8 (4)C11—O1—Mg1125.9 (3)
O1—C11—C8120.5 (4)C14—O2—Mg1132.8 (3)
C12—C11—C8115.6 (4)H1W—O1W—H2W115 (2)
C13—C12—C11118.4 (4)H3W—O2W—H4W115 (5)
C13—C12—C14116.7 (4)H5W—O3W—H6W115 (7)
C11—C12—C14124.9 (4)H8W—O4W—H7W115 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2Wii0.862.202.787 (7)126
O1W—H1W···O2W0.82 (1)1.97 (1)2.786 (6)175 (3)
O1W—H2W···O1iii0.82 (2)2.09 (2)2.901 (5)175 (2)
O2W—H3W···O3iv0.82 (5)1.98 (5)2.749 (6)156 (4)
O2W—H4W···N1v0.82 (2)2.36 (4)3.121 (7)154 (5)
O3W—H5W···O3iv0.82 (4)2.18 (4)2.835 (6)137 (5)
O3W—H6W···O4W0.81 (15)2.3 (2)2.890 (8)131 (19)
O4W—H8W···O3Wvi0.82 (4)2.31 (4)2.888 (8)128 (4)
Table 1

Selected bond lengths (Å)

Mg1—O22.001 (3)
Mg1—O12.085 (3)
Mg1—O1W2.094 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2Wi0.862.202.787 (7)126
O1W—H1W⋯O2W0.82 (1)1.97 (1)2.786 (6)175 (3)
O1W—H2W⋯O1ii0.82 (2)2.09 (2)2.901 (5)175 (2)
O2W—H3W⋯O3iii0.82 (5)1.98 (5)2.749 (6)156 (4)
O2W—H4W⋯N1iv0.82 (2)2.36 (4)3.121 (7)154 (5)
O3W—H5W⋯O3iii0.82 (4)2.18 (4)2.835 (6)137 (5)
O3W—H6W⋯O4W0.81 (15)2.3 (2)2.890 (8)131 (19)
O4W—H8W⋯O3Wv0.82 (4)2.31 (4)2.888 (8)128 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  2D molecular square grid with strong blue fluorescent emission: a complex of norfloxacin with zinc(II).

Authors:  Z F Chen; R G Xiong; J Zhang; X T Chen; Z L Xue; X Z You
Journal:  Inorg Chem       Date:  2001-07-30       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Pharmacokinetic interactions related to the chemical structures of fluoroquinolones.

Authors:  Y Mizuki; I Fujiwara; T Yamaguchi
Journal:  J Antimicrob Chemother       Date:  1996-05       Impact factor: 5.790

  3 in total

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