Literature DB >> 21588701

(E)-1-[(1,3-Dioxan-4-yl)meth-yl]-2-(nitro-methyl-idene)imidazolidine.

Zhongzhen Tian, Haijun Dong, Dongmei Li, Gaolei Wang.   

Abstract

In the title compound, C(9)H(15)N(3)O(4), the 1,3-dioxane ring displays a chair conformation and the five-membered ring is close to planar (r.m.s. deviation = 0.054 Å). An intra-molecular N-H⋯O hydrogen bond to one of the nitro-group O atoms generates an S(6) ring. In the crystal, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into C(6) chains propagating in [010] and a C-H⋯O link also occurs.

Entities:  

Year:  2010        PMID: 21588701      PMCID: PMC3007992          DOI: 10.1107/S1600536810032691

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see Tian et al. (2009 ▶). For background to neonicotinoid insecticides, see Mori et al. (2001 ▶); Ohno et al. (2009 ▶); Jeschke & Nauen (2008 ▶); Kagabu (1997 ▶); Tian et al. (2007 ▶).

Experimental

Crystal data

C9H15N3O4 M = 229.24 Monoclinic, a = 5.0138 (4) Å b = 9.8092 (9) Å c = 21.7162 (18) Å V = 1068.03 (16) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.42 × 0.26 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.954, T max = 0.982 5866 measured reflections 1933 independent reflections 1395 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.174 S = 1.10 1933 reflections 145 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032691/hb5607sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032691/hb5607Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H15N3O4F(000) = 488
Mr = 229.24Dx = 1.426 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2831 reflections
a = 5.0138 (4) Åθ = 3.5–28.7°
b = 9.8092 (9) ŵ = 0.11 mm1
c = 21.7162 (18) ÅT = 296 K
β = 90°Prism, colourless
V = 1068.03 (16) Å30.42 × 0.26 × 0.16 mm
Z = 4
Bruker APEXII CCD diffractometer1933 independent reflections
Radiation source: fine-focus sealed tube1395 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 25.4°, θmin = 3.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −6→6
Tmin = 0.954, Tmax = 0.982k = −11→11
5866 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.174H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.1126P)2] where P = (Fo2 + 2Fc2)/3
1933 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.7955 (3)0.71286 (16)0.23056 (8)0.0532 (5)
N10.7422 (4)0.58813 (19)0.22961 (9)0.0420 (5)
C20.3945 (4)0.6124 (2)0.30617 (10)0.0343 (5)
O30.2691 (4)0.39753 (16)0.44986 (7)0.0536 (5)
N20.4042 (4)0.74655 (19)0.31417 (9)0.0435 (5)
H20.50380.80030.29300.052*
C10.5501 (4)0.5344 (2)0.26581 (10)0.0390 (6)
H10.51960.44090.26380.047*
N30.2104 (4)0.55718 (19)0.34370 (8)0.0421 (5)
O10.8720 (4)0.51016 (18)0.19406 (9)0.0640 (6)
C50.1287 (5)0.4153 (2)0.34624 (11)0.0432 (6)
H5A0.15140.37530.30570.052*
H5B−0.05970.41150.35630.052*
C60.2786 (5)0.3314 (2)0.39185 (10)0.0406 (6)
H60.46530.32680.37870.049*
O40.2921 (5)0.1954 (2)0.50513 (9)0.0741 (7)
C70.1743 (5)0.1882 (2)0.39737 (11)0.0453 (6)
H7A0.21090.13870.35960.054*
H7B−0.01750.19040.40320.054*
C40.0734 (5)0.6627 (3)0.37948 (11)0.0474 (6)
H4B0.08350.64380.42330.057*
H4A−0.11250.66990.36750.057*
C30.2257 (5)0.7920 (2)0.36326 (11)0.0507 (7)
H3A0.10610.86290.34880.061*
H3B0.32550.82580.39840.061*
C90.4109 (7)0.3220 (3)0.49462 (13)0.0653 (8)
H9A0.59300.30860.48080.078*
H9B0.41630.37310.53280.078*
C80.3037 (7)0.1152 (3)0.45115 (13)0.0651 (8)
H8B0.21320.02930.45830.078*
H8A0.48850.09560.44130.078*
U11U22U33U12U13U23
O20.0554 (11)0.0286 (10)0.0756 (13)−0.0030 (7)0.0114 (9)0.0037 (8)
N10.0450 (11)0.0278 (11)0.0533 (12)0.0051 (8)0.0010 (9)0.0052 (9)
C20.0377 (11)0.0255 (12)0.0397 (12)0.0020 (9)−0.0111 (9)0.0038 (9)
O30.0719 (11)0.0445 (11)0.0443 (10)−0.0009 (9)−0.0041 (8)−0.0026 (8)
N20.0474 (11)0.0262 (10)0.0569 (12)0.0006 (8)0.0004 (9)0.0001 (9)
C10.0458 (13)0.0261 (12)0.0451 (13)−0.0020 (9)−0.0025 (10)0.0019 (10)
N30.0524 (12)0.0317 (11)0.0423 (11)−0.0025 (8)0.0010 (9)0.0015 (8)
O10.0772 (13)0.0398 (11)0.0750 (13)0.0116 (9)0.0302 (10)0.0017 (10)
C50.0450 (13)0.0410 (14)0.0437 (13)−0.0091 (11)−0.0063 (10)0.0035 (10)
C60.0441 (12)0.0376 (13)0.0399 (12)−0.0056 (10)−0.0015 (9)0.0002 (10)
O40.1233 (19)0.0549 (12)0.0441 (10)−0.0022 (12)0.0030 (11)0.0089 (9)
C70.0536 (14)0.0350 (13)0.0471 (14)−0.0038 (10)0.0041 (11)−0.0019 (10)
C40.0462 (13)0.0482 (15)0.0477 (13)0.0052 (11)−0.0027 (10)−0.0031 (12)
C30.0677 (17)0.0349 (14)0.0494 (14)0.0088 (12)−0.0027 (12)−0.0024 (11)
C90.095 (2)0.0565 (18)0.0446 (15)0.0001 (15)−0.0174 (14)0.0038 (13)
C80.096 (2)0.0411 (16)0.0584 (17)0.0051 (15)0.0003 (15)0.0049 (13)
O2—N11.253 (2)C6—H60.9800
N1—C11.350 (3)C6—C71.504 (3)
N1—O11.267 (2)O4—C91.396 (4)
C2—N21.329 (3)O4—C81.413 (3)
C2—C11.401 (3)C7—H7A0.9700
C2—N31.345 (3)C7—H7B0.9700
O3—C61.418 (3)C7—C81.516 (4)
O3—C91.414 (3)C4—H4B0.9700
N2—H20.8600C4—H4A0.9700
N2—C31.462 (3)C4—C31.522 (4)
C1—H10.9300C3—H3A0.9700
N3—C51.452 (3)C3—H3B0.9700
N3—C41.465 (3)C9—H9A0.9700
C5—H5A0.9700C9—H9B0.9700
C5—H5B0.9700C8—H8B0.9700
C5—C61.491 (3)C8—H8A0.9700
O2—N1—C1121.61 (19)H5A—C5—H5B107.6
O2—N1—O1119.35 (19)C6—C5—H5A108.7
N1—C1—C2123.2 (2)C6—C5—H5B108.7
N1—C1—H1118.4C6—C7—H7A109.5
C2—N2—H2124.0C6—C7—H7B109.5
C2—N2—C3112.0 (2)C6—C7—C8110.7 (2)
C2—C1—H1118.4O4—C9—O3111.3 (2)
C2—N3—C5127.03 (19)O4—C9—H9A109.4
C2—N3—C4111.03 (19)O4—C9—H9B109.4
O3—C6—C5108.72 (19)O4—C8—C7111.0 (2)
O3—C6—H6108.2O4—C8—H8B109.4
O3—C6—C7110.17 (18)O4—C8—H8A109.4
O3—C9—H9A109.4C7—C6—H6108.2
O3—C9—H9B109.4C7—C8—H8B109.4
N2—C2—C1127.1 (2)C7—C8—H8A109.4
N2—C2—N3110.1 (2)H7A—C7—H7B108.1
N2—C3—C4102.82 (18)C4—C3—H3A111.2
N2—C3—H3A111.2C4—C3—H3B111.2
N2—C3—H3B111.2H4B—C4—H4A109.1
N3—C2—C1122.80 (19)C3—N2—H2124.0
N3—C5—H5A108.7C3—C4—H4B111.1
N3—C5—H5B108.7C3—C4—H4A111.1
N3—C5—C6114.35 (18)H3A—C3—H3B109.1
N3—C4—H4B111.1C9—O3—C6110.8 (2)
N3—C4—H4A111.1C9—O4—C8110.0 (2)
N3—C4—C3103.34 (19)H9A—C9—H9B108.0
O1—N1—C1119.04 (19)C8—C7—H7A109.5
C5—N3—C4121.66 (19)C8—C7—H7B109.5
C5—C6—H6108.2H8B—C8—H8A108.0
C5—C6—C7113.16 (18)
O2—N1—C1—C20.9 (3)N3—C5—C6—O352.3 (3)
C2—N2—C3—C4−7.0 (2)N3—C5—C6—C7175.06 (19)
C2—N3—C5—C692.4 (3)N3—C4—C3—N27.6 (2)
C2—N3—C4—C3−6.3 (2)O1—N1—C1—C2−179.4 (2)
O3—C6—C7—C8−49.0 (3)C5—N3—C4—C3179.39 (19)
N2—C2—C1—N11.8 (3)C5—C6—C7—C8−170.9 (2)
N2—C2—N3—C5176.06 (19)C6—O3—C9—O4−64.4 (3)
N2—C2—N3—C42.1 (2)C6—C7—C8—O449.6 (3)
C1—C2—N2—C3−176.0 (2)C4—N3—C5—C6−94.3 (3)
C1—C2—N3—C5−4.5 (3)C9—O3—C6—C5−179.5 (2)
C1—C2—N3—C4−178.49 (19)C9—O3—C6—C756.0 (3)
N3—C2—N2—C33.4 (2)C9—O4—C8—C7−56.4 (3)
N3—C2—C1—N1−177.49 (18)C8—O4—C9—O364.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···O20.862.172.694 (3)119
N2—H2···O1i0.862.172.824 (3)133
C1—H1···O2ii0.932.423.249 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O20.862.172.694 (3)119
N2—H2⋯O1i0.862.172.824 (3)133
C1—H1⋯O2ii0.932.423.249 (3)148

Symmetry codes: (i) ; (ii) .

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