Literature DB >> 21588757

2,6-Diamino-pyridinium 2-carb-oxy-benzoate.

Mohammad T M Al-Dajani, Hassan H Abdallah, Nornisah Mohamed, Mohd Mustaqim Rosli, Hoong-Kun Fun.   

Abstract

In the crystal of the title mol-ecular salt, C(5)H(8)N(3) (+)·C(8)H(5)O(4) (-), the diamino-pyridine cation and the phthalate anion are linked by a pair of N-H⋯O hydrogen bonds. Within the phthalate anion, an almost symmetrical O-H⋯O hydrogen bond is observed. The ion pairs are linked by further N-H⋯O hydrogen bonds, generating a two-dimensional network lying parallel to (10).

Entities:  

Year:  2010        PMID: 21588757      PMCID: PMC3008098          DOI: 10.1107/S1600536810032903

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2,6-diamino­pyridines, see: Abu Zuhri & Cox (1989 ▶); Inuzuka & Fujimoto (1990 ▶); El-Mossalamy (2001 ▶). For background and the biological activity of phthalic acid, see: Brike et al. (2002 ▶); Yamamoto et al. (1990 ▶). For related structures: see: Büyükgüngör & Odabąsoğlu (2006 ▶); Al-Dajani et al. (2009 ▶); Raissi Shabari et al. (2010 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H8N3 +·C8H5O4 M = 275.26 Monoclinic, a = 32.332 (11) Å b = 3.7246 (14) Å c = 24.184 (8) Å β = 123.036 (6)° V = 2441.5 (15) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.47 × 0.10 × 0.03 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.948, T max = 0.996 5492 measured reflections 2757 independent reflections 1869 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.197 S = 1.06 2757 reflections 181 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810032903/hb5557sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032903/hb5557Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H8N3+·C8H5O4F(000) = 1152
Mr = 275.26Dx = 1.498 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 975 reflections
a = 32.332 (11) Åθ = 3.8–28.1°
b = 3.7246 (14) ŵ = 0.11 mm1
c = 24.184 (8) ÅT = 100 K
β = 123.036 (6)°Plate, brown
V = 2441.5 (15) Å30.47 × 0.10 × 0.03 mm
Z = 8
Bruker APEXII DUO CCD area-detector diffractometer2757 independent reflections
Radiation source: fine-focus sealed tube1869 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −36→42
Tmin = 0.948, Tmax = 0.996k = −4→4
5492 measured reflectionsl = −31→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.197H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1138P)2] where P = (Fo2 + 2Fc2)/3
2757 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.40 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.09892 (7)0.9810 (6)0.16036 (9)0.0153 (5)
H1A0.11090.89740.13880.018*
N20.02334 (7)0.8089 (7)0.07262 (10)0.0195 (5)
H2A0.03810.73290.05420.023*
H2B−0.00820.78820.05260.023*
N30.17839 (7)1.1355 (7)0.24299 (10)0.0210 (5)
H3A0.18831.04870.21920.025*
H3B0.19931.22680.28100.025*
C10.04920 (8)0.9585 (7)0.13210 (11)0.0158 (5)
C20.02953 (9)1.0896 (8)0.16702 (11)0.0179 (6)
H2C−0.00421.07540.14940.021*
C30.06092 (9)1.2402 (8)0.22794 (12)0.0191 (6)
H3C0.04781.33090.25100.023*
C40.11140 (9)1.2624 (8)0.25640 (11)0.0169 (5)
H4A0.13191.36360.29800.020*
C50.13083 (8)1.1287 (7)0.22106 (11)0.0153 (5)
O10.26121 (6)−0.0595 (6)0.12827 (8)0.0228 (5)
O20.21888 (6)0.2628 (6)0.15685 (7)0.0191 (4)
H1O20.18160.41810.12250.029*
O30.14264 (6)0.6094 (5)0.10279 (8)0.0193 (5)
O40.06986 (6)0.5317 (6)0.01065 (9)0.0272 (5)
C60.18695 (8)0.1875 (7)0.03925 (11)0.0148 (5)
C70.20221 (9)0.0642 (8)−0.00144 (12)0.0170 (5)
H7A0.2336−0.03360.01790.020*
C80.17220 (9)0.0825 (8)−0.06960 (12)0.0193 (6)
H8A0.18360.0045−0.09550.023*
C90.12537 (9)0.2173 (8)−0.09827 (11)0.0195 (6)
H9A0.10450.2259−0.14400.023*
C100.10903 (9)0.3408 (7)−0.05943 (11)0.0159 (5)
H10A0.07720.4316−0.07970.019*
C110.13903 (8)0.3330 (7)0.00959 (11)0.0145 (5)
C120.11507 (8)0.4977 (7)0.04302 (11)0.0161 (5)
C130.22537 (8)0.1262 (7)0.11219 (11)0.0154 (5)
U11U22U33U12U13U23
N10.0160 (10)0.0203 (12)0.0105 (9)0.0010 (9)0.0079 (8)−0.0016 (9)
N20.0140 (9)0.0278 (13)0.0146 (9)−0.0007 (10)0.0066 (8)−0.0046 (10)
N30.0140 (9)0.0340 (15)0.0135 (9)−0.0008 (10)0.0064 (8)−0.0042 (10)
C10.0162 (11)0.0156 (13)0.0147 (10)0.0007 (10)0.0079 (9)0.0025 (10)
C20.0162 (11)0.0185 (14)0.0181 (11)0.0005 (11)0.0089 (10)0.0018 (11)
C30.0236 (12)0.0207 (14)0.0175 (11)0.0051 (12)0.0141 (10)0.0020 (11)
C40.0196 (11)0.0175 (13)0.0136 (11)−0.0001 (11)0.0091 (10)−0.0004 (11)
C50.0170 (11)0.0148 (13)0.0111 (10)−0.0031 (10)0.0057 (9)−0.0006 (10)
O10.0190 (9)0.0286 (11)0.0184 (8)0.0056 (9)0.0085 (7)0.0023 (9)
O20.0170 (8)0.0274 (11)0.0127 (8)0.0010 (8)0.0078 (7)−0.0007 (8)
O30.0155 (8)0.0272 (11)0.0151 (8)0.0011 (8)0.0084 (7)−0.0045 (8)
O40.0152 (9)0.0409 (13)0.0235 (9)−0.0007 (9)0.0092 (7)−0.0105 (10)
C60.0147 (10)0.0162 (13)0.0134 (10)−0.0004 (10)0.0076 (9)0.0005 (10)
C70.0161 (11)0.0185 (13)0.0184 (11)−0.0018 (11)0.0107 (9)−0.0010 (11)
C80.0261 (13)0.0192 (14)0.0191 (11)−0.0028 (12)0.0166 (10)−0.0008 (11)
C90.0209 (12)0.0205 (14)0.0126 (10)−0.0037 (11)0.0062 (9)−0.0003 (11)
C100.0141 (10)0.0156 (13)0.0162 (11)−0.0024 (10)0.0072 (9)−0.0013 (10)
C110.0153 (10)0.0127 (12)0.0162 (11)−0.0016 (10)0.0090 (9)−0.0017 (10)
C120.0159 (11)0.0176 (14)0.0161 (11)−0.0023 (11)0.0095 (9)−0.0015 (11)
C130.0141 (10)0.0166 (13)0.0161 (11)−0.0004 (10)0.0086 (9)0.0020 (10)
N1—C11.364 (3)O2—C131.310 (3)
N1—C51.368 (3)O2—H1O21.1764
N1—H1A0.8600O3—C121.285 (3)
N2—C11.329 (3)O3—H1O21.2919
N2—H2A0.8600O4—C121.232 (3)
N2—H2B0.8600C6—C71.397 (3)
N3—C51.326 (3)C6—C111.413 (3)
N3—H3A0.8600C6—C131.522 (3)
N3—H3B0.8600C7—C81.385 (3)
C1—C21.393 (3)C7—H7A0.9300
C2—C31.373 (3)C8—C91.372 (3)
C2—H2C0.9300C8—H8A0.9300
C3—C41.386 (3)C9—C101.383 (3)
C3—H3C0.9300C9—H9A0.9300
C4—C51.399 (3)C10—C111.401 (3)
C4—H4A0.9300C10—H10A0.9300
O1—C131.217 (3)C11—C121.521 (3)
C1—N1—C5123.8 (2)C12—O3—H1O2100.1
C1—N1—H1A118.1C7—C6—C11118.6 (2)
C5—N1—H1A118.1C7—C6—C13112.8 (2)
C1—N2—H2A120.0C11—C6—C13128.5 (2)
C1—N2—H2B120.0C8—C7—C6122.3 (2)
H2A—N2—H2B120.0C8—C7—H7A118.8
C5—N3—H3A120.0C6—C7—H7A118.8
C5—N3—H3B120.0C9—C8—C7118.9 (2)
H3A—N3—H3B120.0C9—C8—H8A120.5
N2—C1—N1116.2 (2)C7—C8—H8A120.5
N2—C1—C2125.2 (2)C8—C9—C10120.2 (2)
N1—C1—C2118.5 (2)C8—C9—H9A119.9
C3—C2—C1118.6 (2)C10—C9—H9A119.9
C3—C2—H2C120.7C9—C10—C11122.0 (2)
C1—C2—H2C120.7C9—C10—H10A119.0
C2—C3—C4122.6 (2)C11—C10—H10A119.0
C2—C3—H3C118.7C10—C11—C6117.9 (2)
C4—C3—H3C118.7C10—C11—C12113.7 (2)
C3—C4—C5118.3 (2)C6—C11—C12128.3 (2)
C3—C4—H4A120.8O4—C12—O3122.4 (2)
C5—C4—H4A120.8O4—C12—C11118.4 (2)
N3—C5—N1118.0 (2)O3—C12—C11119.1 (2)
N3—C5—C4123.9 (2)O1—C13—O2120.6 (2)
N1—C5—C4118.1 (2)O1—C13—C6119.3 (2)
C13—O2—H1O299.9O2—C13—C6120.0 (2)
C5—N1—C1—N2179.6 (2)C9—C10—C11—C6−1.2 (4)
C5—N1—C1—C2−0.7 (4)C9—C10—C11—C12177.1 (2)
N2—C1—C2—C3−179.5 (3)C7—C6—C11—C100.9 (4)
N1—C1—C2—C30.9 (4)C13—C6—C11—C10−175.8 (2)
C1—C2—C3—C4−0.9 (4)C7—C6—C11—C12−177.1 (3)
C2—C3—C4—C50.7 (4)C13—C6—C11—C126.2 (4)
C1—N1—C5—N3−179.8 (2)C10—C11—C12—O419.0 (4)
C1—N1—C5—C40.5 (4)C6—C11—C12—O4−162.9 (3)
C3—C4—C5—N3179.8 (3)C10—C11—C12—O3−158.2 (2)
C3—C4—C5—N1−0.4 (4)C6—C11—C12—O319.9 (4)
C11—C6—C7—C80.5 (4)C7—C6—C13—O1−9.9 (3)
C13—C6—C7—C8177.8 (3)C11—C6—C13—O1167.0 (3)
C6—C7—C8—C9−1.8 (4)C7—C6—C13—O2172.4 (2)
C7—C8—C9—C101.6 (4)C11—C6—C13—O2−10.8 (4)
C8—C9—C10—C11−0.1 (4)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O31.181.292.437 (3)162
N1—H1A···O30.861.982.828 (3)167
N2—H2A···O40.861.982.834 (3)177
N2—H2B···O4i0.862.102.851 (3)145
N3—H3A···O2ii0.862.353.042 (3)138
N3—H3B···O1iii0.862.012.858 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O31.181.292.437 (3)162
N1—H1A⋯O30.861.982.828 (3)167
N2—H2A⋯O40.861.982.834 (3)177
N2—H2B⋯O4i0.862.102.851 (3)145
N3—H3A⋯O2ii0.862.353.042 (3)138
N3—H3B⋯O1iii0.862.012.858 (3)171

Symmetry codes: (i) ; (ii) ; (iii) .

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