Literature DB >> 21588778

2-Isopropyl-6-methyl-pyrimidin-4(3H)-one.

Madhukar Hemamalini1, Hoong-Kun Fun.   

Abstract

The mol-ecular structure of the title compound, C(8)H(12)N(2)O, indicates that 2-isopropyl-6-methyl-pyrimidin-4-ol (the enol-form) undergoes an enol-to-keto tautomerism during the crystallization process. The pyrimidin-4(3H)-one group is essentially planar, with a maximum deviation of 0.081 (1) Å for the O atom. In the crystal structure, symmetry-related mol-ecules are linked into centrosymmetic dimers via pairs of inter-molecular N-H⋯O hydrogen bonds, generating R(2) (2)(8) rings. These dimers are stacked along the a axis.

Entities:  

Year:  2010        PMID: 21588778      PMCID: PMC3008064          DOI: 10.1107/S1600536810034276

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of pyridinium derivatives, see: Condon et al. (1993 ▶); Maeno et al. (1990 ▶); Gilchrist (1997 ▶); Selby et al. (2002 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C8H12N2O M = 152.20 Monoclinic, a = 4.8627 (2) Å b = 22.6320 (8) Å c = 7.4228 (3) Å β = 96.495 (2)° V = 811.66 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.74 × 0.14 × 0.07 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.940, T max = 0.994 7806 measured reflections 2371 independent reflections 1958 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.103 S = 1.06 2371 reflections 148 parameters All H-atom parameters refined Δρmax = 0.32 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810034276/lh5121sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034276/lh5121Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N2OF(000) = 328
Mr = 152.20Dx = 1.245 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2995 reflections
a = 4.8627 (2) Åθ = 2.9–30.0°
b = 22.6320 (8) ŵ = 0.08 mm1
c = 7.4228 (3) ÅT = 100 K
β = 96.495 (2)°Needle, colourless
V = 811.66 (5) Å30.74 × 0.14 × 0.07 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2371 independent reflections
Radiation source: fine-focus sealed tube1958 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 30.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −5→6
Tmin = 0.940, Tmax = 0.994k = −26→31
7806 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103All H-atom parameters refined
S = 1.06w = 1/[σ2(Fo2) + (0.049P)2 + 0.163P] where P = (Fo2 + 2Fc2)/3
2371 reflections(Δ/σ)max < 0.001
148 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.20 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.77782 (15)0.03007 (3)0.81600 (9)0.02023 (18)
N10.43265 (17)−0.13343 (3)0.84671 (10)0.01613 (18)
N20.75959 (17)−0.06091 (3)0.94759 (10)0.01473 (17)
C10.64511 (19)−0.11546 (4)0.95755 (12)0.01455 (19)
C20.6596 (2)−0.01885 (4)0.82081 (12)0.0158 (2)
C30.4232 (2)−0.03768 (4)0.70385 (12)0.0169 (2)
C40.32239 (19)−0.09370 (4)0.71759 (12)0.0156 (2)
C50.0868 (2)−0.11656 (5)0.58916 (13)0.0190 (2)
C60.7737 (2)−0.15603 (4)1.10544 (13)0.01614 (19)
C70.8468 (3)−0.21559 (5)1.02578 (15)0.0249 (2)
C80.5752 (2)−0.16347 (5)1.25028 (14)0.0222 (2)
H1N20.915 (3)−0.0510 (7)1.0283 (19)0.034 (4)*
H3A0.338 (3)−0.0101 (6)0.6146 (18)0.025 (3)*
H5A−0.064 (3)−0.1299 (6)0.655 (2)0.036 (4)*
H5B0.011 (3)−0.0864 (7)0.503 (2)0.044 (4)*
H5C0.151 (3)−0.1505 (6)0.5237 (19)0.034 (4)*
H6A0.946 (3)−0.1369 (5)1.1613 (16)0.018 (3)*
H7A0.922 (3)−0.2424 (6)1.124 (2)0.031 (3)*
H7B0.984 (3)−0.2117 (6)0.9349 (19)0.031 (4)*
H7C0.681 (3)−0.2348 (6)0.9648 (19)0.036 (4)*
H8A0.661 (3)−0.1874 (6)1.3518 (19)0.029 (3)*
H8B0.408 (3)−0.1849 (6)1.1978 (18)0.031 (4)*
H8C0.519 (3)−0.1249 (6)1.2967 (19)0.032 (4)*
U11U22U33U12U13U23
O10.0210 (4)0.0159 (3)0.0229 (4)−0.0031 (3)−0.0012 (3)0.0032 (3)
N10.0159 (4)0.0163 (4)0.0157 (4)−0.0010 (3)0.0002 (3)−0.0005 (3)
N20.0146 (4)0.0143 (4)0.0150 (4)−0.0008 (3)0.0005 (3)0.0004 (3)
C10.0146 (4)0.0146 (4)0.0146 (4)0.0003 (3)0.0026 (3)−0.0007 (3)
C20.0159 (4)0.0161 (4)0.0156 (4)0.0005 (3)0.0028 (3)0.0007 (3)
C30.0165 (5)0.0185 (4)0.0153 (4)0.0014 (3)0.0006 (3)0.0019 (3)
C40.0143 (4)0.0185 (5)0.0142 (4)0.0005 (3)0.0019 (3)−0.0018 (3)
C50.0164 (5)0.0227 (5)0.0172 (4)−0.0011 (4)−0.0013 (3)−0.0022 (4)
C60.0157 (4)0.0151 (4)0.0168 (4)−0.0011 (3)−0.0015 (3)0.0009 (3)
C70.0301 (6)0.0172 (5)0.0260 (5)0.0036 (4)−0.0026 (4)−0.0004 (4)
C80.0202 (5)0.0268 (5)0.0193 (5)−0.0016 (4)0.0012 (4)0.0061 (4)
O1—C21.2497 (11)C5—H5B0.978 (16)
N1—C11.3105 (12)C5—H5C0.978 (15)
N1—C41.3777 (12)C6—C71.5297 (14)
N2—C11.3595 (12)C6—C81.5332 (14)
N2—C21.3874 (12)C6—H6A0.990 (12)
N2—H1N20.937 (15)C7—H7A0.985 (14)
C1—C61.5114 (13)C7—H7B1.004 (14)
C2—C31.4254 (13)C7—H7C0.980 (15)
C3—C41.3672 (13)C8—H8A0.982 (14)
C3—H3A0.968 (13)C8—H8B0.987 (14)
C4—C51.4972 (13)C8—H8C0.988 (15)
C5—H5A0.973 (16)
C1—N1—C4116.83 (8)H5A—C5—H5C107.8 (12)
C1—N2—C2123.08 (8)H5B—C5—H5C109.9 (12)
C1—N2—H1N2119.2 (9)C1—C6—C7110.47 (8)
C2—N2—H1N2117.7 (9)C1—C6—C8109.54 (8)
N1—C1—N2123.11 (9)C7—C6—C8111.50 (8)
N1—C1—C6119.97 (8)C1—C6—H6A107.5 (7)
N2—C1—C6116.92 (8)C7—C6—H6A108.9 (7)
O1—C2—N2120.02 (9)C8—C6—H6A108.9 (7)
O1—C2—C3126.12 (9)C6—C7—H7A109.9 (8)
N2—C2—C3113.86 (8)C6—C7—H7B112.5 (8)
C4—C3—C2120.21 (9)H7A—C7—H7B109.4 (11)
C4—C3—H3A121.2 (8)C6—C7—H7C110.8 (9)
C2—C3—H3A118.6 (8)H7A—C7—H7C106.5 (12)
C3—C4—N1122.85 (9)H7B—C7—H7C107.6 (11)
C3—C4—C5121.86 (9)C6—C8—H8A110.7 (8)
N1—C4—C5115.27 (8)C6—C8—H8B109.4 (8)
C4—C5—H5A110.6 (9)H8A—C8—H8B106.8 (12)
C4—C5—H5B112.3 (9)C6—C8—H8C111.6 (8)
H5A—C5—H5B107.2 (12)H8A—C8—H8C109.3 (11)
C4—C5—H5C108.9 (8)H8B—C8—H8C109.0 (11)
C4—N1—C1—N2−1.11 (13)C2—C3—C4—N12.79 (14)
C4—N1—C1—C6178.69 (8)C2—C3—C4—C5−175.72 (8)
C2—N2—C1—N10.98 (14)C1—N1—C4—C3−0.79 (13)
C2—N2—C1—C6−178.83 (8)C1—N1—C4—C5177.82 (8)
C1—N2—C2—O1−178.41 (8)N1—C1—C6—C752.88 (12)
C1—N2—C2—C30.98 (12)N2—C1—C6—C7−127.31 (9)
O1—C2—C3—C4176.61 (9)N1—C1—C6—C8−70.32 (11)
N2—C2—C3—C4−2.73 (13)N2—C1—C6—C8109.50 (9)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.937 (15)1.844 (14)2.7809 (11)178.7 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.937 (15)1.844 (14)2.7809 (11)178.7 (10)

Symmetry code: (i) .

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1.  2-Isopropyl-6-methyl-4-oxo-3,4-dihydro-pyrimidin-1-ium 2-carb-oxy-4,6-dinitro-phenolate monohydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30
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