Literature DB >> 21588795

Diazido-(2,2'-bipyrid-yl)dimethanol-nickel(II).

Hong-Gang Li, Shao-Ying Li, Li-Jun Shao.   

Abstract

The title complex, [Ni(N(3))(2)(C(10)H(8)N(2))(CH(3)OH)(2)], lies on a twofold roation axis which runs through the Ni(II) ion and the mid-point of the bipyridine ligand. The Ni(II) ion is coordinated in a distorted octa-hedral environment by two azide ligands in a trans configuration. The methanol ligands are in a cis configuration and their hy-droxy groups form intra-molecular O-H⋯(N,N) hydrogen bonds with the azide ligands.

Entities:  

Year:  2010        PMID: 21588795      PMCID: PMC3009301          DOI: 10.1107/S1600536810038377

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Urtiaga et al. (1995 ▶); Phatchimkun et al. (2009 ▶); Kou et al. (2008 ▶); Hou (2008 ▶).

Experimental

Crystal data

[Ni(N3)2(C10H8N2)(CH4O)2] M = 363.04 Monoclinic, a = 16.8173 (15) Å b = 13.4470 (12) Å c = 7.1848 (6) Å β = 111.238 (1)° V = 1514.4 (2) Å3 Z = 4 Mo Kα radiation μ = 1.31 mm−1 T = 293 K 0.32 × 0.24 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.680, T max = 0.790 3647 measured reflections 1333 independent reflections 1247 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.210 S = 1.02 1333 reflections 106 parameters H-atom parameters constrained Δρmax = 1.08 e Å−3 Δρmin = −0.68 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810038377/lh5134sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038377/lh5134Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(N3)2(C10H8N2)(CH4O)2]F(000) = 752
Mr = 363.04Dx = 1.592 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1564 reflections
a = 16.8173 (15) Åθ = 2.8–27.4°
b = 13.4470 (12) ŵ = 1.31 mm1
c = 7.1848 (6) ÅT = 293 K
β = 111.238 (1)°Block, green
V = 1514.4 (2) Å30.32 × 0.24 × 0.19 mm
Z = 4
Bruker APEXII CCD diffractometer1333 independent reflections
Radiation source: fine-focus sealed tube1247 reflections with I > 2σ(I)
graphiteRint = 0.012
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −15→20
Tmin = 0.680, Tmax = 0.790k = −15→11
3647 measured reflectionsl = −8→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.210H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.1511P)2 + 7.4217P] where P = (Fo2 + 2Fc2)/3
1333 reflections(Δ/σ)max = 0.011
106 parametersΔρmax = 1.08 e Å3
0 restraintsΔρmin = −0.68 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.00000.74532 (6)0.25000.0357 (4)
O10.9127 (2)0.6557 (3)0.1994 (5)0.0403 (8)
H1A0.86790.65890.07660.048*
N10.9185 (2)0.8653 (3)0.2091 (5)0.0267 (8)
N20.9797 (3)0.7545 (3)−0.0390 (6)0.0331 (10)
N30.9118 (3)0.7278 (3)−0.1552 (6)0.0393 (10)
N40.8473 (3)0.7061 (5)−0.2714 (8)0.0713 (16)
C10.8326 (2)0.8578 (3)0.1560 (6)0.0347 (10)
H10.80830.79530.15140.042*
C20.7806 (3)0.9397 (4)0.1091 (7)0.0397 (11)
H20.72200.93270.07500.048*
C30.8157 (3)1.0328 (4)0.1126 (6)0.0374 (10)
H30.78111.08890.07820.045*
C40.9035 (3)1.0414 (3)0.1684 (6)0.0323 (9)
H40.92871.10330.17230.039*
C50.9526 (2)0.9565 (3)0.2179 (5)0.0244 (8)
C60.9097 (4)0.5858 (5)0.3297 (8)0.0599 (16)
H6A0.96630.56190.40210.090*
H6B0.87450.53170.25890.090*
H6C0.88630.61380.42150.090*
U11U22U33U12U13U23
Ni10.0333 (6)0.0382 (6)0.0347 (6)0.0000.0114 (4)0.000
O10.0367 (17)0.0404 (19)0.0380 (17)−0.0107 (14)0.0068 (13)0.0056 (14)
N10.0201 (16)0.0322 (18)0.0275 (17)−0.0002 (13)0.0083 (13)0.0000 (13)
N20.032 (2)0.043 (2)0.024 (2)−0.0043 (14)0.0095 (18)0.0006 (13)
N30.048 (3)0.041 (2)0.031 (2)−0.0041 (19)0.016 (2)0.0055 (17)
N40.057 (3)0.100 (4)0.042 (3)−0.034 (3)0.000 (2)0.003 (3)
C10.0205 (19)0.043 (3)0.038 (2)−0.0039 (17)0.0078 (16)0.0002 (18)
C20.024 (2)0.054 (3)0.041 (2)0.0030 (19)0.0108 (18)−0.002 (2)
C30.029 (2)0.043 (3)0.037 (2)0.0113 (18)0.0087 (18)0.0006 (18)
C40.031 (2)0.033 (2)0.032 (2)0.0023 (17)0.0103 (17)−0.0023 (17)
C50.021 (2)0.033 (2)0.0198 (17)0.0004 (15)0.0069 (14)−0.0010 (15)
C60.052 (3)0.069 (4)0.049 (3)−0.024 (3)0.008 (2)0.008 (3)
Ni1—O11.831 (3)C1—C21.370 (7)
Ni1—O1i1.831 (3)C1—H10.9300
Ni1—N21.982 (4)C2—C31.380 (7)
Ni1—N2i1.982 (4)C2—H20.9300
Ni1—N1i2.068 (4)C3—C41.387 (6)
Ni1—N12.068 (4)C3—H30.9300
O1—C61.340 (6)C4—C51.379 (6)
O1—H1A0.9300C4—H40.9300
N1—C51.346 (5)C5—C5i1.490 (7)
N1—C11.358 (5)C6—H6A0.9600
N2—N31.199 (6)C6—H6B0.9600
N3—N41.142 (6)C6—H6C0.9600
O1—Ni1—O1i97.7 (2)N4—N3—N2176.8 (5)
O1—Ni1—N290.64 (15)N1—C1—C2121.9 (4)
O1i—Ni1—N294.04 (16)N1—C1—H1119.1
O1—Ni1—N2i94.04 (16)C2—C1—H1119.1
O1i—Ni1—N2i90.64 (15)C1—C2—C3119.6 (4)
N2—Ni1—N2i172.9 (2)C1—C2—H2120.2
O1—Ni1—N1i169.78 (14)C3—C2—H2120.2
O1i—Ni1—N1i92.41 (16)C2—C3—C4119.0 (4)
N2—Ni1—N1i87.38 (14)C2—C3—H3120.5
N2i—Ni1—N1i87.08 (15)C4—C3—H3120.5
O1—Ni1—N192.41 (16)C5—C4—C3118.8 (4)
O1i—Ni1—N1169.78 (14)C5—C4—H4120.6
N2—Ni1—N187.08 (15)C3—C4—H4120.6
N2i—Ni1—N187.38 (14)N1—C5—C4122.5 (3)
N1i—Ni1—N177.48 (19)N1—C5—C5i113.9 (2)
C6—O1—Ni1123.5 (3)C4—C5—C5i123.6 (2)
C6—O1—H1A118.2O1—C6—H6A109.5
Ni1—O1—H1A118.2O1—C6—H6B109.5
C5—N1—C1118.2 (3)H6A—C6—H6B109.5
C5—N1—Ni1117.0 (2)O1—C6—H6C109.5
C1—N1—Ni1124.4 (3)H6A—C6—H6C109.5
N3—N2—Ni1118.1 (3)H6B—C6—H6C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1a···N30.932.252.721 (4)111
O1—H1a···N40.932.483.227 (5)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1a⋯N30.932.252.721 (4)111
O1—H1a⋯N40.932.483.227 (5)137
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Di-μ(1,1)-azido-bis-[azido-(5,5'-dimethyl-2,2'-bipyridine)nickel(II)].

Authors:  Jin Hou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

3.  Diazido-bis(5,5'-dimethyl-2,2'-bipyridyl-κN,N')nickel(II) monohydrate.

Authors:  Jaturong Phatchimkun; Palangpon Kongsaeree; Nattawut Suchaichit; Narongsak Chaichit
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08
  3 in total

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