Literature DB >> 21588781

10-(2-Pyrid-yloxy)phenanthren-9-ol.

C A M A Huq, S Sivakumar, M Nizammohideen.   

Abstract

In the title compound, C(19)H(13)NO(2), the pyridyl ring makes a dihedral angle of 87.04 (6)° with the plane of the phenanthrene ring system. In the crystal, mol-ecules are linked through weak inter-molecular C-H⋯O hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21588781      PMCID: PMC3008099          DOI: 10.1107/S1600536810033489

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of heterocyclic compounds containing a pyridine ring, see: Amr & Abdulla (2006 ▶); Borgna et al. (1993 ▶); Goda et al. (2004 ▶); Kamal et al. (2007 ▶). For related structures, see: Krivopalov & Shkurko (2005 ▶); Li & Flood (2008 ▶); Meudtner & Hecht (2008 ▶); Richardson et al. (2008 ▶); Schweinfurth et al. (2008 ▶).

Experimental

Crystal data

C19H13NO2 M = 287.30 Monoclinic, a = 8.9379 (6) Å b = 8.6433 (10) Å c = 18.389 (3) Å β = 96.088 (8)° V = 1412.6 (3) Å3 Z = 4 Cu Kα radiation μ = 0.71 mm−1 T = 293 K 0.3 × 0.25 × 0.2 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 2530 measured reflections 2384 independent reflections 1828 reflections with I > 2σ(I) R int = 0.036 2 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.158 S = 1.07 2384 reflections 200 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033489/lx2166sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033489/lx2166Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H13NO2F(000) = 600
Mr = 287.30Dx = 1.351 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.9379 (6) Åθ = 20–32°
b = 8.6433 (10) ŵ = 0.71 mm1
c = 18.389 (3) ÅT = 293 K
β = 96.088 (8)°Block, yellow
V = 1412.6 (3) Å30.3 × 0.25 × 0.2 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.036
Radiation source: fine-focus sealed tubeθmax = 64.9°, θmin = 4.8°
graphiteh = 0→10
ω–2θ scank = 0→10
2530 measured reflectionsl = −21→21
2384 independent reflections2 standard reflections every 100 reflections
1828 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054H-atom parameters constrained
wR(F2) = 0.158w = 1/[σ2(Fo2) + (0.0879P)2 + 0.3509P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2384 reflectionsΔρmax = 0.34 e Å3
200 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0161 (14)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.28079 (19)0.0991 (2)0.50744 (9)0.0552 (5)
O10.48937 (16)0.09045 (15)0.58522 (7)0.0539 (4)
O20.75971 (19)0.19460 (18)0.54090 (8)0.0639 (5)
H20.68700.15720.51610.096*
C10.1729 (3)0.1774 (3)0.46753 (13)0.0687 (7)
H10.09950.12130.43920.082*
C20.1638 (3)0.3354 (3)0.46580 (14)0.0734 (7)
H2A0.08760.38540.43640.088*
C30.2706 (3)0.4179 (3)0.50877 (13)0.0675 (7)
H30.26660.52540.50940.081*
C40.3832 (3)0.3413 (3)0.55083 (12)0.0566 (6)
H40.45660.39490.58030.068*
C50.3832 (2)0.1817 (2)0.54766 (10)0.0470 (5)
C60.5977 (2)0.1611 (2)0.63482 (10)0.0474 (5)
C70.5655 (2)0.1757 (2)0.70924 (11)0.0480 (5)
C80.4266 (3)0.1302 (3)0.73138 (13)0.0596 (6)
H80.35360.08840.69720.072*
C90.3968 (3)0.1465 (3)0.80255 (14)0.0690 (7)
H90.30420.11630.81660.083*
C100.5066 (3)0.2086 (3)0.85376 (14)0.0711 (7)
H100.48700.21970.90210.085*
C110.6431 (3)0.2533 (3)0.83355 (12)0.0619 (6)
H110.71520.29340.86870.074*
C120.6769 (2)0.2399 (2)0.76057 (11)0.0493 (5)
C130.8179 (2)0.2907 (2)0.73679 (11)0.0501 (5)
C140.9345 (3)0.3569 (3)0.78452 (13)0.0637 (6)
H140.91970.37170.83330.076*
C151.0677 (3)0.3998 (3)0.76122 (15)0.0724 (7)
H151.14280.44210.79420.087*
C161.0924 (3)0.3807 (3)0.68872 (15)0.0711 (7)
H161.18370.41070.67310.085*
C170.9837 (3)0.3184 (3)0.64021 (13)0.0610 (6)
H171.00130.30560.59160.073*
C180.8444 (2)0.2729 (2)0.66282 (11)0.0499 (5)
C190.7291 (2)0.2060 (2)0.61153 (10)0.0490 (5)
U11U22U33U12U13U23
N10.0622 (11)0.0553 (11)0.0456 (10)0.0030 (9)−0.0056 (8)−0.0065 (8)
O10.0661 (9)0.0412 (8)0.0506 (8)0.0005 (6)−0.0119 (7)−0.0040 (6)
O20.0903 (11)0.0595 (9)0.0425 (8)−0.0129 (8)0.0099 (7)−0.0048 (7)
C10.0683 (14)0.0799 (17)0.0541 (13)0.0067 (13)−0.0111 (11)−0.0061 (12)
C20.0766 (16)0.0800 (18)0.0613 (15)0.0221 (14)−0.0028 (12)0.0118 (13)
C30.0822 (16)0.0522 (14)0.0689 (15)0.0120 (12)0.0120 (13)0.0076 (11)
C40.0687 (14)0.0476 (12)0.0531 (12)0.0002 (10)0.0046 (10)−0.0013 (10)
C50.0572 (12)0.0475 (11)0.0356 (10)0.0030 (9)0.0022 (8)−0.0007 (8)
C60.0610 (12)0.0360 (10)0.0427 (10)−0.0001 (9)−0.0062 (9)−0.0026 (8)
C70.0594 (12)0.0371 (10)0.0463 (11)0.0049 (9)0.0004 (9)0.0001 (8)
C80.0681 (14)0.0507 (12)0.0596 (13)−0.0014 (11)0.0040 (11)−0.0012 (10)
C90.0797 (16)0.0602 (15)0.0705 (16)−0.0034 (12)0.0234 (13)0.0006 (12)
C100.1028 (19)0.0614 (15)0.0528 (13)−0.0004 (14)0.0252 (13)−0.0022 (11)
C110.0860 (17)0.0543 (13)0.0444 (12)−0.0012 (12)0.0023 (11)−0.0055 (10)
C120.0646 (13)0.0387 (10)0.0431 (11)0.0052 (9)−0.0009 (9)−0.0002 (8)
C130.0608 (13)0.0403 (10)0.0471 (11)0.0044 (9)−0.0051 (9)−0.0016 (9)
C140.0711 (15)0.0630 (14)0.0534 (13)−0.0028 (12)−0.0099 (11)−0.0073 (11)
C150.0687 (15)0.0661 (16)0.0781 (17)−0.0094 (13)−0.0118 (13)−0.0095 (13)
C160.0618 (14)0.0638 (15)0.0872 (18)−0.0101 (12)0.0058 (12)−0.0036 (14)
C170.0701 (14)0.0528 (13)0.0607 (13)−0.0049 (11)0.0100 (11)−0.0015 (11)
C180.0617 (13)0.0386 (10)0.0483 (11)0.0018 (9)0.0008 (9)−0.0011 (8)
C190.0679 (13)0.0386 (11)0.0401 (11)0.0022 (9)0.0028 (9)−0.0016 (8)
N1—C51.323 (3)C8—H80.9300
N1—C11.333 (3)C9—C101.394 (4)
O1—C51.364 (2)C9—H90.9300
O1—C61.398 (2)C10—C111.368 (4)
O2—C191.359 (2)C10—H100.9300
O2—H20.8200C11—C121.411 (3)
C1—C21.368 (4)C11—H110.9300
C1—H10.9300C12—C131.445 (3)
C2—C31.372 (4)C13—C141.411 (3)
C2—H2A0.9300C13—C181.413 (3)
C3—C41.373 (3)C14—C151.359 (3)
C3—H30.9300C14—H140.9300
C4—C51.381 (3)C15—C161.384 (4)
C4—H40.9300C15—H150.9300
C6—C191.350 (3)C16—C171.359 (3)
C6—C71.434 (3)C16—H160.9300
C7—C81.403 (3)C17—C181.410 (3)
C7—C121.411 (3)C17—H170.9300
C8—C91.370 (3)C18—C191.441 (3)
C5—N1—C1116.8 (2)C11—C10—C9120.6 (2)
C5—O1—C6118.32 (15)C11—C10—H10119.7
C19—O2—H2109.5C9—C10—H10119.7
N1—C1—C2123.9 (2)C10—C11—C12121.5 (2)
N1—C1—H1118.1C10—C11—H11119.3
C2—C1—H1118.1C12—C11—H11119.3
C1—C2—C3118.0 (2)C7—C12—C11117.5 (2)
C1—C2—H2A121.0C7—C12—C13119.54 (19)
C3—C2—H2A121.0C11—C12—C13122.99 (19)
C2—C3—C4119.8 (2)C14—C13—C18117.1 (2)
C2—C3—H3120.1C14—C13—C12123.0 (2)
C4—C3—H3120.1C18—C13—C12119.90 (19)
C3—C4—C5117.5 (2)C15—C14—C13121.9 (2)
C3—C4—H4121.2C15—C14—H14119.0
C5—C4—H4121.2C13—C14—H14119.0
N1—C5—O1111.97 (18)C14—C15—C16120.4 (2)
N1—C5—C4123.98 (19)C14—C15—H15119.8
O1—C5—C4124.04 (18)C16—C15—H15119.8
C19—C6—O1118.98 (18)C17—C16—C15120.2 (2)
C19—C6—C7123.17 (19)C17—C16—H16119.9
O1—C6—C7117.78 (18)C15—C16—H16119.9
C8—C7—C12119.97 (19)C16—C17—C18120.6 (2)
C8—C7—C6121.70 (19)C16—C17—H17119.7
C12—C7—C6118.32 (19)C18—C17—H17119.7
C9—C8—C7121.1 (2)C17—C18—C13119.8 (2)
C9—C8—H8119.5C17—C18—C19120.7 (2)
C7—C8—H8119.5C13—C18—C19119.50 (19)
C8—C9—C10119.4 (2)C6—C19—O2123.53 (19)
C8—C9—H9120.3C6—C19—C18119.55 (18)
C10—C9—H9120.3O2—C19—C18116.91 (18)
C5—N1—C1—C20.4 (3)C10—C11—C12—C7−1.2 (3)
N1—C1—C2—C3−1.2 (4)C10—C11—C12—C13177.9 (2)
C1—C2—C3—C41.0 (4)C7—C12—C13—C14179.54 (19)
C2—C3—C4—C50.0 (3)C11—C12—C13—C140.5 (3)
C1—N1—C5—O1−178.97 (18)C7—C12—C13—C18−1.3 (3)
C1—N1—C5—C40.6 (3)C11—C12—C13—C18179.68 (19)
C6—O1—C5—N1−174.68 (17)C18—C13—C14—C15−1.1 (3)
C6—O1—C5—C45.7 (3)C12—C13—C14—C15178.1 (2)
C3—C4—C5—N1−0.9 (3)C13—C14—C15—C160.7 (4)
C3—C4—C5—O1178.70 (18)C14—C15—C16—C17−0.3 (4)
C5—O1—C6—C19−91.9 (2)C15—C16—C17—C180.3 (4)
C5—O1—C6—C790.9 (2)C16—C17—C18—C13−0.7 (3)
C19—C6—C7—C8178.89 (19)C16—C17—C18—C19−179.7 (2)
O1—C6—C7—C8−4.0 (3)C14—C13—C18—C171.1 (3)
C19—C6—C7—C12−0.2 (3)C12—C13—C18—C17−178.16 (19)
O1—C6—C7—C12176.95 (16)C14—C13—C18—C19−179.92 (19)
C12—C7—C8—C9−0.2 (3)C12—C13—C18—C190.8 (3)
C6—C7—C8—C9−179.3 (2)O1—C6—C19—O23.9 (3)
C7—C8—C9—C10−0.3 (4)C7—C6—C19—O2−179.02 (18)
C8—C9—C10—C110.0 (4)O1—C6—C19—C18−177.34 (17)
C9—C10—C11—C120.7 (4)C7—C6—C19—C18−0.2 (3)
C8—C7—C12—C110.9 (3)C17—C18—C19—C6178.89 (19)
C6—C7—C12—C11−179.97 (18)C13—C18—C19—C6−0.1 (3)
C8—C7—C12—C13−178.16 (18)C17—C18—C19—O2−2.2 (3)
C6—C7—C12—C130.9 (3)C13—C18—C19—O2178.76 (17)
Cg1 and Cg2 are the centroids of the N1/C1–C5 and C6/C7/C12/C13/C18/C19 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C3—H3···O2i0.932.593.475 (3)159.
C10—H10···Cg1ii0.932.863.691 (3)150
C15—H15···Cg2iii0.932.803.537 (3)137
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the N1/C1–C5 and C6/C7/C12/C13/C18/C19 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2i0.932.593.475 (3)159
C10—H10⋯Cg1ii0.932.863.691 (3)150
C15—H15⋯Cg2iii0.932.803.537 (3)137

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

1.  Anti-inflammatory profile of some synthesized heterocyclic pyridone and pyridine derivatives fused with steroidal structure.

Authors:  Abdel-Galil E Amr; Mohamed M Abdulla
Journal:  Bioorg Med Chem       Date:  2006-03-20       Impact factor: 3.641

2.  Pure C-H hydrogen bonding to chloride ions: a preorganized and rigid macrocyclic receptor.

Authors:  Yongjun Li; Amar H Flood
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Helicity inversion in responsive foldamers induced by achiral halide ion guests.

Authors:  Robert M Meudtner; Stefan Hecht
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  Synthesis of a new class of 2-anilino substituted nicotinyl arylsulfonylhydrazides as potential anticancer and antibacterial agents.

Authors:  Ahmed Kamal; M Naseer A Khan; K Srinivasa Reddy; K Rohini
Journal:  Bioorg Med Chem       Date:  2006-10-18       Impact factor: 3.641

6.  Synthesis, antimicrobial activity and conformational analysis of novel substituted pyridines: BF(3)-promoted reaction of hydrazine with 2-alkoxy pyridines.

Authors:  Fatma E Goda; Alaa A-M Abdel-Aziz; Omer A Attef
Journal:  Bioorg Med Chem       Date:  2004-04-15       Impact factor: 3.641

7.  4,5-di(2-pyridyl)-1,2,3-triazolate: the elusive member of a family of bridging ligands that facilitate strong metal-metal interactions.

Authors:  Chris Richardson; Christopher M Fitchett; F Richard Keene; Peter J Steel
Journal:  Dalton Trans       Date:  2008-03-27       Impact factor: 4.390

8.  1,3-Dipolar cycloaddition of alkynes to azides. Construction of operationally functional metal responsive fluorophores.

Authors:  David Schweinfurth; Kenneth I Hardcastle; Uwe H F Bunz
Journal:  Chem Commun (Camb)       Date:  2008-03-28       Impact factor: 6.222

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  1 in total

1.  The crystal structures and Hirshfeld surface analyses of four 3,5-diacetyl-2-methyl-2,3-di-hydro-1,3,4-thia-diazol-2-yl derivatives.

Authors:  M NizamMohideen; S Syed Abuthahir; V Viswanathan; D Velmurugan; M Karthik Ananth
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-09-10
  1 in total

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