Literature DB >> 21588721

Dimethyl 3,3'-diphenyl-2,2'-[(S)-thio-phene-2,5-diylbis(carbonyl-aza-nedi-yl)]dipropano-ate.

Guang-Ming Xia1, Jing Liu, Zhen Li, Mu-Wei Ji, Guo-Xin Sun.   

Abstract

The asymmetric unit of the title compound, C(26)H(26)N(2)O(6)S, contains two independent mol-ecules; each has twofold symmetry with the S atom and the mid-point of the C-C bond of the thio-phene ring located on a twofold rotation axis. In the two mol-ecules, the terminal benzene rings are oriented at dihedral angles of 65.8 (3) and 63.5 (3)° with respect to the central thio-phene rings. The meth-oxy-carbonyl group of one mol-ecule is disordered over two positions with site-occupancy factors of 0.277 (12) and 0.723 (12). Inter-molecular N-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2010        PMID: 21588721      PMCID: PMC3007902          DOI: 10.1107/S1600536810033210

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of thio­phene derivatives, see: Xia et al. (2010 ▶).

Experimental

Crystal data

C26H26N2O6S M = 494.56 Orthorhombic, a = 9.0769 (3) Å b = 29.6371 (7) Å c = 9.3767 (2) Å V = 2522.45 (12) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 120 K 0.36 × 0.24 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009 ▶) T min = 0.867, T max = 1.000 6802 measured reflections 4233 independent reflections 3315 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.187 S = 1.10 4233 reflections 288 parameters 1 restraint H-atom parameters constrained Δρmax = 0.90 e Å−3 Δρmin = −0.70 e Å−3 Absolute structure: Flack (1983 ▶), 1669 Friedel pairs Flack parameter: 0.00 (18) Data collection: CrysAlis PRO CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO CCD; data reduction: CrysAlis PRO RED (Oxford Diffraction, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810033210/xu5003sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033210/xu5003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H26N2O6SF(000) = 1040
Mr = 494.56Dx = 1.302 Mg m3
Orthorhombic, P21212Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2 2abCell parameters from 4047 reflections
a = 9.0769 (3) Åθ = 3.4–25.3°
b = 29.6371 (7) ŵ = 0.17 mm1
c = 9.3767 (2) ÅT = 120 K
V = 2522.45 (12) Å3Block, colourless
Z = 40.36 × 0.24 × 0.10 mm
Oxford Diffraction Xcalibur Eos Gemini diffractometer4233 independent reflections
Radiation source: Enhance (Mo) X-ray Source3315 reflections with I > 2σ(I)
graphiteRint = 0.051
Detector resolution: 16.0355 pixels mm-1θmax = 25.0°, θmin = 3.4°
ω scansh = −6→10
Absorption correction: multi-scan (CrysAlis PRO RED; Oxford Diffraction, 2009)k = −28→35
Tmin = 0.867, Tmax = 1.000l = −7→11
6802 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.068H-atom parameters constrained
wR(F2) = 0.187w = 1/[σ2(Fo2) + (0.1124P)2 + 0.8367P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
4233 reflectionsΔρmax = 0.90 e Å3
288 parametersΔρmin = −0.70 e Å3
1 restraintAbsolute structure: Flack (1983), 1669 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.3969 (8)0.6948 (2)0.3748 (8)0.0676 (18)
H1A0.31120.67710.35290.101*
H1B0.42590.71170.29200.101*
H1C0.37450.71530.45120.101*
C20.6263 (6)0.68418 (15)0.4908 (5)0.0361 (11)
C30.7416 (5)0.65073 (14)0.5404 (5)0.0336 (11)
H30.75450.65510.64320.040*
C40.8884 (6)0.66076 (14)0.4700 (5)0.0338 (11)
H4B0.90360.69320.46850.041*
H4A0.88550.65030.37200.041*
C51.0183 (6)0.63839 (14)0.5462 (4)0.0325 (10)
C61.0574 (6)0.59423 (18)0.5155 (7)0.0529 (15)
H61.00760.57820.44510.063*
C71.1729 (8)0.5739 (2)0.5915 (8)0.069 (2)
H71.20170.54460.56910.083*
C81.2438 (6)0.59686 (19)0.6990 (7)0.0549 (15)
H81.31770.58280.75140.066*
C91.2052 (7)0.64021 (18)0.7282 (6)0.0521 (14)
H91.25510.65620.79850.063*
C101.0909 (6)0.66065 (16)0.6527 (5)0.0433 (13)
H101.06350.69000.67530.052*
C110.6350 (5)0.57915 (14)0.6197 (4)0.0281 (10)
C120.5668 (5)0.53566 (13)0.5707 (4)0.0281 (10)
C130.5371 (6)0.52036 (15)0.4374 (4)0.0352 (12)
H130.56390.53570.35480.042*
C14A0.207 (2)0.6027 (7)0.130 (2)0.047 (4)0.275 (12)
H14B0.17400.59000.04110.070*0.275 (12)
H14C0.13800.62500.16160.070*0.275 (12)
H14A0.21470.57920.19990.070*0.275 (12)
C14B0.3361 (17)0.5483 (4)0.091 (2)0.123 (6)0.725 (12)
H14E0.29380.5485−0.00260.184*0.725 (12)
H14F0.27930.56740.15290.184*0.725 (12)
H14D0.33590.51810.12800.184*0.725 (12)
C150.4767 (9)0.6062 (2)0.0647 (6)0.0674 (7)
C160.6251 (9)0.6243 (2)0.0738 (7)0.0674 (7)
H160.64380.62990.17520.081*
C170.6498 (9)0.6692 (2)−0.0017 (7)0.0674 (7)
H17A0.65820.6638−0.10340.081*
H17B0.56460.68830.01370.081*
C180.7826 (9)0.6931 (2)0.0477 (6)0.0674 (7)
C190.7774 (9)0.7261 (2)0.1503 (6)0.0674 (7)
H190.68530.73540.18220.081*
C200.9003 (9)0.7463 (2)0.2091 (7)0.0674 (7)
H200.89020.76860.27830.081*
C211.0373 (9)0.7331 (2)0.1643 (6)0.0674 (7)
H211.12070.74720.20080.081*
C221.0519 (9)0.6990 (2)0.0649 (6)0.0674 (7)
H221.14480.68860.03890.081*
C230.9280 (9)0.6808 (2)0.0052 (7)0.0674 (7)
H230.93910.6594−0.06660.081*
C240.8109 (6)0.56624 (14)0.1212 (4)0.0287 (10)
C250.9113 (5)0.53145 (14)0.0658 (4)0.0284 (10)
C260.9493 (6)0.51816 (16)−0.0702 (4)0.0395 (13)
H260.91240.5315−0.15260.047*
N10.6976 (4)0.60424 (11)0.5186 (4)0.0276 (8)
H10.71270.59230.43640.033*
N20.7346 (5)0.59066 (12)0.0283 (4)0.0378 (10)
H20.74970.5867−0.06140.045*
O10.5160 (5)0.66529 (11)0.4175 (4)0.0507 (10)
O20.6327 (4)0.72365 (11)0.5165 (5)0.0555 (11)
O30.6321 (4)0.59001 (10)0.7462 (3)0.0403 (9)
O4A0.342 (2)0.6223 (6)0.111 (2)0.047 (4)0.275 (12)
O4B0.4741 (16)0.5635 (4)0.0848 (17)0.078 (3)0.725 (12)
O5A0.443 (6)0.5668 (8)0.057 (5)0.078 (3)0.275 (12)
O5B0.3754 (8)0.6338 (3)0.0463 (11)0.070 (2)0.725 (12)
O60.8024 (4)0.57171 (10)0.2509 (3)0.0349 (8)
S10.50000.50000.70005 (14)0.0268 (4)
S21.00000.50000.19249 (14)0.0265 (4)
U11U22U33U12U13U23
C10.063 (4)0.068 (4)0.072 (4)0.008 (3)−0.025 (4)−0.005 (3)
C20.042 (3)0.030 (2)0.037 (2)0.007 (2)0.012 (2)0.0014 (19)
C30.041 (3)0.033 (2)0.027 (2)−0.002 (2)−0.002 (2)−0.0013 (18)
C40.050 (3)0.029 (2)0.022 (2)−0.007 (2)0.000 (2)−0.0004 (17)
C50.033 (3)0.034 (2)0.030 (2)−0.001 (2)0.004 (2)−0.0016 (18)
C60.048 (3)0.051 (3)0.059 (3)0.006 (3)−0.013 (3)−0.030 (3)
C70.073 (4)0.055 (3)0.081 (4)0.031 (3)−0.026 (4)−0.038 (3)
C80.046 (3)0.059 (3)0.060 (3)0.018 (3)−0.018 (3)−0.013 (3)
C90.054 (4)0.052 (3)0.051 (3)0.004 (3)−0.009 (3)−0.020 (3)
C100.053 (3)0.033 (2)0.044 (3)0.003 (2)−0.009 (3)−0.008 (2)
C110.035 (3)0.031 (2)0.018 (2)0.004 (2)−0.0055 (19)0.0008 (16)
C120.041 (3)0.027 (2)0.0163 (19)0.002 (2)0.0030 (19)0.0048 (16)
C130.056 (4)0.035 (2)0.015 (2)−0.012 (2)−0.005 (2)0.0033 (17)
C14A0.034 (7)0.053 (8)0.053 (8)−0.013 (5)0.010 (6)0.002 (6)
C14B0.110 (12)0.068 (7)0.191 (16)−0.018 (7)−0.066 (11)0.014 (8)
C150.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C160.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C170.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C180.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C190.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C200.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C210.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C220.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C230.0996 (18)0.0573 (12)0.0455 (11)0.0261 (13)0.0108 (12)−0.0013 (9)
C240.040 (3)0.026 (2)0.020 (2)−0.002 (2)0.000 (2)−0.0021 (17)
C250.039 (3)0.024 (2)0.022 (2)−0.0018 (19)0.000 (2)0.0001 (16)
C260.069 (4)0.036 (2)0.013 (2)0.008 (2)−0.002 (2)0.0005 (16)
N10.044 (2)0.0221 (16)0.0167 (16)−0.0009 (17)−0.0006 (17)−0.0027 (14)
N20.065 (3)0.0338 (19)0.0141 (16)0.018 (2)−0.0050 (19)−0.0061 (14)
O10.054 (2)0.0389 (18)0.059 (2)0.0089 (18)−0.026 (2)−0.0115 (16)
O20.057 (3)0.0316 (19)0.078 (3)0.0055 (18)−0.012 (2)−0.0154 (17)
O30.066 (2)0.0395 (17)0.0156 (15)−0.0111 (17)−0.0077 (16)−0.0038 (13)
O4A0.034 (7)0.053 (8)0.053 (8)−0.013 (5)0.010 (6)0.002 (6)
O4B0.047 (8)0.115 (4)0.072 (8)0.011 (4)−0.005 (4)0.048 (4)
O5A0.047 (8)0.115 (4)0.072 (8)0.011 (4)−0.005 (4)0.048 (4)
O5B0.041 (4)0.070 (5)0.100 (6)0.020 (4)−0.026 (4)−0.014 (4)
O60.049 (2)0.0383 (16)0.0170 (15)0.0106 (16)−0.0037 (14)−0.0017 (12)
S10.0425 (9)0.0263 (7)0.0118 (6)0.0010 (7)0.0000.000
S20.0384 (8)0.0268 (7)0.0144 (6)0.0011 (7)0.0000.000
C1—O11.447 (7)C14B—H14E0.9600
C1—H1A0.9600C14B—H14F0.9600
C1—H1B0.9600C14B—H14D0.9600
C1—H1C0.9600C15—O5A1.21 (2)
C2—O21.196 (5)C15—O5B1.243 (9)
C2—O11.337 (6)C15—O4B1.280 (12)
C2—C31.515 (7)C15—O4A1.38 (2)
C3—N11.449 (6)C15—C161.453 (11)
C3—C41.516 (7)C16—N21.471 (7)
C3—H30.9800C16—C171.523 (9)
C4—C51.530 (7)C16—H160.9800
C4—H4B0.9700C17—C181.472 (10)
C4—H4A0.9700C17—H17A0.9700
C5—C101.366 (7)C17—H17B0.9700
C5—C61.386 (7)C18—C191.373 (8)
C6—C71.404 (9)C18—C231.426 (10)
C6—H60.9300C19—C201.381 (10)
C7—C81.376 (8)C19—H190.9300
C7—H70.9300C20—C211.369 (10)
C8—C91.360 (8)C20—H200.9300
C8—H80.9300C21—C221.381 (9)
C9—C101.395 (8)C21—H210.9300
C9—H90.9300C22—C231.367 (10)
C10—H100.9300C22—H220.9300
C11—O31.229 (5)C23—H230.9300
C11—N11.332 (6)C24—O61.229 (5)
C11—C121.502 (6)C24—N21.328 (6)
C12—C131.357 (6)C24—C251.471 (6)
C12—S11.719 (4)C25—C261.378 (6)
C13—C13i1.383 (9)C25—S21.711 (4)
C13—H130.9300C26—C26ii1.417 (10)
C14A—O4A1.37 (3)C26—H260.9300
C14A—H14B0.9600N1—H10.8600
C14A—H14C0.9600N2—H20.8600
C14A—H14A0.9600S1—C12i1.719 (4)
C14B—O4B1.33 (2)S2—C25ii1.711 (4)
O1—C1—H1A109.5O5A—C15—O4A97 (3)
O1—C1—H1B109.5O4B—C15—O4A106.1 (13)
H1A—C1—H1B109.5O5A—C15—C16126 (3)
O1—C1—H1C109.5O5B—C15—C16116.8 (7)
H1A—C1—H1C109.5O4B—C15—C16112.0 (8)
H1B—C1—H1C109.5O4A—C15—C16132.5 (9)
O2—C2—O1123.4 (5)C15—C16—N2111.0 (5)
O2—C2—C3123.0 (5)C15—C16—C17115.6 (6)
O1—C2—C3113.6 (4)N2—C16—C17110.9 (6)
N1—C3—C2112.9 (4)C15—C16—H16106.2
N1—C3—C4111.6 (4)N2—C16—H16106.2
C2—C3—C4110.2 (4)C17—C16—H16106.2
N1—C3—H3107.3C18—C17—C16113.2 (6)
C2—C3—H3107.3C18—C17—H17A108.9
C4—C3—H3107.3C16—C17—H17A108.9
C3—C4—C5112.9 (4)C18—C17—H17B108.9
C3—C4—H4B109.0C16—C17—H17B108.9
C5—C4—H4B109.0H17A—C17—H17B107.7
C3—C4—H4A109.0C19—C18—C23114.1 (7)
C5—C4—H4A109.0C19—C18—C17122.4 (7)
H4B—C4—H4A107.8C23—C18—C17123.2 (5)
C10—C5—C6119.0 (5)C18—C19—C20124.2 (7)
C10—C5—C4120.3 (4)C18—C19—H19117.9
C6—C5—C4120.6 (4)C20—C19—H19117.9
C5—C6—C7119.4 (5)C21—C20—C19119.1 (6)
C5—C6—H6120.3C21—C20—H20120.4
C7—C6—H6120.3C19—C20—H20120.4
C8—C7—C6120.5 (5)C20—C21—C22120.2 (7)
C8—C7—H7119.7C20—C21—H21119.9
C6—C7—H7119.7C22—C21—H21119.9
C9—C8—C7119.7 (5)C23—C22—C21119.0 (7)
C9—C8—H8120.2C23—C22—H22120.5
C7—C8—H8120.2C21—C22—H22120.5
C8—C9—C10120.0 (5)C22—C23—C18123.2 (6)
C8—C9—H9120.0C22—C23—H23118.4
C10—C9—H9120.0C18—C23—H23118.4
C5—C10—C9121.3 (4)O6—C24—N2123.0 (4)
C5—C10—H10119.3O6—C24—C25118.7 (4)
C9—C10—H10119.3N2—C24—C25118.3 (4)
O3—C11—N1123.3 (4)C26—C25—C24133.0 (4)
O3—C11—C12120.7 (4)C26—C25—S2111.7 (3)
N1—C11—C12115.9 (4)C24—C25—S2115.4 (3)
C13—C12—C11130.6 (4)C25—C26—C26ii112.3 (3)
C13—C12—S1112.0 (3)C25—C26—H26123.8
C11—C12—S1117.2 (3)C26ii—C26—H26123.8
C12—C13—C13i112.9 (3)C11—N1—C3123.2 (4)
C12—C13—H13123.6C11—N1—H1118.4
C13i—C13—H13123.6C3—N1—H1118.4
O4A—C14A—H14B109.5C24—N2—C16122.1 (4)
O4A—C14A—H14C109.5C24—N2—H2119.0
H14B—C14A—H14C109.5C16—N2—H2119.0
O4A—C14A—H14A109.5C2—O1—C1116.6 (4)
H14B—C14A—H14A109.5C14A—O4A—C15133.5 (17)
H14C—C14A—H14A109.5C15—O4B—C14B111.0 (12)
O5A—C15—O5B116 (2)C12i—S1—C1290.3 (3)
O5B—C15—O4B131.1 (11)C25ii—S2—C2592.1 (3)
O2—C2—C3—N1169.7 (4)C17—C18—C19—C20173.7 (6)
O1—C2—C3—N1−9.4 (6)C18—C19—C20—C21−0.1 (10)
O2—C2—C3—C4−64.8 (6)C19—C20—C21—C22−2.1 (9)
O1—C2—C3—C4116.1 (4)C20—C21—C22—C234.4 (9)
N1—C3—C4—C5−71.2 (4)C21—C22—C23—C18−4.6 (10)
C2—C3—C4—C5162.7 (4)C19—C18—C23—C222.4 (9)
C3—C4—C5—C10−90.3 (5)C17—C18—C23—C22−171.2 (6)
C3—C4—C5—C685.1 (6)O6—C24—C25—C26−177.5 (5)
C10—C5—C6—C7−1.7 (9)N2—C24—C25—C261.8 (8)
C4—C5—C6—C7−177.2 (6)O6—C24—C25—S23.2 (6)
C5—C6—C7—C82.2 (11)N2—C24—C25—S2−177.5 (4)
C6—C7—C8—C9−2.4 (11)C24—C25—C26—C26ii−179.0 (5)
C7—C8—C9—C102.2 (10)S2—C25—C26—C26ii0.4 (8)
C6—C5—C10—C91.5 (8)O3—C11—N1—C3−13.2 (7)
C4—C5—C10—C9177.0 (5)C12—C11—N1—C3167.1 (4)
C8—C9—C10—C5−1.8 (9)C2—C3—N1—C11−95.6 (5)
O3—C11—C12—C13168.5 (5)C4—C3—N1—C11139.6 (4)
N1—C11—C12—C13−11.8 (8)O6—C24—N2—C16−4.5 (8)
O3—C11—C12—S1−5.5 (6)C25—C24—N2—C16176.3 (5)
N1—C11—C12—S1174.2 (3)C15—C16—N2—C24−99.5 (6)
C11—C12—C13—C13i−175.3 (5)C17—C16—N2—C24130.5 (6)
S1—C12—C13—C13i−1.0 (8)O2—C2—O1—C1−3.0 (8)
O5A—C15—C16—N218 (3)C3—C2—O1—C1176.1 (5)
O5B—C15—C16—N2−153.2 (7)O5A—C15—O4A—C14A−6(3)
O4B—C15—C16—N230.1 (11)O5B—C15—O4A—C14A122 (3)
O4A—C15—C16—N2171.0 (12)O4B—C15—O4A—C14A−22 (3)
O5A—C15—C16—C17145 (3)C16—C15—O4A—C14A−164.4 (18)
O5B—C15—C16—C17−25.7 (9)O5A—C15—O4B—C14B−41 (11)
O4B—C15—C16—C17157.6 (10)O5B—C15—O4B—C14B−3(2)
O4A—C15—C16—C17−61.5 (14)O4A—C15—O4B—C14B22.3 (18)
C15—C16—C17—C18161.2 (5)C16—C15—O4B—C14B173.4 (12)
N2—C16—C17—C18−71.2 (7)C13—C12—S1—C12i0.4 (3)
C16—C17—C18—C19−96.0 (7)C11—C12—S1—C12i175.5 (5)
C16—C17—C18—C2377.1 (8)C26—C25—S2—C25ii−0.1 (3)
C23—C18—C19—C200.0 (9)C24—C25—S2—C25ii179.3 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1···O60.862.012.853 (5)164.
N2—H2···O3iii0.862.102.803 (5)139.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O60.862.012.853 (5)164
N2—H2⋯O3i0.862.102.803 (5)139

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
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Authors:  Guang-Ming Xia; Mu-Wei Ji; Ping Lu; Guo-Xin Sun; Wen-Fang Xu
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1.  Dimethyl 3,3'-diphenyl-2,2'-[(S)-thio-phene-2,5-diylbis(carbonyl-aza-nedi-yl)]dipropano-ate tetra-hydro-furan monosolvate.

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