Literature DB >> 21588783

6-Butyryl-5-hy-droxy-4-phenyl-seselin.

Thammarat Aree1, Santi Tip-Pyang, Preecha Sowanthip.   

Abstract

IN THE TITLE COUMARIN COMPOUND (SYSTEMATIC NAME: 6-butyryl-5-hy-droxy-8,8-dimethyl-4-phenyl-2H,8H-benzo[1,2-b;3,4-b']dipyran-2-one), C(24)H(22)O(5), also known as mammea A/AC cyclo D, the chromene and pyran rings are almost coplanar with a maximum deviation from the mean plane of 0.295 (2) Å. The attached phenyl group is inclined at 53.49 (8)° with respect to the chromene ring. The mol-ecular structure is stabilized by an intra-molecular O-H⋯O hydrogen bond. In the crystal, mol-ecules are linked into sheets parallel to (101) by inter-molecular C-H⋯O hydrogen bonds. Adjacent sheets are sustained by inter-molecular C-H⋯π and π-π [centroid-centroid distance = 4.471 (2) Å] inter-actions.

Entities:  

Year:  2010        PMID: 21588783      PMCID: PMC3008009          DOI: 10.1107/S160053681003415X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural characterization of mammea A/AC cyclo D, see: Thebtaranonth et al. (1981 ▶); Morel et al. (1999 ▶); Kaweetripob et al. (2000 ▶). For its anti-HIV activity, see: Márquez et al. (2005 ▶); Bedoya et al. (2005 ▶) and for its anti­cancer activity, see: Reyes-Chilpa et al. (2004 ▶). For related coumarins, see: Mahidol et al. (2002 ▶). For a review on the cytotoxic activity of coumarins, see: Kostova (2005 ▶).

Experimental

Crystal data

C24H22O5 M = 390.42 Monoclinic, a = 17.0746 (4) Å b = 13.4170 (4) Å c = 8.7607 (3) Å β = 90.341 (1)° V = 2006.95 (10) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.40 × 0.32 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.965, T max = 0.986 5484 measured reflections 2115 independent reflections 1714 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.03 2115 reflections 265 parameters 2 restraints H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: Mercury (Macrae et al. 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003415X/ds2051sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003415X/ds2051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H22O5F(000) = 824
Mr = 390.42Dx = 1.292 Mg m3
Monoclinic, CcMelting point = 412–413 K
Hall symbol: C -2ycMo Kα radiation, λ = 0.71073 Å
a = 17.0746 (4) ÅCell parameters from 2083 reflections
b = 13.4170 (4) Åθ = 2.4–24.3°
c = 8.7607 (3) ŵ = 0.09 mm1
β = 90.341 (1)°T = 298 K
V = 2006.95 (10) Å3Block, light yellow
Z = 40.40 × 0.32 × 0.16 mm
Bruker SMART APEXII CCD area-detector diffractometer2115 independent reflections
Radiation source: fine-focus sealed tube1714 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 26.7°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −21→21
Tmin = 0.965, Tmax = 0.986k = −16→12
5484 measured reflectionsl = −11→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0539P)2 + 0.3001P] where P = (Fo2 + 2Fc2)/3
2115 reflections(Δ/σ)max < 0.001
265 parametersΔρmax = 0.13 e Å3
2 restraintsΔρmin = −0.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.37812 (12)0.33800 (15)0.0704 (2)0.0539 (5)
C20.33746 (18)0.2581 (2)0.1325 (4)0.0585 (8)
C30.26471 (17)0.2825 (2)0.2042 (4)0.0527 (7)
H30.23350.23040.23820.063*
C40.23882 (15)0.3763 (2)0.2253 (3)0.0417 (6)
C4A0.28947 (13)0.4585 (2)0.1797 (3)0.0381 (6)
C50.27705 (14)0.5596 (2)0.2138 (3)0.0401 (6)
C60.32418 (15)0.6360 (2)0.1496 (3)0.0418 (6)
C70.38818 (14)0.6053 (2)0.0584 (3)0.0430 (6)
C80.40587 (14)0.5060 (2)0.0336 (3)0.0426 (6)
C8A0.35629 (14)0.4350 (2)0.0958 (3)0.0413 (6)
O20.36629 (16)0.17743 (18)0.1167 (4)0.0866 (8)
O30.22095 (11)0.58102 (16)0.3131 (2)0.0545 (5)
H3O0.21870.64150.32540.065*
C1'0.15739 (15)0.3906 (2)0.2792 (3)0.0423 (6)
C2'0.12989 (18)0.3393 (2)0.4053 (3)0.0517 (7)
H2'0.16390.29980.46230.062*
C3'0.0518 (2)0.3467 (3)0.4467 (3)0.0634 (9)
H3'0.03350.31150.53070.076*
C4'0.00155 (18)0.4058 (3)0.3643 (4)0.0651 (9)
H4'−0.05050.41150.39360.078*
C5'0.02778 (17)0.4563 (2)0.2394 (4)0.0613 (8)
H5'−0.00660.49580.18310.074*
C6'0.10527 (16)0.4491 (2)0.1961 (3)0.0518 (7)
H6'0.12270.48360.11070.062*
O1"0.43245 (11)0.67654 (16)−0.0081 (2)0.0583 (6)
C2"0.51443 (16)0.6551 (2)−0.0456 (3)0.0512 (7)
C3"0.52184 (19)0.5511 (3)−0.1026 (4)0.0659 (9)
H3"0.56240.5355−0.16890.079*
C4"0.47252 (17)0.4806 (3)−0.0619 (3)0.0590 (8)
H4"0.48020.4152−0.09380.071*
C5"0.5349 (2)0.7323 (4)−0.1653 (5)0.0883 (13)
H51"0.50190.7234−0.25330.132*
H53"0.58870.7246−0.19410.132*
H52"0.52710.7979−0.12420.132*
C6"0.56228 (19)0.6696 (3)0.0983 (4)0.0650 (9)
H61"0.55310.73520.13830.098*
H62"0.61690.66210.07540.098*
H63"0.54730.62070.17260.098*
O1"'0.25223 (16)0.75871 (17)0.2771 (3)0.0754 (7)
C1"'0.30374 (18)0.7407 (2)0.1820 (4)0.0534 (7)
C2"'0.3419 (2)0.8263 (2)0.1013 (5)0.0707 (9)
H210.33950.8142−0.00780.085*
H220.39680.82850.13060.085*
C3"'0.3056 (3)0.9268 (3)0.1337 (8)0.1047 (16)
H310.29880.93380.24300.126*
H320.34130.97860.10070.126*
C4"'0.2279 (3)0.9421 (4)0.0562 (8)0.131 (2)
H410.23500.9428−0.05240.197*
H420.20591.00450.08820.197*
H430.19310.88890.08320.197*
U11U22U33U12U13U23
O10.0436 (10)0.0447 (11)0.0734 (13)−0.0010 (8)0.0108 (9)−0.0126 (9)
C20.0485 (16)0.0413 (17)0.086 (2)−0.0067 (13)0.0061 (16)−0.0075 (15)
C30.0431 (15)0.0435 (15)0.0716 (19)−0.0084 (12)0.0022 (13)0.0007 (14)
C40.0370 (13)0.0426 (14)0.0456 (15)−0.0053 (11)−0.0006 (11)0.0026 (11)
C4A0.0330 (13)0.0428 (14)0.0386 (13)−0.0045 (11)−0.0004 (10)−0.0006 (11)
C50.0347 (12)0.0447 (15)0.0410 (13)−0.0012 (11)−0.0023 (10)−0.0002 (12)
C60.0329 (12)0.0441 (15)0.0482 (14)−0.0034 (11)−0.0063 (10)0.0018 (11)
C70.0322 (12)0.0518 (16)0.0450 (14)−0.0107 (11)−0.0031 (10)0.0063 (12)
C80.0368 (12)0.0485 (15)0.0426 (13)−0.0060 (11)0.0001 (10)−0.0046 (12)
C8A0.0357 (14)0.0437 (15)0.0444 (14)−0.0024 (11)0.0000 (11)−0.0062 (11)
O20.0718 (15)0.0470 (14)0.141 (2)0.0045 (12)0.0231 (15)−0.0142 (15)
O30.0476 (11)0.0509 (12)0.0652 (13)−0.0020 (9)0.0161 (9)−0.0061 (10)
C1'0.0368 (13)0.0457 (15)0.0445 (13)−0.0097 (11)0.0020 (10)−0.0001 (12)
C2'0.0556 (17)0.0551 (18)0.0443 (15)−0.0095 (14)−0.0012 (12)0.0048 (13)
C3'0.0620 (19)0.082 (2)0.0466 (17)−0.0215 (17)0.0152 (14)0.0053 (16)
C4'0.0436 (16)0.083 (2)0.069 (2)−0.0096 (15)0.0154 (14)−0.0080 (18)
C5'0.0419 (15)0.071 (2)0.071 (2)0.0020 (14)−0.0005 (14)0.0055 (16)
C6'0.0408 (14)0.0583 (18)0.0564 (16)−0.0082 (12)0.0040 (11)0.0115 (13)
O1"0.0438 (11)0.0547 (13)0.0765 (14)−0.0081 (9)0.0076 (10)0.0172 (10)
C2"0.0376 (14)0.0625 (18)0.0537 (17)−0.0125 (12)0.0047 (11)0.0103 (14)
C3"0.0513 (17)0.086 (3)0.0604 (18)−0.0193 (16)0.0220 (14)−0.0193 (17)
C4"0.0473 (16)0.066 (2)0.0637 (19)−0.0107 (15)0.0178 (13)−0.0189 (16)
C5"0.059 (2)0.117 (3)0.089 (3)−0.016 (2)0.0098 (18)0.045 (2)
C6"0.0623 (19)0.066 (2)0.067 (2)−0.0040 (15)−0.0097 (15)−0.0067 (16)
O1"'0.0721 (15)0.0505 (13)0.1036 (19)0.0059 (11)0.0179 (14)−0.0090 (12)
C1"'0.0393 (14)0.0468 (16)0.0739 (19)−0.0003 (12)−0.0069 (14)0.0006 (15)
C2"'0.0588 (19)0.0437 (18)0.110 (3)−0.0058 (14)−0.0009 (18)0.0087 (18)
C3"'0.089 (3)0.047 (2)0.178 (5)0.001 (2)0.006 (3)0.011 (3)
C4"'0.107 (4)0.086 (4)0.200 (6)0.037 (3)−0.002 (4)0.023 (4)
O1—C8A1.372 (3)C5'—C6'1.382 (4)
O1—C21.389 (4)C5'—H5'0.9300
C2—O21.198 (4)C6'—H6'0.9300
C2—C31.433 (4)O1"—C2"1.468 (3)
C3—C41.347 (4)C2"—C3"1.488 (5)
C3—H30.9300C2"—C6"1.510 (4)
C4—C4A1.458 (3)C2"—C5"1.516 (5)
C4—C1'1.483 (4)C3"—C4"1.317 (4)
C4A—C8A1.397 (3)C3"—H3"0.9300
C4A—C51.406 (3)C4"—H4"0.9300
C5—O31.329 (3)C5"—H51"0.9600
C5—C61.421 (4)C5"—H53"0.9600
C6—C71.418 (4)C5"—H52"0.9600
C6—C1"'1.476 (4)C6"—H61"0.9600
C7—O1"1.353 (3)C6"—H62"0.9600
C7—C81.385 (4)C6"—H63"0.9600
C8—C8A1.388 (4)O1"'—C1"'1.239 (4)
C8—C4"1.457 (4)C1"'—C2"'1.500 (5)
O3—H3O0.8200C2"'—C3"'1.511 (6)
C1'—C2'1.385 (4)C2"'—H210.9700
C1'—C6'1.389 (4)C2"'—H220.9700
C2'—C3'1.387 (4)C3"'—C4"'1.501 (7)
C2'—H2'0.9300C3"'—H310.9700
C3'—C4'1.371 (5)C3"'—H320.9700
C3'—H3'0.9300C4"'—H410.9600
C4'—C5'1.365 (4)C4"'—H420.9600
C4'—H4'0.9300C4"'—H430.9600
C8A—O1—C2122.1 (2)C7—O1"—C2"119.6 (2)
O2—C2—O1116.5 (3)O1"—C2"—C3"110.0 (2)
O2—C2—C3127.9 (3)O1"—C2"—C6"107.5 (2)
O1—C2—C3115.6 (3)C3"—C2"—C6"110.7 (3)
C4—C3—C2124.1 (3)O1"—C2"—C5"104.2 (3)
C4—C3—H3118.0C3"—C2"—C5"112.8 (3)
C2—C3—H3118.0C6"—C2"—C5"111.3 (3)
C3—C4—C4A118.2 (2)C4"—C3"—C2"121.8 (3)
C3—C4—C1'118.3 (2)C4"—C3"—H3"119.1
C4A—C4—C1'123.2 (2)C2"—C3"—H3"119.1
C8A—C4A—C5117.0 (2)C3"—C4"—C8119.4 (3)
C8A—C4A—C4117.5 (2)C3"—C4"—H4"120.3
C5—C4A—C4125.5 (2)C8—C4"—H4"120.3
O3—C5—C4A117.2 (2)C2"—C5"—H51"109.5
O3—C5—C6121.0 (2)C2"—C5"—H53"109.5
C4A—C5—C6121.7 (2)H51"—C5"—H53"109.5
C7—C6—C5117.0 (2)C2"—C5"—H52"109.5
C7—C6—C1"'124.6 (3)H51"—C5"—H52"109.5
C5—C6—C1"'118.4 (3)H53"—C5"—H52"109.5
O1"—C7—C8119.3 (2)C2"—C6"—H61"109.5
O1"—C7—C6118.2 (2)C2"—C6"—H62"109.5
C8—C7—C6122.5 (2)H61"—C6"—H62"109.5
C7—C8—C8A117.7 (2)C2"—C6"—H63"109.5
C7—C8—C4"119.1 (3)H61"—C6"—H63"109.5
C8A—C8—C4"123.1 (3)H62"—C6"—H63"109.5
O1—C8A—C8114.8 (2)O1"'—C1"'—C6119.0 (3)
O1—C8A—C4A121.5 (2)O1"'—C1"'—C2"'118.7 (3)
C8—C8A—C4A123.7 (2)C6—C1"'—C2"'122.3 (3)
C5—O3—H3O109.5C1"'—C2"'—C3"'114.5 (3)
C2'—C1'—C6'118.6 (2)C1"'—C2"'—H21108.6
C2'—C1'—C4120.8 (3)C3"'—C2"'—H21108.6
C6'—C1'—C4120.3 (2)C1"'—C2"'—H22108.6
C1'—C2'—C3'120.2 (3)C3"'—C2"'—H22108.6
C1'—C2'—H2'119.9H21—C2"'—H22107.6
C3'—C2'—H2'119.9C4"'—C3"'—C2"'113.6 (4)
C4'—C3'—C2'120.2 (3)C4"'—C3"'—H31108.9
C4'—C3'—H3'119.9C2"'—C3"'—H31108.9
C2'—C3'—H3'119.9C4"'—C3"'—H32108.9
C5'—C4'—C3'120.1 (3)C2"'—C3"'—H32108.9
C5'—C4'—H4'119.9H31—C3"'—H32107.7
C3'—C4'—H4'119.9C3"'—C4"'—H41109.5
C4'—C5'—C6'120.3 (3)C3"'—C4"'—H42109.5
C4'—C5'—H5'119.9H41—C4"'—H42109.5
C6'—C5'—H5'119.9C3"'—C4"'—H43109.5
C5'—C6'—C1'120.5 (3)H41—C4"'—H43109.5
C5'—C6'—H6'119.8H42—C4"'—H43109.5
C1'—C6'—H6'119.8
C8A—O1—C2—O2−172.2 (3)C4—C4A—C8A—O1−6.5 (3)
C8A—O1—C2—C39.4 (4)C5—C4A—C8A—C8−6.3 (3)
O2—C2—C3—C4175.7 (4)C4—C4A—C8A—C8174.1 (2)
O1—C2—C3—C4−6.1 (5)C3—C4—C1'—C2'50.3 (4)
C2—C3—C4—C4A−3.2 (4)C4A—C4—C1'—C2'−136.1 (3)
C2—C3—C4—C1'170.7 (3)C3—C4—C1'—C6'−124.1 (3)
C3—C4—C4A—C8A9.5 (3)C4A—C4—C1'—C6'49.6 (4)
C1'—C4—C4A—C8A−164.1 (2)C6'—C1'—C2'—C3'0.0 (4)
C3—C4—C4A—C5−170.0 (2)C4—C1'—C2'—C3'−174.5 (3)
C1'—C4—C4A—C516.3 (4)C1'—C2'—C3'—C4'−0.8 (5)
C8A—C4A—C5—O3−169.6 (2)C2'—C3'—C4'—C5'1.1 (5)
C4—C4A—C5—O39.9 (3)C3'—C4'—C5'—C6'−0.7 (5)
C8A—C4A—C5—C68.1 (3)C4'—C5'—C6'—C1'−0.2 (5)
C4—C4A—C5—C6−172.4 (2)C2'—C1'—C6'—C5'0.5 (4)
O3—C5—C6—C7173.0 (2)C4—C1'—C6'—C5'175.0 (3)
C4A—C5—C6—C7−4.6 (3)C8—C7—O1"—C2"−27.2 (3)
O3—C5—C6—C1"'−6.8 (3)C6—C7—O1"—C2"153.9 (2)
C4A—C5—C6—C1"'175.5 (2)C7—O1"—C2"—C3"38.7 (3)
C5—C6—C7—O1"177.9 (2)C7—O1"—C2"—C6"−81.9 (3)
C1"'—C6—C7—O1"−2.3 (4)C7—O1"—C2"—C5"159.9 (3)
C5—C6—C7—C8−1.1 (3)O1"—C2"—C3"—C4"−27.0 (4)
C1"'—C6—C7—C8178.8 (2)C6"—C2"—C3"—C4"91.7 (4)
O1"—C7—C8—C8A−176.1 (2)C5"—C2"—C3"—C4"−142.8 (3)
C6—C7—C8—C8A2.9 (4)C2"—C3"—C4"—C84.1 (5)
O1"—C7—C8—C4"0.9 (4)C7—C8—C4"—C3"10.7 (4)
C6—C7—C8—C4"179.8 (2)C8A—C8—C4"—C3"−172.5 (3)
C2—O1—C8A—C8176.2 (3)C7—C6—C1"'—O1"'−171.8 (3)
C2—O1—C8A—C4A−3.2 (4)C5—C6—C1"'—O1"'8.1 (4)
C7—C8—C8A—O1−178.4 (2)C7—C6—C1"'—C2"'9.6 (4)
C4"—C8—C8A—O14.7 (3)C5—C6—C1"'—C2"'−170.5 (3)
C7—C8—C8A—C4A0.9 (4)O1"'—C1"'—C2"'—C3"'−6.7 (5)
C4"—C8—C8A—C4A−175.9 (2)C6—C1"'—C2"'—C3"'171.9 (3)
C5—C4A—C8A—O1173.1 (2)C1"'—C2"'—C3"'—C4"'−73.8 (6)
Cg1 is the centroid of the C1'–C6'ring.
D—H···AD—HH···AD···AD—H···A
O3—H3O···O1"'0.821.732.464 (3)149.
C3"'—H32···O2i0.972.713.522 (5)142.
C4'—H4'···O2ii0.932.703.396 (4)132.
C6"—H61"···Cg1iii0.962.753.646 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1′–C6′ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O1"′0.821.732.464 (3)149
C3"′—H32⋯O2i0.972.713.522 (5)142
C4′—H4′⋯O2ii0.932.703.396 (4)132
C6"—H61"⋯Cg1iii0.962.753.646 (4)156

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Synthetic and natural coumarins as cytotoxic agents.

Authors:  Irena Kostova
Journal:  Curr Med Chem Anticancer Agents       Date:  2005-01

3.  4-Phenylcoumarins as HIV transcription inhibitors.

Authors:  Luis M Bedoya; Manuela Beltrán; Rocío Sancho; Dionisio A Olmedo; Sonsoles Sánchez-Palomino; Esther del Olmo; José L López-Pérez; Eduardo Muñoz; Arturo San Feliciano; José Alcamí
Journal:  Bioorg Med Chem Lett       Date:  2005-10-15       Impact factor: 2.823

4.  Mammea coumarins from the flowers of Mammea siamensis.

Authors:  Chulabhorn Mahidol; Wirongrong Kaweetripob; Hunsa Prawat; Somsak Ruchirawat
Journal:  J Nat Prod       Date:  2002-05       Impact factor: 4.050

5.  Mesuol, a natural occurring 4-phenylcoumarin, inhibits HIV-1 replication by targeting the NF-kappaB pathway.

Authors:  Nieves Márquez; Rocío Sancho; Luis M Bedoya; José Alcamí; José Luis López-Pérez; Arturo San Feliciano; Bernd L Fiebich; Eduardo Muñoz
Journal:  Antiviral Res       Date:  2005-04-20       Impact factor: 5.970

6.  Chemical investigation of mammea siamensis.

Authors:  W Kaweetripob; C Mahidol; H Prawat; S Ruchirawat
Journal:  Pharm Biol       Date:  2000       Impact factor: 3.503

7.  Cytotoxic effects of mammea type coumarins from Calophyllum brasiliense.

Authors:  Ricardo Reyes-Chilpa; Elizabet Estrada-Muñiz; Teresa Ramírez Apan; Badia Amekraz; Andre Aumelas; Christopher K Jankowski; Mario Vázquez-Torres
Journal:  Life Sci       Date:  2004-08-13       Impact factor: 5.037

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.