Literature DB >> 21588720

Ethyl 2-isopropyl-amino-6-methyl-8-oxo-3-phenyl-3H,8H-furo[2,3-d][1,2,4]triazolo[1,5-a]pyrimidine-7-carboxyl-ate.

Qing Li, Xian-Yu Wang, Cheng-Ming Qin, Yan-Lin Wang.   

Abstract

In the title compound, C(20)H(21)N(5)O(4), the ring system containing the three fused rings is essentially planar (r.m.s. deviation for all 12 non-H atoms = 0.041 Å). The phenyl ring makes a dihedral angle of 54.41 (6)° with this ring system. The isopropyl group is disordered over two positions, with site-occupancy factors of 0.753 (9) and 0.247 (9). The structure is mainly stabilized by weak inter-molecular N-H⋯O and intra-molecular C-H⋯O hydrogen-bonding inter-actions and π-π inter-actions, with inter-planar distances of 3.415 (1) Å between adjacent furan ring centroids and 3.420 (1) Å between the benzene and pyrimidinone rings.

Entities:  

Year:  2010        PMID: 21588720      PMCID: PMC3007932          DOI: 10.1107/S1600536810032654

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of other fused pyrimidinone derivatives and related literature, see: Ding et al. (2004 ▶); Hu et al. (2005 ▶, 2006 ▶, 2007 ▶, 2008 ▶).

Experimental

Crystal data

C20H21N5O4 M = 395.42 Orthorhombic, a = 19.9810 (11) Å b = 37.3673 (19) Å c = 10.7181 (6) Å V = 8002.5 (7) Å3 Z = 16 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.981, T max = 0.991 21970 measured reflections 2074 independent reflections 1883 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.109 S = 1.09 2074 reflections 290 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.11 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032654/bt5323sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032654/bt5323Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N5O4F(000) = 3328
Mr = 395.42Dx = 1.313 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 3861 reflections
a = 19.9810 (11) Åθ = 2.2–20.8°
b = 37.3673 (19) ŵ = 0.09 mm1
c = 10.7181 (6) ÅT = 295 K
V = 8002.5 (7) Å3Block, purple
Z = 160.20 × 0.20 × 0.10 mm
Bruker SMART 4K CCD area-detector diffractometer2074 independent reflections
Radiation source: fine-focus sealed tube1883 reflections with I > 2σ(I)
graphiteRint = 0.042
φ and ω scansθmax = 27.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −25→24
Tmin = 0.981, Tmax = 0.991k = −44→47
21970 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0601P)2 + 2.4148P] where P = (Fo2 + 2Fc2)/3
2074 reflections(Δ/σ)max < 0.001
290 parametersΔρmax = 0.14 e Å3
5 restraintsΔρmin = −0.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.25088 (16)0.07862 (8)0.2745 (4)0.0618 (8)
H10.26340.06940.19740.074*
C20.29491 (17)0.07774 (9)0.3748 (4)0.0743 (11)
H20.33780.06850.36400.089*
C30.2759 (2)0.09026 (10)0.4890 (4)0.0829 (12)
H30.30520.08890.55620.099*
C40.2140 (2)0.10476 (12)0.5044 (4)0.0831 (11)
H40.20110.11330.58220.100*
C50.17048 (18)0.10680 (10)0.4059 (3)0.0678 (9)
H50.12870.11730.41670.081*
C60.18834 (15)0.09340 (8)0.2912 (3)0.0520 (7)
C70.07894 (14)0.07677 (7)0.1978 (3)0.0487 (6)
C80.14928 (15)0.10258 (7)0.0675 (3)0.0517 (7)
C90.21415 (19)0.12881 (12)−0.1012 (4)0.0790 (11)
H9A0.19730.1093−0.15370.095*0.76
H9B0.17200.1295−0.14790.095*0.24
C100.1741 (3)0.16260 (18)−0.1310 (7)0.107 (2)0.76
H10A0.12760.1584−0.11490.160*0.76
H10B0.18010.1687−0.21730.160*0.76
H10C0.18960.1819−0.07960.160*0.76
C110.2851 (3)0.1340 (3)−0.1290 (7)0.137 (3)0.76
H11A0.30320.1519−0.07450.205*0.76
H11B0.29010.1416−0.21410.205*0.76
H11C0.30860.1118−0.11680.205*0.76
C11'0.2599 (11)0.1007 (4)−0.153 (2)0.125 (8)0.24
H11D0.29960.0995−0.10230.188*0.24
H11E0.27180.1067−0.23670.188*0.24
H11F0.23760.0780−0.15140.188*0.24
C10'0.2513 (12)0.1649 (3)−0.110 (3)0.187 (17)0.24
H10D0.22120.1840−0.08810.281*0.24
H10E0.26740.1684−0.19320.281*0.24
H10F0.28850.1649−0.05280.281*0.24
C12−0.00778 (15)0.06210 (8)0.0432 (3)0.0575 (8)
C13−0.03791 (14)0.04496 (8)0.1483 (3)0.0592 (8)
C14−0.00908 (14)0.04888 (8)0.2641 (3)0.0549 (7)
C15−0.09993 (16)0.02527 (8)0.1723 (4)0.0680 (10)
C16−0.10362 (17)0.02052 (9)0.2962 (4)0.0715 (10)
C17−0.1520 (2)0.00305 (13)0.3833 (5)0.0982 (14)
H17A−0.1864−0.00870.33600.147*
H17B−0.17190.02090.43610.147*
H17C−0.1289−0.01420.43360.147*
C18−0.1456 (2)0.00781 (11)0.0816 (5)0.0832 (12)
C19−0.1552 (3)−0.01350 (12)−0.1254 (6)0.1117 (18)
H19A−0.19460.0006−0.14520.134*
H19B−0.1697−0.0370−0.09760.134*
C20−0.1128 (4)−0.0169 (2)−0.2349 (7)0.158 (3)
H20A−0.09850.0064−0.26140.237*
H20B−0.1375−0.0282−0.30090.237*
H20C−0.0743−0.0312−0.21470.237*
N10.14054 (11)0.09293 (6)0.1915 (2)0.0506 (6)
N20.05524 (11)0.07635 (6)0.0793 (2)0.0511 (6)
N30.09879 (12)0.09351 (6)−0.0029 (2)0.0538 (6)
N40.20563 (14)0.11862 (8)0.0286 (3)0.0636 (7)
H4A0.2249 (17)0.1327 (8)0.081 (3)0.076*
N50.04897 (13)0.06436 (7)0.2978 (2)0.0568 (6)
O1−0.02832 (11)0.06660 (6)−0.0623 (2)0.0728 (7)
O2−0.04849 (11)0.03475 (6)0.3546 (2)0.0695 (6)
O3−0.20042 (15)−0.00291 (9)0.1061 (4)0.1254 (13)
O4−0.11678 (14)0.00387 (7)−0.0285 (3)0.0887 (9)
U11U22U33U12U13U23
C10.0516 (17)0.0511 (16)0.083 (2)−0.0037 (13)−0.0061 (16)0.0058 (16)
C20.0521 (19)0.0555 (18)0.115 (3)−0.0055 (15)−0.021 (2)0.016 (2)
C30.088 (3)0.073 (2)0.088 (3)−0.015 (2)−0.043 (2)0.015 (2)
C40.094 (3)0.091 (3)0.065 (2)−0.010 (2)−0.020 (2)0.0011 (19)
C50.063 (2)0.079 (2)0.062 (2)−0.0057 (16)−0.0053 (17)0.0026 (16)
C60.0479 (16)0.0494 (15)0.0587 (17)−0.0094 (13)−0.0064 (13)0.0071 (13)
C70.0428 (15)0.0493 (15)0.0540 (16)−0.0008 (12)−0.0032 (14)−0.0011 (13)
C80.0534 (17)0.0475 (15)0.0542 (17)0.0004 (13)0.0045 (14)−0.0061 (13)
C90.081 (2)0.098 (3)0.0576 (19)−0.019 (2)0.0117 (18)−0.0011 (19)
C100.120 (5)0.113 (5)0.088 (4)−0.002 (4)0.018 (4)0.035 (4)
C110.089 (4)0.226 (10)0.096 (5)−0.018 (6)0.039 (4)0.026 (6)
C11'0.18 (2)0.093 (14)0.105 (15)−0.018 (15)0.062 (16)−0.013 (12)
C10'0.26 (4)0.110 (17)0.19 (3)0.06 (2)0.16 (3)0.081 (19)
C120.0508 (17)0.0457 (16)0.076 (2)0.0031 (13)−0.0168 (16)−0.0029 (15)
C130.0449 (17)0.0515 (17)0.081 (2)−0.0002 (13)−0.0078 (16)−0.0001 (16)
C140.0446 (15)0.0510 (16)0.0692 (19)−0.0032 (13)0.0058 (14)−0.0018 (14)
C150.0450 (18)0.0517 (18)0.107 (3)−0.0007 (14)−0.0087 (18)0.0031 (18)
C160.0485 (18)0.0585 (19)0.108 (3)−0.0056 (14)0.0049 (18)−0.0043 (19)
C170.074 (3)0.091 (3)0.130 (4)−0.023 (2)0.029 (3)−0.012 (3)
C180.058 (2)0.061 (2)0.131 (4)−0.0096 (17)−0.028 (2)0.021 (2)
C190.120 (4)0.063 (2)0.152 (5)−0.015 (2)−0.081 (4)0.011 (3)
C200.194 (7)0.151 (5)0.129 (5)−0.003 (5)−0.057 (5)−0.036 (5)
N10.0410 (12)0.0554 (13)0.0552 (13)−0.0055 (10)−0.0011 (11)0.0000 (11)
N20.0470 (13)0.0505 (13)0.0558 (14)−0.0007 (10)−0.0048 (11)−0.0009 (11)
N30.0586 (15)0.0519 (13)0.0509 (13)−0.0039 (11)−0.0029 (12)−0.0036 (11)
N40.0601 (16)0.0739 (17)0.0566 (16)−0.0145 (14)0.0082 (13)−0.0032 (13)
N50.0484 (14)0.0619 (15)0.0601 (14)−0.0057 (11)0.0008 (12)−0.0012 (12)
O10.0743 (15)0.0658 (13)0.0783 (16)−0.0078 (11)−0.0312 (13)0.0074 (12)
O20.0551 (13)0.0702 (14)0.0832 (15)−0.0106 (11)0.0130 (12)−0.0042 (12)
O30.0740 (18)0.139 (3)0.163 (3)−0.0538 (19)−0.031 (2)0.036 (3)
O40.0692 (16)0.0697 (16)0.127 (3)−0.0056 (13)−0.0370 (18)−0.0125 (16)
C1—C61.378 (4)C11'—H11D0.9600
C1—C21.389 (5)C11'—H11E0.9600
C1—H10.9300C11'—H11F0.9600
C2—C31.364 (7)C10'—H10D0.9600
C2—H20.9300C10'—H10E0.9600
C3—C41.361 (6)C10'—H10F0.9600
C3—H30.9300C12—O11.215 (4)
C4—C51.370 (5)C12—N21.421 (4)
C4—H40.9300C12—C131.429 (5)
C5—C61.374 (5)C13—C141.376 (5)
C5—H50.9300C13—C151.464 (5)
C6—N11.434 (4)C14—N51.345 (4)
C7—N51.312 (4)C14—O21.357 (4)
C7—N21.355 (4)C15—C161.342 (6)
C7—N11.373 (3)C15—C181.483 (6)
C8—N31.305 (4)C16—O21.374 (4)
C8—N41.342 (4)C16—C171.494 (6)
C8—N11.387 (4)C17—H17A0.9600
C9—N41.452 (5)C17—H17B0.9600
C9—C111.461 (7)C17—H17C0.9600
C9—C11'1.496 (11)C18—O31.196 (5)
C9—C101.528 (7)C18—O41.321 (6)
C9—C10'1.543 (11)C19—O41.446 (5)
C9—H9A0.9800C19—C201.454 (9)
C9—H9B0.9800C19—H19A0.9700
C10—H9B1.2497C19—H19B0.9700
C10—H10A0.9600C20—H20A0.9600
C10—H10B0.9600C20—H20B0.9600
C10—H10C0.9600C20—H20C0.9600
C11—H11A0.9600N2—N31.394 (3)
C11—H11B0.9600N4—H4A0.86 (3)
C11—H11C0.9600
C6—C1—C2118.9 (3)C9—C10'—H10E109.5
C6—C1—H1120.6H10D—C10'—H10E109.5
C2—C1—H1120.6C9—C10'—H10F109.5
C3—C2—C1120.7 (3)H10D—C10'—H10F109.5
C3—C2—H2119.7H10E—C10'—H10F109.5
C1—C2—H2119.7O1—C12—N2120.1 (3)
C4—C3—C2119.9 (4)O1—C12—C13130.8 (3)
C4—C3—H3120.1N2—C12—C13109.1 (3)
C2—C3—H3120.1C14—C13—C12119.1 (3)
C3—C4—C5120.4 (4)C14—C13—C15104.5 (3)
C3—C4—H4119.8C12—C13—C15136.1 (3)
C5—C4—H4119.8N5—C14—O2118.4 (3)
C4—C5—C6120.3 (4)N5—C14—C13130.4 (3)
C4—C5—H5119.9O2—C14—C13111.1 (3)
C6—C5—H5119.9C16—C15—C13106.7 (3)
C5—C6—C1119.9 (3)C16—C15—C18123.8 (4)
C5—C6—N1119.9 (3)C13—C15—C18128.8 (4)
C1—C6—N1120.1 (3)C15—C16—O2110.9 (3)
N5—C7—N2127.0 (3)C15—C16—C17135.3 (4)
N5—C7—N1127.2 (3)O2—C16—C17113.8 (4)
N2—C7—N1105.8 (2)C16—C17—H17A109.5
N3—C8—N4125.8 (3)C16—C17—H17B109.5
N3—C8—N1112.9 (2)H17A—C17—H17B109.5
N4—C8—N1121.3 (3)C16—C17—H17C109.5
N4—C9—C11110.1 (4)H17A—C17—H17C109.5
N4—C9—C11'103.9 (10)H17B—C17—H17C109.5
N4—C9—C10110.8 (4)O3—C18—O4123.9 (5)
C11—C9—C10110.8 (6)O3—C18—C15124.5 (5)
C11'—C9—C10145.3 (10)O4—C18—C15111.5 (3)
N4—C9—C10'110.0 (11)O4—C19—C20108.0 (5)
C11'—C9—C10'107.3 (9)O4—C19—H19A110.1
N4—C9—H9A108.3C20—C19—H19A110.1
C11—C9—H9A108.3O4—C19—H19B110.1
C10—C9—H9A108.3C20—C19—H19B110.1
C10'—C9—H9A141.5H19A—C19—H19B108.4
N4—C9—H9B113.3C19—C20—H20A109.5
C11—C9—H9B136.6C19—C20—H20B109.5
C11'—C9—H9B110.9H20A—C20—H20B109.5
C10'—C9—H9B111.1C19—C20—H20C109.5
C9—C10—H10A109.5H20A—C20—H20C109.5
C9—C10—H10B109.5H20B—C20—H20C109.5
H9B—C10—H10B95.8C7—N1—C8105.9 (2)
C9—C10—H10C109.5C7—N1—C6124.5 (2)
H9B—C10—H10C147.0C8—N1—C6128.8 (2)
C9—C11—H11A109.5C7—N2—N3111.6 (2)
C9—C11—H11B109.5C7—N2—C12124.7 (3)
C9—C11—H11C109.5N3—N2—C12123.6 (2)
C9—C11'—H11D109.5C8—N3—N2103.7 (2)
C9—C11'—H11E109.5C8—N4—C9120.9 (3)
H11D—C11'—H11E109.5C8—N4—H4A116 (3)
C9—C11'—H11F109.5C9—N4—H4A114 (3)
H11D—C11'—H11F109.5C7—N5—C14109.0 (3)
H11E—C11'—H11F109.5C14—O2—C16106.8 (3)
C9—C10'—H10D109.5C18—O4—C19117.4 (4)
C6—C1—C2—C32.1 (5)N4—C8—N1—C6−8.7 (5)
C1—C2—C3—C4−2.0 (5)C5—C6—N1—C7−56.1 (4)
C2—C3—C4—C50.2 (6)C1—C6—N1—C7120.2 (3)
C3—C4—C5—C61.6 (6)C5—C6—N1—C8135.5 (3)
C4—C5—C6—C1−1.5 (5)C1—C6—N1—C8−48.2 (4)
C4—C5—C6—N1174.8 (3)N5—C7—N2—N3176.9 (3)
C2—C1—C6—C5−0.3 (5)N1—C7—N2—N3−3.0 (3)
C2—C1—C6—N1−176.6 (3)N5—C7—N2—C120.2 (5)
O1—C12—C13—C14−168.6 (3)N1—C7—N2—C12−179.6 (2)
N2—C12—C13—C148.9 (4)O1—C12—N2—C7171.4 (3)
O1—C12—C13—C153.6 (6)C13—C12—N2—C7−6.5 (4)
N2—C12—C13—C15−178.8 (3)O1—C12—N2—N3−4.9 (4)
C12—C13—C14—N5−6.7 (5)C13—C12—N2—N3177.2 (2)
C15—C13—C14—N5178.9 (3)N4—C8—N3—N2177.0 (3)
C12—C13—C14—O2172.3 (3)N1—C8—N3—N2−1.2 (3)
C15—C13—C14—O2−2.2 (3)C7—N2—N3—C82.6 (3)
C14—C13—C15—C162.1 (4)C12—N2—N3—C8179.3 (2)
C12—C13—C15—C16−170.9 (4)N3—C8—N4—C92.3 (5)
C14—C13—C15—C18−168.0 (3)N1—C8—N4—C9−179.6 (3)
C12—C13—C15—C1819.0 (6)C11—C9—N4—C8−160.5 (6)
C13—C15—C16—O2−1.3 (4)C11'—C9—N4—C8−103.2 (11)
C18—C15—C16—O2169.4 (3)C10—C9—N4—C876.5 (5)
C13—C15—C16—C17−179.8 (4)C10'—C9—N4—C8142.2 (10)
C18—C15—C16—C17−9.1 (7)N2—C7—N5—C143.4 (4)
C16—C15—C18—O323.7 (6)N1—C7—N5—C14−176.8 (3)
C13—C15—C18—O3−167.7 (4)O2—C14—N5—C7−179.0 (3)
C16—C15—C18—O4−153.1 (4)C13—C14—N5—C7−0.1 (5)
C13—C15—C18—O415.5 (5)N5—C14—O2—C16−179.5 (3)
N5—C7—N1—C8−177.7 (3)C13—C14—O2—C161.4 (3)
N2—C7—N1—C82.1 (3)C15—C16—O2—C140.0 (4)
N5—C7—N1—C611.6 (5)C17—C16—O2—C14178.9 (3)
N2—C7—N1—C6−168.6 (2)O3—C18—O4—C192.0 (6)
N3—C8—N1—C7−0.5 (3)C15—C18—O4—C19178.8 (3)
N4—C8—N1—C7−178.8 (3)C20—C19—O4—C18−176.6 (4)
N3—C8—N1—C6169.5 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O1i0.86 (3)2.21 (2)2.978 (4)148 (3)
C17—H17A···O30.962.493.132 (7)124.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯O1i0.86 (3)2.21 (2)2.978 (4)148 (3)
C17—H17A⋯O30.962.493.132 (7)124

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethyl 2-[1-(4-chloro-phen-yl)-2,5-dioxo-1,2,3,5-tetra-hydro-imidazo[1',2':1,2]pyrimidino[5,4-b][1]benzofuran-3-yl]acetate.

Authors:  Yang-Gen Hu; Zheng-Rong Zhu; Yu-Lu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

3.  Application of bis(iminophosphorane) in heterocyclic synthesis: new entries to symmetrically or unsymmetrically substituted thieno[2,3-d:5,4-d']dipyrimidine-4,5(3H,6H)-diones.

Authors:  Ming-Wu Ding; Sheng-Zhen Xu; Jun-Feng Zhao
Journal:  J Org Chem       Date:  2004-11-26       Impact factor: 4.354

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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